RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 ZZEF1O43149 2961 aa-0.28□□□□□ -2.45
SMC4-215ENST00000484799 NREPQ16612 68 aa-0.28□□□□□ -2.45
SMC4-215ENST00000484799 DDX60LQ5H9U9 1706 aaKnown RBP-0.28□□□□□ -2.45
SMC4-215ENST00000484799 EPG5Q9HCE0 2579 aa-0.28□□□□□ -2.45
SMC4-215ENST00000484799 MXRA5Q9NR99 2828 aa-0.29□□□□□ -2.46
SMC4-215ENST00000484799 LINC00158P58513 81 aa-0.29□□□□□ -2.46
SMC4-215ENST00000484799 BVES-AS1Q5T3Y7 98 aa-0.29□□□□□ -2.46
SMC4-215ENST00000484799 SCRIBQ14160 1630 aa-0.29□□□□□ -2.46
SMC4-215ENST00000484799 THOC2Q8NI27 1593 aaKnown RBP-0.29□□□□□ -2.46
SMC4-215ENST00000484799 SPG11Q96JI7 2443 aa-0.29□□□□□ -2.46
SMC4-215ENST00000484799 NDUFA4O00483 81 aa-0.3□□□□□ -2.46
SMC4-215ENST00000484799 SMIM13P0DJ93 91 aa-0.3□□□□□ -2.46
SMC4-215ENST00000484799 SVEP1Q4LDE5 3571 aa-0.3□□□□□ -2.46
SMC4-215ENST00000484799 LYSTQ99698 3801 aa-0.3□□□□□ -2.46
SMC4-215ENST00000484799 PLCH1Q4KWH8 1693 aa-0.3□□□□□ -2.46
SMC4-215ENST00000484799 MUC12Q9UKN1 5478 aa-0.31□□□□□ -2.46
SMC4-215ENST00000484799 HIVEP1P15822 2718 aa-0.31□□□□□ -2.46
SMC4-215ENST00000484799 ANKRD50Q9ULJ7 1429 aa-0.31□□□□□ -2.46
SMC4-215ENST00000484799 RRBP1Q9P2E9 1410 aaKnown RBP-0.32□□□□□ -2.46
SMC4-215ENST00000484799 HTTP42858 3142 aa-0.33□□□□□ -2.46
SMC4-215ENST00000484799 ANKARQ7Z5J8 1434 aa-0.33□□□□□ -2.46
SMC4-215ENST00000484799 ANKRD11Q6UB99 2663 aaPredicted RBP-0.34□□□□□ -2.46
SMC4-215ENST00000484799 KRTAP6-2Q3LI66 62 aa-0.34□□□□□ -2.46
SMC4-215ENST00000484799 RICTORQ6R327 1708 aa-0.34□□□□□ -2.46
SMC4-215ENST00000484799 C18orf32Q8TCD1 76 aa-0.34□□□□□ -2.46
SMC4-215ENST00000484799 SONP18583 2426 aaKnown RBP-0.35□□□□□ -2.46
SMC4-215ENST00000484799 MRPL33O75394 65 aaKnown RBP-0.35□□□□□ -2.47
SMC4-215ENST00000484799 MAP3K1Q13233 1512 aa-0.35□□□□□ -2.47
SMC4-215ENST00000484799 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.35□□□□□ -2.47
SMC4-215ENST00000484799 ITSN1Q15811 1721 aa-0.35□□□□□ -2.47
SMC4-215ENST00000484799 LYNX1G3V0Z9 82 aa-0.36□□□□□ -2.47
SMC4-215ENST00000484799 H0YAA0 97 aa-0.36□□□□□ -2.47
SMC4-215ENST00000484799 CD163L1Q9NR16 1453 aa-0.36□□□□□ -2.47
SMC4-215ENST00000484799 ABCA8O94911 1581 aa-0.36□□□□□ -2.47
SMC4-215ENST00000484799 TACC2O95359 2948 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 HFM1A2PYH4 1435 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 TEP1Q99973 2627 aaKnown RBP-0.37□□□□□ -2.47
SMC4-215ENST00000484799 DEFB131BA0A096LNP1 70 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 SPRR2EP22531 72 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 RALGAPBQ86X10 1494 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 NBPF19A0A087WUL8 3843 aa-0.37□□□□□ -2.47
SMC4-215ENST00000484799 KRTAP19-7Q3SYF9 63 aa-0.38□□□□□ -2.47
SMC4-215ENST00000484799 AKAP9Q99996 3911 aa-0.38□□□□□ -2.47
SMC4-215ENST00000484799 CEP290O15078 2479 aa-0.39□□□□□ -2.47
SMC4-215ENST00000484799 DMXL1Q9Y485 3027 aa-0.39□□□□□ -2.47
SMC4-215ENST00000484799 GCN1Q92616 2671 aaKnown RBP-0.4□□□□□ -2.47
SMC4-215ENST00000484799 LAMA5O15230 3695 aa-0.4□□□□□ -2.47
SMC4-215ENST00000484799 FASNP49327 2511 aaKnown RBP-0.4□□□□□ -2.47
SMC4-215ENST00000484799 RNF17Q9BXT8 1623 aaKnown RBP-0.41□□□□□ -2.47
SMC4-215ENST00000484799 BPTFQ12830 3046 aa-0.41□□□□□ -2.47
SMC4-215ENST00000484799 C9orf92A6NGG3 77 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 DEFA5Q01523 94 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 UBL5Q9BZL1 73 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 KCNQ1DNQ9H478 68 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 ZC3H13Q5T200 1668 aaKnown RBP-0.41□□□□□ -2.48
SMC4-215ENST00000484799 NEBP20929 6669 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 TJP1Q07157 1748 aa-0.41□□□□□ -2.48
SMC4-215ENST00000484799 LMTK2Q8IWU2 1503 aa-0.42□□□□□ -2.48
SMC4-215ENST00000484799 PCLOQ9Y6V0 5065 aa-0.42□□□□□ -2.48
SMC4-215ENST00000484799 MTORP42345 2549 aa-0.42□□□□□ -2.48
SMC4-215ENST00000484799 LRRK2Q5S007 2527 aa-0.42□□□□□ -2.48
SMC4-215ENST00000484799 IAPPP10997 89 aa-0.43□□□□□ -2.48
SMC4-215ENST00000484799 DNAH9Q9NYC9 4486 aa-0.43□□□□□ -2.48
SMC4-215ENST00000484799 UTP20O75691 2785 aaKnown RBP-0.44□□□□□ -2.48
SMC4-215ENST00000484799 KALRNO60229 2985 aa-0.44□□□□□ -2.48
SMC4-215ENST00000484799 FAT3Q8TDW7 4589 aa-0.44□□□□□ -2.48
SMC4-215ENST00000484799 PKD1L2Q7Z442 2459 aa-0.44□□□□□ -2.48
SMC4-215ENST00000484799 VPS13BQ7Z7G8 4022 aa-0.44□□□□□ -2.48
SMC4-215ENST00000484799 NBEAQ8NFP9 2946 aa-0.44□□□□□ -2.48
SMC4-215ENST00000484799 DNAH6Q9C0G6 4158 aa-0.45□□□□□ -2.48
SMC4-215ENST00000484799 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.45□□□□□ -2.48
SMC4-215ENST00000484799 H3BNG1 76 aa-0.45□□□□□ -2.48
SMC4-215ENST00000484799 DEFB130BP0DP73 79 aa-0.45□□□□□ -2.48
SMC4-215ENST00000484799 DEFB130AP0DP74 79 aa-0.45□□□□□ -2.48
SMC4-215ENST00000484799 PRLHP81277 87 aa-0.45□□□□□ -2.48
SMC4-215ENST00000484799 INO80Q9ULG1 1556 aaPredicted RBP-0.45□□□□□ -2.48
SMC4-215ENST00000484799 KMT2CQ8NEZ4 4911 aaKnown RBP-0.46□□□□□ -2.48
SMC4-215ENST00000484799 KIAA0586Q9BVV6 1533 aa-0.46□□□□□ -2.48
SMC4-215ENST00000484799 DNAH3Q8TD57 4116 aa-0.46□□□□□ -2.48
SMC4-215ENST00000484799 NHSQ6T4R5 1651 aa-0.46□□□□□ -2.48
SMC4-215ENST00000484799 PARP4Q9UKK3 1724 aaKnown RBP-0.47□□□□□ -2.48
SMC4-215ENST00000484799 CUBNO60494 3623 aa-0.47□□□□□ -2.48
SMC4-215ENST00000484799 ITPR3Q14573 2671 aa-0.47□□□□□ -2.48
SMC4-215ENST00000484799 H3BVH4 76 aa-0.48□□□□□ -2.49
SMC4-215ENST00000484799 MT1AP04731 61 aa-0.48□□□□□ -2.49
SMC4-215ENST00000484799 MYO5CQ9NQX4 1742 aa-0.48□□□□□ -2.49
SMC4-215ENST00000484799 LRRIQ1Q96JM4 1722 aa-0.49□□□□□ -2.49
SMC4-215ENST00000484799 ENHOQ6UWT2 76 aa-0.49□□□□□ -2.49
SMC4-215ENST00000484799 NRAPQ86VF7 1730 aa-0.5□□□□□ -2.49
SMC4-215ENST00000484799 HERC1Q15751 4861 aa-0.5□□□□□ -2.49
SMC4-215ENST00000484799 FAM186AA6NE01 2351 aa-0.5□□□□□ -2.49
SMC4-215ENST00000484799 ETDCA0A1B0GVM5 59 aa-0.52□□□□□ -2.49
SMC4-215ENST00000484799 SPRR2FQ96RM1 72 aa-0.52□□□□□ -2.49
SMC4-215ENST00000484799 IQGAP3Q86VI3 1631 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 LAMA1P25391 3075 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 UGGT2Q9NYU1 1516 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 CRIP1P50238 77 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 ATXN8Q156A1 80 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 DEFB114Q30KQ6 69 aa-0.53□□□□□ -2.49
SMC4-215ENST00000484799 WDR87Q6ZQQ6 2873 aa-0.53□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms