RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NBEAL1Q6ZS30 2694 aa6.23□□□□□ -1.41
SS18-205ENST00000542420 PMAIP1Q13794 54 aa6.22□□□□□ -1.41
SS18-205ENST00000542420 DEFB105AQ8NG35 78 aa6.22□□□□□ -1.41
SS18-205ENST00000542420 A0A1W2PNN7 141 aa6.22□□□□□ -1.41
SS18-205ENST00000542420 ERC2-IT1O76042 136 aa6.21□□□□□ -1.42
SS18-205ENST00000542420 SMIM29Q86T20 159 aa6.21□□□□□ -1.42
SS18-205ENST00000542420 A0A1W2PNM2 257 aa6.2□□□□□ -1.42
SS18-205ENST00000542420 BPY2O14599 106 aa6.2□□□□□ -1.42
SS18-205ENST00000542420 ST20-AS1Q8NBB2 130 aa6.2□□□□□ -1.42
SS18-205ENST00000542420 TMEM254Q8TBM7 123 aa6.2□□□□□ -1.42
SS18-205ENST00000542420 IGKV2-24A0A0C4DH68 120 aa6.19□□□□□ -1.42
SS18-205ENST00000542420 MGAM2Q2M2H8 2515 aa6.18□□□□□ -1.42
SS18-205ENST00000542420 IGKV4-1P06312 121 aa6.18□□□□□ -1.42
SS18-205ENST00000542420 LINC00476Q8WZB0 136 aa6.17□□□□□ -1.42
SS18-205ENST00000542420 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.16□□□□□ -1.42
SS18-205ENST00000542420 SPACA4Q8TDM5 124 aa6.15□□□□□ -1.42
SS18-205ENST00000542420 C3orf84H3BNL1 204 aa6.15□□□□□ -1.43
SS18-205ENST00000542420 Q6ZR54 194 aa6.15□□□□□ -1.43
SS18-205ENST00000542420 PHF5AQ7RTV0 110 aaKnown RBP6.15□□□□□ -1.43
SS18-205ENST00000542420 KRTAP13-1Q8IUC0 172 aa6.15□□□□□ -1.43
SS18-205ENST00000542420 STAB2Q8WWQ8 2551 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 A0A087WTM6 91 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 RPL37AP61513 92 aaKnown RBP6.14□□□□□ -1.43
SS18-205ENST00000542420 PRLHP81277 87 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 CD164Q04900 197 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 OCR1Q9BZK8 76 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 Q1T7F1 81 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 IGFL1Q6UW32 110 aa6.14□□□□□ -1.43
SS18-205ENST00000542420 hDV103S1A0JD37 113 aa6.13□□□□□ -1.43
SS18-205ENST00000542420 UBE2AP49459 152 aa6.13□□□□□ -1.43
SS18-205ENST00000542420 VPS13DQ5THJ4 4388 aa6.13□□□□□ -1.43
SS18-205ENST00000542420 SCXQ7RTU7 201 aa6.13□□□□□ -1.43
SS18-205ENST00000542420 HIGD2AQ9BW72 106 aa6.13□□□□□ -1.43
SS18-205ENST00000542420 CHTF8P0CG12 524 aa6.12□□□□□ -1.43
SS18-205ENST00000542420 ZNF706Q9Y5V0 76 aaPredicted RBP6.1□□□□□ -1.43
SS18-205ENST00000542420 DNAH7Q8WXX0 4024 aa6.1□□□□□ -1.43
SS18-205ENST00000542420 DSCR10P59022 87 aa6.09□□□□□ -1.43
SS18-205ENST00000542420 KRTAP21-3Q3LHN1 58 aa6.09□□□□□ -1.43
SS18-205ENST00000542420 KRTAP11-1Q8IUC1 163 aa6.09□□□□□ -1.43
SS18-205ENST00000542420 PLAC8Q9NZF1 115 aa6.09□□□□□ -1.43
SS18-205ENST00000542420 LINC00483Q53H64 154 aa6.09□□□□□ -1.43
SS18-205ENST00000542420 PLECQ15149 4684 aaKnown RBP6.08□□□□□ -1.44
SS18-205ENST00000542420 DNAH6Q9C0G6 4158 aa6.08□□□□□ -1.44
SS18-205ENST00000542420 LCE6AA0A183 80 aa6.08□□□□□ -1.44
SS18-205ENST00000542420 COL7A1Q02388 2944 aa6.08□□□□□ -1.44
SS18-205ENST00000542420 RTL8CO15255 209 aa6.08□□□□□ -1.44
SS18-205ENST00000542420 A8MU10 97 aa6.07□□□□□ -1.44
SS18-205ENST00000542420 DNAH10Q8IVF4 4471 aa6.07□□□□□ -1.44
SS18-205ENST00000542420 Q8N9L7 120 aa6.06□□□□□ -1.44
SS18-205ENST00000542420 C1orf64Q8NEQ6 169 aa6.06□□□□□ -1.44
SS18-205ENST00000542420 TRAV22A0A0B4J277 110 aa6.05□□□□□ -1.44
SS18-205ENST00000542420 C1orf134Q5TEV5 83 aa6.05□□□□□ -1.44
SS18-205ENST00000542420 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.05□□□□□ -1.44
SS18-205ENST00000542420 PANO1I0J062 215 aa6.05□□□□□ -1.44
SS18-205ENST00000542420 A0A087WSZ3 146 aa6.04□□□□□ -1.44
SS18-205ENST00000542420 IGLV5-52A0A0A0MRZ9 124 aa6.04□□□□□ -1.44
SS18-205ENST00000542420 HCG22E2RYF7 251 aa6.04□□□□□ -1.44
SS18-205ENST00000542420 PRKDCP78527 4128 aaKnown RBP6.04□□□□□ -1.44
SS18-205ENST00000542420 ZCCHC13Q8WW36 166 aaKnown RBP6.04□□□□□ -1.44
SS18-205ENST00000542420 K7EQZ3 153 aa6.03□□□□□ -1.44
SS18-205ENST00000542420 PSPHP1O15172 72 aa6.03□□□□□ -1.44
SS18-205ENST00000542420 DNAH17Q9UFH2 4485 aa6.03□□□□□ -1.44
SS18-205ENST00000542420 CSMD3Q7Z407 3707 aa6.02□□□□□ -1.45
SS18-205ENST00000542420 LINC00472Q9H8W2 130 aa6.02□□□□□ -1.45
SS18-205ENST00000542420 ZNF861PO60384 105 aa6.01□□□□□ -1.45
SS18-205ENST00000542420 RBM12B-AS1Q9P1G2 102 aa6.01□□□□□ -1.45
SS18-205ENST00000542420 A8MWP4 228 aa6□□□□□ -1.45
SS18-205ENST00000542420 STARD9Q9P2P6 4700 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 Q5VV11 94 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 KTN1-AS1Q86SY8 53 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 CYP4F30PQ9H0H9 118 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 PSORS1C2Q9UIG4 136 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 A8MUN3 132 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 KRTAP29-1A8MX34 341 aaPredicted RBP5.99□□□□□ -1.45
SS18-205ENST00000542420 H3BPC8 53 aa5.99□□□□□ -1.45
SS18-205ENST00000542420 LYSTQ99698 3801 aa5.98□□□□□ -1.45
SS18-205ENST00000542420 WWC2-AS2Q96NR7 200 aa5.98□□□□□ -1.45
SS18-205ENST00000542420 ALMS1Q8TCU4 4167 aa5.96□□□□□ -1.46
SS18-205ENST00000542420 NDUFB1O75438 58 aa5.96□□□□□ -1.46
SS18-205ENST00000542420 DNAH2Q9P225 4427 aa5.96□□□□□ -1.46
SS18-205ENST00000542420 FAM229AH3BQW9 127 aa5.96□□□□□ -1.46
SS18-205ENST00000542420 FAM30AQ9NZY2 134 aa5.96□□□□□ -1.46
SS18-205ENST00000542420 A0A0G2JQZ4 141 aa5.95□□□□□ -1.46
SS18-205ENST00000542420 IGLV7-43P04211 117 aa5.94□□□□□ -1.46
SS18-205ENST00000542420 LY6G6CO95867 125 aa5.94□□□□□ -1.46
SS18-205ENST00000542420 MOBPQ13875 183 aa5.94□□□□□ -1.46
SS18-205ENST00000542420 CASC2Q6XLA1 102 aa5.93□□□□□ -1.46
SS18-205ENST00000542420 MP68P56378 58 aa5.93□□□□□ -1.46
SS18-205ENST00000542420 ASB16-AS1Q495Z4 193 aa5.93□□□□□ -1.46
SS18-205ENST00000542420 Q96NJ1 140 aa5.93□□□□□ -1.46
SS18-205ENST00000542420 A6NN06 94 aa5.92□□□□□ -1.46
SS18-205ENST00000542420 Q6ZSA8 131 aa5.92□□□□□ -1.46
SS18-205ENST00000542420 SSBP3-AS1Q7Z2R9 100 aa5.92□□□□□ -1.46
SS18-205ENST00000542420 HECTD4Q9Y4D8 3996 aa5.91□□□□□ -1.46
SS18-205ENST00000542420 IGLV9-49A0A0B4J1Y8 123 aa5.91□□□□□ -1.46
SS18-205ENST00000542420 MMP24-AS1A0A0U1RRL7 71 aa5.91□□□□□ -1.46
SS18-205ENST00000542420 LCA10Q71F78 164 aa5.91□□□□□ -1.46
SS18-205ENST00000542420 TP53AIP1Q9HCN2 124 aa5.91□□□□□ -1.46
SS18-205ENST00000542420 DNAH8Q96JB1 4490 aa5.9□□□□□ -1.46
SS18-205ENST00000542420 PRR4Q16378 134 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms