RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 DSCR10P59022 87 aa9.22□□□□□ -0.93
NUP54-217ENST00000514987 SPACA4Q8TDM5 124 aa9.22□□□□□ -0.93
NUP54-217ENST00000514987 A0A087WTM6 91 aa9.21□□□□□ -0.93
NUP54-217ENST00000514987 TMEM254Q8TBM7 123 aa9.21□□□□□ -0.93
NUP54-217ENST00000514987 KRTAP13-1Q8IUC0 172 aa9.2□□□□□ -0.94
NUP54-217ENST00000514987 SNURFQ9Y675 71 aa9.2□□□□□ -0.94
NUP54-217ENST00000514987 ATP5EP56381 51 aaPredicted RBP9.19□□□□□ -0.94
NUP54-217ENST00000514987 A0A087WSZ3 146 aa9.18□□□□□ -0.94
NUP54-217ENST00000514987 K7EQZ3 153 aa9.16□□□□□ -0.94
NUP54-217ENST00000514987 Q6ZR54 194 aa9.16□□□□□ -0.94
NUP54-217ENST00000514987 A0A0U1RQV1 116 aa9.16□□□□□ -0.94
NUP54-217ENST00000514987 HCG22E2RYF7 251 aa9.16□□□□□ -0.94
NUP54-217ENST00000514987 PANO1I0J062 215 aa9.16□□□□□ -0.94
NUP54-217ENST00000514987 SERP1Q9Y6X1 66 aa9.15□□□□□ -0.95
NUP54-217ENST00000514987 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.15□□□□□ -0.95
NUP54-217ENST00000514987 A0A0G2JQZ4 141 aa9.14□□□□□ -0.95
NUP54-217ENST00000514987 LCE6AA0A183 80 aa9.14□□□□□ -0.95
NUP54-217ENST00000514987 RTL8CO15255 209 aa9.14□□□□□ -0.95
NUP54-217ENST00000514987 ZNF706Q9Y5V0 76 aaPredicted RBP9.14□□□□□ -0.95
NUP54-217ENST00000514987 RPL37AP61513 92 aaKnown RBP9.13□□□□□ -0.95
NUP54-217ENST00000514987 PLAC8Q9NZF1 115 aa9.11□□□□□ -0.95
NUP54-217ENST00000514987 FAM30AQ9NZY2 134 aa9.11□□□□□ -0.95
NUP54-217ENST00000514987 LINC00483Q53H64 154 aa9.1□□□□□ -0.95
NUP54-217ENST00000514987 C5orf47Q569G3 176 aa9.1□□□□□ -0.95
NUP54-217ENST00000514987 DNAH10Q8IVF4 4471 aa9.09□□□□□ -0.95
NUP54-217ENST00000514987 C1orf134Q5TEV5 83 aa9.09□□□□□ -0.95
NUP54-217ENST00000514987 IGLV5-52A0A0A0MRZ9 124 aa9.07□□□□□ -0.96
NUP54-217ENST00000514987 LINC00472Q9H8W2 130 aa9.07□□□□□ -0.96
NUP54-217ENST00000514987 A8MWP4 228 aa9.07□□□□□ -0.96
NUP54-217ENST00000514987 PRR15Q8IV56 129 aa9.06□□□□□ -0.96
NUP54-217ENST00000514987 LYSTQ99698 3801 aa9.06□□□□□ -0.96
NUP54-217ENST00000514987 OXTP01178 125 aa9.05□□□□□ -0.96
NUP54-217ENST00000514987 DEFB116Q30KQ4 102 aa9.05□□□□□ -0.96
NUP54-217ENST00000514987 CSMD3Q7Z407 3707 aa9.05□□□□□ -0.96
NUP54-217ENST00000514987 PSORS1C2Q9UIG4 136 aa9.04□□□□□ -0.96
NUP54-217ENST00000514987 TENM2Q9NT68 2774 aa9.03□□□□□ -0.96
NUP54-217ENST00000514987 KRTAP29-1A8MX34 341 aaPredicted RBP9.03□□□□□ -0.96
NUP54-217ENST00000514987 ZNF861PO60384 105 aa9.03□□□□□ -0.96
NUP54-217ENST00000514987 SVIPQ8NHG7 77 aa9.03□□□□□ -0.96
NUP54-217ENST00000514987 VPS13DQ5THJ4 4388 aa9.02□□□□□ -0.96
NUP54-217ENST00000514987 PLECQ15149 4684 aaKnown RBP9.01□□□□□ -0.97
NUP54-217ENST00000514987 NDUFB1O75438 58 aa9.01□□□□□ -0.97
NUP54-217ENST00000514987 CASC2Q6XLA1 102 aa9.01□□□□□ -0.97
NUP54-217ENST00000514987 WFDC13Q8IUB5 93 aa9.01□□□□□ -0.97
NUP54-217ENST00000514987 ZCCHC13Q8WW36 166 aaKnown RBP9.01□□□□□ -0.97
NUP54-217ENST00000514987 IGLV9-49A0A0B4J1Y8 123 aa9□□□□□ -0.97
NUP54-217ENST00000514987 DNAH7Q8WXX0 4024 aa9□□□□□ -0.97
NUP54-217ENST00000514987 MP68P56378 58 aa8.99□□□□□ -0.97
NUP54-217ENST00000514987 SMIM26A0A096LP01 95 aa8.99□□□□□ -0.97
NUP54-217ENST00000514987 H3BPC8 53 aa8.98□□□□□ -0.97
NUP54-217ENST00000514987 LY6G6CO95867 125 aa8.98□□□□□ -0.97
NUP54-217ENST00000514987 WWC2-AS2Q96NR7 200 aa8.98□□□□□ -0.97
NUP54-217ENST00000514987 IGLV7-43P04211 117 aa8.94□□□□□ -0.98
NUP54-217ENST00000514987 MOBPQ13875 183 aa8.93□□□□□ -0.98
NUP54-217ENST00000514987 Q5XG85 94 aa8.93□□□□□ -0.98
NUP54-217ENST00000514987 PRKDCP78527 4128 aaKnown RBP8.93□□□□□ -0.98
NUP54-217ENST00000514987 Q96NJ1 140 aa8.92□□□□□ -0.98
NUP54-217ENST00000514987 STARD9Q9P2P6 4700 aa8.92□□□□□ -0.98
NUP54-217ENST00000514987 MMP24-AS1A0A0U1RRL7 71 aa8.91□□□□□ -0.98
NUP54-217ENST00000514987 hDV103S1A0JD37 113 aa8.9□□□□□ -0.99
NUP54-217ENST00000514987 H0Y9P7 68 aa8.89□□□□□ -0.99
NUP54-217ENST00000514987 CDK2AP2O75956 126 aa8.89□□□□□ -0.99
NUP54-217ENST00000514987 MEGF8Q7Z7M0 2845 aa8.88□□□□□ -0.99
NUP54-217ENST00000514987 TP53AIP1Q9HCN2 124 aa8.88□□□□□ -0.99
NUP54-217ENST00000514987 TRAV22A0A0B4J277 110 aa8.87□□□□□ -0.99
NUP54-217ENST00000514987 CD164Q04900 197 aa8.87□□□□□ -0.99
NUP54-217ENST00000514987 ASB16-AS1Q495Z4 193 aa8.87□□□□□ -0.99
NUP54-217ENST00000514987 SRRM2Q9UQ35 2752 aaKnown RBP8.87□□□□□ -0.99
NUP54-217ENST00000514987 KRTAP21-3Q3LHN1 58 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 HRCT1Q6UXD1 115 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 LINC00208Q96KT6 92 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 CYP4F30PQ9H0H9 118 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 A0A1B0GVX0 72 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 C4orf26Q17RF5 130 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 SSBP3-AS1Q7Z2R9 100 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 C8orf17Q9NRJ1 99 aa8.86□□□□□ -0.99
NUP54-217ENST00000514987 DNAH17Q9UFH2 4485 aa8.83□□□□□ -1
NUP54-217ENST00000514987 CIRBP-AS1Q8TBR5 109 aa8.83□□□□□ -1
NUP54-217ENST00000514987 ANAPC11Q9NYG5 84 aa8.83□□□□□ -1
NUP54-217ENST00000514987 FP248Q71RG6 208 aaPredicted RBP8.82□□□□□ -1
NUP54-217ENST00000514987 SPANXA2-OT1Q8N9U9 137 aa8.82□□□□□ -1
NUP54-217ENST00000514987 KRTAP10-2P60368 255 aa8.82□□□□□ -1
NUP54-217ENST00000514987 Q6ZSA8 131 aa8.81□□□□□ -1
NUP54-217ENST00000514987 C1orf64Q8NEQ6 169 aa8.81□□□□□ -1
NUP54-217ENST00000514987 HECTD4Q9Y4D8 3996 aa8.81□□□□□ -1
NUP54-217ENST00000514987 DNAH6Q9C0G6 4158 aa8.8□□□□□ -1
NUP54-217ENST00000514987 IGHV6-1A0A0B4J1U7 121 aa8.79□□□□□ -1
NUP54-217ENST00000514987 MRPL34Q9BQ48 92 aaKnown RBP8.77□□□□□ -1.01
NUP54-217ENST00000514987 FAM229BQ4G0N7 80 aa8.76□□□□□ -1.01
NUP54-217ENST00000514987 DNAH2Q9P225 4427 aa8.75□□□□□ -1.01
NUP54-217ENST00000514987 FBN3Q75N90 2809 aa8.75□□□□□ -1.01
NUP54-217ENST00000514987 KMT2AQ03164 3969 aa8.74□□□□□ -1.01
NUP54-217ENST00000514987 KRTAP10-1P60331 282 aa8.73□□□□□ -1.01
NUP54-217ENST00000514987 C8orf87E5RJ46 101 aa8.72□□□□□ -1.01
NUP54-217ENST00000514987 TGP01266 2768 aa8.71□□□□□ -1.01
NUP54-217ENST00000514987 NDUFS5O43920 106 aa8.71□□□□□ -1.02
NUP54-217ENST00000514987 ALMS1Q8TCU4 4167 aa8.69□□□□□ -1.02
NUP54-217ENST00000514987 PRR4Q16378 134 aa8.69□□□□□ -1.02
NUP54-217ENST00000514987 SPINK6Q6UWN8 80 aa8.69□□□□□ -1.02
NUP54-217ENST00000514987 MPLKIPQ8TAP9 179 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms