RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 RPL28P46779 137 aaKnown RBP4.32□□□□□ -1.72
HDAC3-209ENST00000486618 FXYD2P54710 66 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 C9orf116Q5BN46 136 aaPredicted RBP4.32□□□□□ -1.72
HDAC3-209ENST00000486618 SPTSSBQ8NFR3 76 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 FAM167A-AS1Q96KT0 104 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 CDC42SE1Q9NRR8 79 aa4.32□□□□□ -1.72
HDAC3-209ENST00000486618 FAT3Q8TDW7 4589 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 MT1HL1P0DM35 61 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 FAM74A4Q5TZK3 123 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 CASC2Q6XLA1 102 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 Q8NBF4 154 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 TMEM167BQ9NRX6 74 aa4.31□□□□□ -1.72
HDAC3-209ENST00000486618 TRAV7A0A075B6U4 112 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 TRBV10-2A0A0K0K1G8 114 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 HCG22E2RYF7 251 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 H3BVH4 76 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 RPL36AP83881 106 aaKnown RBP4.3□□□□□ -1.72
HDAC3-209ENST00000486618 Q6JHZ5 121 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 ADM2Q7Z4H4 148 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 C20orf197Q8N268 126 aa4.3□□□□□ -1.72
HDAC3-209ENST00000486618 TRBV25-1A0A075B6N4 114 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 COX6CP09669 75 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 ATP5EP2Q5VTU8 51 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 C20orf203Q8NBC4 194 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 Q8NDZ9 215 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 RPP21Q9H633 154 aaKnown RBP4.29□□□□□ -1.72
HDAC3-209ENST00000486618 KLK12Q9UKR0 248 aa4.29□□□□□ -1.72
HDAC3-209ENST00000486618 A0A1B0GVX0 72 aa4.28□□□□□ -1.72
HDAC3-209ENST00000486618 ARL14EPLP0DKL9 152 aa4.28□□□□□ -1.72
HDAC3-209ENST00000486618 IFI27P40305 119 aaPredicted RBP4.28□□□□□ -1.72
HDAC3-209ENST00000486618 ROMO1P60602 79 aa4.28□□□□□ -1.72
HDAC3-209ENST00000486618 ATXN8Q156A1 80 aa4.28□□□□□ -1.72
HDAC3-209ENST00000486618 LIMD2Q9BT23 127 aa4.28□□□□□ -1.72
HDAC3-209ENST00000486618 F8WEM9 126 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 LEPROTL1O95214 131 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 ANGP03950 147 aaKnown RBP4.27□□□□□ -1.73
HDAC3-209ENST00000486618 SERF2P84101 59 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 C14orf132Q9NPU4 83 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 PKHD1L1Q86WI1 4243 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 LRP2P98164 4655 aa4.27□□□□□ -1.73
HDAC3-209ENST00000486618 TMSB15BA0A087X1C1 80 aa4.26□□□□□ -1.73
HDAC3-209ENST00000486618 TMEM223A0PJW6 202 aa4.26□□□□□ -1.73
HDAC3-209ENST00000486618 C9orf163Q8N9P6 203 aa4.26□□□□□ -1.73
HDAC3-209ENST00000486618 IGKV2D-30A0A075B6S6 120 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 TRAV22A0A0B4J277 110 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 TRBV10-1A0A0K0K1A3 114 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 ERC2-IT1O76042 136 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 ARMS2P0C7Q2 107 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 RNF213Q63HN8 5207 aa4.25□□□□□ -1.73
HDAC3-209ENST00000486618 SDHAF1A6NFY7 115 aa4.24□□□□□ -1.73
HDAC3-209ENST00000486618 ZNF815PA8K554 130 aa4.24□□□□□ -1.73
HDAC3-209ENST00000486618 RNASE3P12724 160 aaKnown RBP4.24□□□□□ -1.73
HDAC3-209ENST00000486618 CTXND1A0A1B0GTU2 59 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 GAS8-AS1O95177 125 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 TLX1NBP0CAT3 122 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 LINC01547P58512 204 aaPredicted RBP4.23□□□□□ -1.73
HDAC3-209ENST00000486618 FAM229BQ4G0N7 80 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 C14orf178Q8N769 122 aaPredicted RBP4.23□□□□□ -1.73
HDAC3-209ENST00000486618 C15orf56Q8N910 161 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 C1orf64Q8NEQ6 169 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
HDAC3-209ENST00000486618 TRAV23DV6A0A075B6W5 121 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 TRBV6-8A0A0A6YYG3 113 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 CHKB-CPT1BH3BT56 60 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 H7C2G1 150 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 Q5VV11 94 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 ENHOQ6UWT2 76 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 Q6ZQT0 140 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 NTM-AS1Q6ZSK4 140 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 Q86TA4 180 aa4.22□□□□□ -1.73
HDAC3-209ENST00000486618 TNXBP22105 4242 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 IGLV7-46A0A075B6I9 117 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 TEX49A0A1B0GTD5 131 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 PANO1I0J062 215 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 MGPP08493 103 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 SFTA2Q6UW10 78 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 LYZL1Q6UWQ5 148 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 C2orf82Q6UX34 121 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 UBE2D4Q9Y2X8 147 aa4.21□□□□□ -1.74
HDAC3-209ENST00000486618 IGHV3-64A0A075B6Q5 118 aa4.2□□□□□ -1.74
HDAC3-209ENST00000486618 A0A087WYN8 130 aa4.2□□□□□ -1.74
HDAC3-209ENST00000486618 UBE2D1P51668 147 aa4.2□□□□□ -1.74
HDAC3-209ENST00000486618 CLPSL2Q6UWE3 100 aa4.2□□□□□ -1.74
HDAC3-209ENST00000486618 MIR7-3HGQ8N6C7 128 aa4.2□□□□□ -1.74
HDAC3-209ENST00000486618 H3BPC8 53 aa4.19□□□□□ -1.74
HDAC3-209ENST00000486618 CNBPP62633 177 aaKnown RBP4.19□□□□□ -1.74
HDAC3-209ENST00000486618 PLAC8Q9NZF1 115 aa4.19□□□□□ -1.74
HDAC3-209ENST00000486618 KIF25-AS1Q9Y6Z4 181 aa4.19□□□□□ -1.74
HDAC3-209ENST00000486618 IGLV10-54A0A075B6I4 117 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 A0A087WSZ3 146 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 ZNF22P17026 224 aaPredicted RBP4.18□□□□□ -1.74
HDAC3-209ENST00000486618 KRTAP10-8P60410 259 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 MOBPQ13875 183 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 SPINK6Q6UWN8 80 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 TMEM254Q8TBM7 123 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 SPACA4Q8TDM5 124 aa4.18□□□□□ -1.74
HDAC3-209ENST00000486618 IGKV3OR2-268A0A0C4DH90 116 aa4.17□□□□□ -1.74
HDAC3-209ENST00000486618 TRBV6-1A0A0K0K1D8 114 aa4.17□□□□□ -1.74
HDAC3-209ENST00000486618 LINC01549A6NIU2 74 aa4.17□□□□□ -1.74
HDAC3-209ENST00000486618 BAALC-AS2P0C853 105 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms