RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 C1orf137Q5JT78 98 aa5.75□□□□□ -1.49
CIITA-203ENST00000537380 MTURNQ8N3F0 131 aa5.75□□□□□ -1.49
CIITA-203ENST00000537380 ZNF706Q9Y5V0 76 aaPredicted RBP5.75□□□□□ -1.49
CIITA-203ENST00000537380 ERC2-IT1O76042 136 aa5.74□□□□□ -1.49
CIITA-203ENST00000537380 PDE6GP18545 87 aa5.74□□□□□ -1.49
CIITA-203ENST00000537380 Q8N377 158 aa5.74□□□□□ -1.49
CIITA-203ENST00000537380 HIGD2AQ9BW72 106 aa5.74□□□□□ -1.49
CIITA-203ENST00000537380 J3QR89 54 aa5.72□□□□□ -1.49
CIITA-203ENST00000537380 NDUFV3P56181 108 aaKnown RBP5.72□□□□□ -1.49
CIITA-203ENST00000537380 LINC00483Q53H64 154 aa5.72□□□□□ -1.49
CIITA-203ENST00000537380 IGLV8-61A0A075B6I0 122 aa5.71□□□□□ -1.5
CIITA-203ENST00000537380 RBM3P98179 157 aaKnown RBP5.71□□□□□ -1.5
CIITA-203ENST00000537380 MYCBP2O75592 4640 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 LOC110117498A0A087WWA1 95 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 K7ERU9 68 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 ST20-AS1Q8NBB2 130 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 SPRR4Q96PI1 79 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 LAMTOR3Q9UHA4 124 aa5.7□□□□□ -1.5
CIITA-203ENST00000537380 TRBV7-4A0A0J9YYF1 115 aa5.69□□□□□ -1.5
CIITA-203ENST00000537380 A0A1B0GW54 56 aa5.69□□□□□ -1.5
CIITA-203ENST00000537380 KRTAP10-4P60372 401 aaPredicted RBP5.69□□□□□ -1.5
CIITA-203ENST00000537380 RPL37AP61513 92 aaKnown RBP5.69□□□□□ -1.5
CIITA-203ENST00000537380 SMIM29Q86T20 159 aa5.69□□□□□ -1.5
CIITA-203ENST00000537380 FAM240AA0A1B0GVK7 77 aa5.68□□□□□ -1.5
CIITA-203ENST00000537380 DEFB105AQ8NG35 78 aa5.68□□□□□ -1.5
CIITA-203ENST00000537380 PKHD1L1Q86WI1 4243 aa5.68□□□□□ -1.5
CIITA-203ENST00000537380 F8WEM9 126 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 ACYP1P07311 99 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 FAM229BQ4G0N7 80 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 Q6JHZ5 121 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 SPINK6Q6UWN8 80 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 DSCR8Q96T75 97 aa5.67□□□□□ -1.5
CIITA-203ENST00000537380 CCKP06307 115 aa5.66□□□□□ -1.5
CIITA-203ENST00000537380 GAGE2AQ6NT46 116 aa5.66□□□□□ -1.5
CIITA-203ENST00000537380 Q6ZQT0 140 aa5.66□□□□□ -1.5
CIITA-203ENST00000537380 FLG2Q5D862 2391 aaPredicted RBP5.66□□□□□ -1.5
CIITA-203ENST00000537380 C14orf132Q9NPU4 83 aa5.65□□□□□ -1.5
CIITA-203ENST00000537380 KRTAP29-1A8MX34 341 aaPredicted RBP5.63□□□□□ -1.51
CIITA-203ENST00000537380 Q6Q795 121 aa5.63□□□□□ -1.51
CIITA-203ENST00000537380 DMBT1Q9UGM3 2413 aaPredicted RBP5.62□□□□□ -1.51
CIITA-203ENST00000537380 OXTP01178 125 aa5.62□□□□□ -1.51
CIITA-203ENST00000537380 SSBP3-AS1Q7Z2R9 100 aa5.62□□□□□ -1.51
CIITA-203ENST00000537380 C3orf22Q8N5N4 141 aa5.62□□□□□ -1.51
CIITA-203ENST00000537380 KRTAP1-4P0C5Y4 121 aa5.6□□□□□ -1.51
CIITA-203ENST00000537380 CRYGAP11844 174 aa5.6□□□□□ -1.51
CIITA-203ENST00000537380 Q8NBF4 154 aa5.6□□□□□ -1.51
CIITA-203ENST00000537380 FAT3Q8TDW7 4589 aa5.6□□□□□ -1.51
CIITA-203ENST00000537380 LRP1Q07954 4544 aaKnown RBP5.59□□□□□ -1.51
CIITA-203ENST00000537380 IGFL1Q6UW32 110 aa5.59□□□□□ -1.51
CIITA-203ENST00000537380 HERC1Q15751 4861 aa5.59□□□□□ -1.52
CIITA-203ENST00000537380 CD164Q04900 197 aa5.58□□□□□ -1.52
CIITA-203ENST00000537380 A0A1W2PNM2 257 aa5.57□□□□□ -1.52
CIITA-203ENST00000537380 TRBV7-7A0A0K0K1E9 115 aa5.56□□□□□ -1.52
CIITA-203ENST00000537380 IGLV9-49A0A0B4J1Y8 123 aa5.55□□□□□ -1.52
CIITA-203ENST00000537380 A0A1B0GV72 72 aa5.55□□□□□ -1.52
CIITA-203ENST00000537380 C9orf153Q5TBE3 101 aa5.55□□□□□ -1.52
CIITA-203ENST00000537380 UBL5Q9BZL1 73 aa5.55□□□□□ -1.52
CIITA-203ENST00000537380 CDIP1Q9H305 208 aa5.55□□□□□ -1.52
CIITA-203ENST00000537380 A0A087X002 238 aa5.54□□□□□ -1.52
CIITA-203ENST00000537380 MOBPQ13875 183 aa5.54□□□□□ -1.52
CIITA-203ENST00000537380 LINC00846Q9NV44 126 aa5.54□□□□□ -1.52
CIITA-203ENST00000537380 ANAPC11Q9NYG5 84 aa5.54□□□□□ -1.52
CIITA-203ENST00000537380 KRTAP13-2Q52LG2 175 aa5.53□□□□□ -1.52
CIITA-203ENST00000537380 LINC00643Q86TS7 51 aa5.53□□□□□ -1.52
CIITA-203ENST00000537380 ATP5EP2Q5VTU8 51 aa5.52□□□□□ -1.53
CIITA-203ENST00000537380 Q5XG85 94 aa5.52□□□□□ -1.53
CIITA-203ENST00000537380 VPS25Q9BRG1 176 aa5.52□□□□□ -1.53
CIITA-203ENST00000537380 RPS29P62273 56 aaKnown RBP5.51□□□□□ -1.53
CIITA-203ENST00000537380 SPAG11AQ6PDA7 123 aa5.51□□□□□ -1.53
CIITA-203ENST00000537380 SS18L2Q9UHA2 77 aa5.51□□□□□ -1.53
CIITA-203ENST00000537380 NREPQ16612 68 aa5.5□□□□□ -1.53
CIITA-203ENST00000537380 ASB16-AS1Q495Z4 193 aa5.5□□□□□ -1.53
CIITA-203ENST00000537380 Q6ZVQ6 151 aa5.5□□□□□ -1.53
CIITA-203ENST00000537380 TYMSOSQ8TAI1 123 aa5.5□□□□□ -1.53
CIITA-203ENST00000537380 SPINK1P00995 79 aa5.49□□□□□ -1.53
CIITA-203ENST00000537380 CXCL6P80162 114 aa5.49□□□□□ -1.53
CIITA-203ENST00000537380 TNXBP22105 4242 aa5.48□□□□□ -1.53
CIITA-203ENST00000537380 A0A087WSZ3 146 aa5.48□□□□□ -1.53
CIITA-203ENST00000537380 MT1HL1P0DM35 61 aa5.48□□□□□ -1.53
CIITA-203ENST00000537380 IMUPQ9GZP8 106 aa5.48□□□□□ -1.53
CIITA-203ENST00000537380 A0A0G2JQZ4 141 aa5.47□□□□□ -1.53
CIITA-203ENST00000537380 J3KT08 172 aa5.46□□□□□ -1.54
CIITA-203ENST00000537380 KRTAP10-8P60410 259 aa5.46□□□□□ -1.54
CIITA-203ENST00000537380 C4orf48Q5BLP8 95 aa5.46□□□□□ -1.54
CIITA-203ENST00000537380 PRR26Q8N8Z3 221 aa5.46□□□□□ -1.54
CIITA-203ENST00000537380 SIGMAR1Q99720 223 aa5.46□□□□□ -1.54
CIITA-203ENST00000537380 LIMD2Q9BT23 127 aa5.45□□□□□ -1.54
CIITA-203ENST00000537380 LINC00472Q9H8W2 130 aa5.45□□□□□ -1.54
CIITA-203ENST00000537380 LINC00304Q8N9R0 145 aa5.44□□□□□ -1.54
CIITA-203ENST00000537380 BPY2O14599 106 aa5.43□□□□□ -1.54
CIITA-203ENST00000537380 MT-ATP8P03928 68 aa5.42□□□□□ -1.54
CIITA-203ENST00000537380 Q96NJ1 140 aa5.41□□□□□ -1.54
CIITA-203ENST00000537380 HMCN2Q8NDA2 5059 aa5.41□□□□□ -1.54
CIITA-203ENST00000537380 HRCT1Q6UXD1 115 aa5.4□□□□□ -1.54
CIITA-203ENST00000537380 A8MWP4 228 aa5.38□□□□□ -1.55
CIITA-203ENST00000537380 DSCR10P59022 87 aa5.38□□□□□ -1.55
CIITA-203ENST00000537380 IGKV3D-7A0A0C4DH55 119 aa5.37□□□□□ -1.55
CIITA-203ENST00000537380 NDUFB1O75438 58 aa5.37□□□□□ -1.55
CIITA-203ENST00000537380 SCGB1A1P11684 91 aa5.37□□□□□ -1.55
CIITA-203ENST00000537380 C1orf195Q5TG92 126 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms