RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 C9orf163Q8N9P6 203 aa9.09□□□□□ -0.95
CHD3-211ENST00000481999 TNP2Q05952 138 aa9.08□□□□□ -0.96
CHD3-211ENST00000481999 H7BZZ5 65 aa9.08□□□□□ -0.96
CHD3-211ENST00000481999 Q8N9L7 120 aa9.08□□□□□ -0.96
CHD3-211ENST00000481999 C1orf137Q5JT78 98 aa9.07□□□□□ -0.96
CHD3-211ENST00000481999 A0A087WTM6 91 aa9.07□□□□□ -0.96
CHD3-211ENST00000481999 FAM236DA0A1B0GTK5 79 aa9.07□□□□□ -0.96
CHD3-211ENST00000481999 FAM236CP0DP71 79 aa9.07□□□□□ -0.96
CHD3-211ENST00000481999 C14orf177Q52M58 125 aa9.07□□□□□ -0.96
CHD3-211ENST00000481999 Q6ZR54 194 aa9.06□□□□□ -0.96
CHD3-211ENST00000481999 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.06□□□□□ -0.96
CHD3-211ENST00000481999 A0A1W2PNM2 257 aa9.06□□□□□ -0.96
CHD3-211ENST00000481999 UBE2BP63146 152 aa9.06□□□□□ -0.96
CHD3-211ENST00000481999 REG3GQ6UW15 175 aa9.06□□□□□ -0.96
CHD3-211ENST00000481999 Q8NBF4 154 aa9.05□□□□□ -0.96
CHD3-211ENST00000481999 DNAH17Q9UFH2 4485 aa9.05□□□□□ -0.96
CHD3-211ENST00000481999 SNURFQ9Y675 71 aa9.05□□□□□ -0.96
CHD3-211ENST00000481999 DNAH8Q96JB1 4490 aa9.04□□□□□ -0.96
CHD3-211ENST00000481999 OXTP01178 125 aa9.04□□□□□ -0.96
CHD3-211ENST00000481999 NDUFC1O43677 76 aa9.03□□□□□ -0.96
CHD3-211ENST00000481999 SPRR4Q96PI1 79 aa9.02□□□□□ -0.97
CHD3-211ENST00000481999 A0A0G2JQZ4 141 aa9.01□□□□□ -0.97
CHD3-211ENST00000481999 HIGD2AQ9BW72 106 aa9.01□□□□□ -0.97
CHD3-211ENST00000481999 DNAH5Q8TE73 4624 aa9.01□□□□□ -0.97
CHD3-211ENST00000481999 TMEM254Q8TBM7 123 aa9□□□□□ -0.97
CHD3-211ENST00000481999 OCR1Q9BZK8 76 aa9□□□□□ -0.97
CHD3-211ENST00000481999 DNAH11Q96DT5 4516 aa8.99□□□□□ -0.97
CHD3-211ENST00000481999 F8WEM9 126 aa8.99□□□□□ -0.97
CHD3-211ENST00000481999 RTL8CO15255 209 aa8.99□□□□□ -0.97
CHD3-211ENST00000481999 KMT2CQ8NEZ4 4911 aaKnown RBP8.99□□□□□ -0.97
CHD3-211ENST00000481999 SMIM29Q86T20 159 aa8.98□□□□□ -0.97
CHD3-211ENST00000481999 LINC00476Q8WZB0 136 aa8.98□□□□□ -0.97
CHD3-211ENST00000481999 SERP1Q9Y6X1 66 aa8.98□□□□□ -0.97
CHD3-211ENST00000481999 FAT2Q9NYQ8 4349 aa8.98□□□□□ -0.97
CHD3-211ENST00000481999 C1orf134Q5TEV5 83 aa8.98□□□□□ -0.97
CHD3-211ENST00000481999 SACSQ9NZJ4 4579 aa8.97□□□□□ -0.97
CHD3-211ENST00000481999 ALMS1Q8TCU4 4167 aa8.97□□□□□ -0.97
CHD3-211ENST00000481999 SPACA4Q8TDM5 124 aa8.96□□□□□ -0.98
CHD3-211ENST00000481999 EPM2AB3EWF7 344 aa8.95□□□□□ -0.98
CHD3-211ENST00000481999 ATP5EP56381 51 aaPredicted RBP8.94□□□□□ -0.98
CHD3-211ENST00000481999 PKHD1P08F94 4074 aa8.94□□□□□ -0.98
CHD3-211ENST00000481999 PKD1P98161 4303 aa8.94□□□□□ -0.98
CHD3-211ENST00000481999 A0A0U1RQV1 116 aa8.93□□□□□ -0.98
CHD3-211ENST00000481999 DSCR10P59022 87 aa8.93□□□□□ -0.98
CHD3-211ENST00000481999 IGLV5-52A0A0A0MRZ9 124 aa8.92□□□□□ -0.98
CHD3-211ENST00000481999 KRTAP10-2P60368 255 aa8.92□□□□□ -0.98
CHD3-211ENST00000481999 IGLV8-61A0A075B6I0 122 aa8.91□□□□□ -0.98
CHD3-211ENST00000481999 IGFL1Q6UW32 110 aa8.91□□□□□ -0.98
CHD3-211ENST00000481999 Q5XG85 94 aa8.91□□□□□ -0.98
CHD3-211ENST00000481999 LINC00474Q9P2X8 69 aa8.9□□□□□ -0.98
CHD3-211ENST00000481999 LCE6AA0A183 80 aa8.89□□□□□ -0.99
CHD3-211ENST00000481999 K7EQZ3 153 aa8.89□□□□□ -0.99
CHD3-211ENST00000481999 UBE2AP49459 152 aa8.89□□□□□ -0.99
CHD3-211ENST00000481999 RYR2Q92736 4967 aa8.88□□□□□ -0.99
CHD3-211ENST00000481999 FAM30AQ9NZY2 134 aa8.88□□□□□ -0.99
CHD3-211ENST00000481999 PKIGQ9Y2B9 76 aa8.88□□□□□ -0.99
CHD3-211ENST00000481999 H0Y9J4 135 aa8.87□□□□□ -0.99
CHD3-211ENST00000481999 C4orf26Q17RF5 130 aa8.86□□□□□ -0.99
CHD3-211ENST00000481999 RYR3Q15413 4870 aa8.85□□□□□ -0.99
CHD3-211ENST00000481999 LRP1BQ9NZR2 4599 aa8.85□□□□□ -0.99
CHD3-211ENST00000481999 A0A087WSZ3 146 aa8.84□□□□□ -0.99
CHD3-211ENST00000481999 HCG22E2RYF7 251 aa8.84□□□□□ -0.99
CHD3-211ENST00000481999 SPRR1BP22528 89 aa8.84□□□□□ -0.99
CHD3-211ENST00000481999 SMIM26A0A096LP01 95 aa8.84□□□□□ -0.99
CHD3-211ENST00000481999 PSORS1C2Q9UIG4 136 aa8.84□□□□□ -0.99
CHD3-211ENST00000481999 KRTAP13-1Q8IUC0 172 aa8.83□□□□□ -1
CHD3-211ENST00000481999 HRCT1Q6UXD1 115 aa8.81□□□□□ -1
CHD3-211ENST00000481999 ANAPC11Q9NYG5 84 aa8.81□□□□□ -1
CHD3-211ENST00000481999 PLAC8Q9NZF1 115 aa8.8□□□□□ -1
CHD3-211ENST00000481999 DEFB116Q30KQ4 102 aa8.79□□□□□ -1
CHD3-211ENST00000481999 VPS13BQ7Z7G8 4022 aa8.78□□□□□ -1
CHD3-211ENST00000481999 CIRBP-AS1Q8TBR5 109 aa8.77□□□□□ -1.01
CHD3-211ENST00000481999 ZCCHC13Q8WW36 166 aaKnown RBP8.77□□□□□ -1.01
CHD3-211ENST00000481999 FP248Q71RG6 208 aaPredicted RBP8.77□□□□□ -1.01
CHD3-211ENST00000481999 KRTAP10-1P60331 282 aa8.76□□□□□ -1.01
CHD3-211ENST00000481999 IGLV9-49A0A0B4J1Y8 123 aa8.75□□□□□ -1.01
CHD3-211ENST00000481999 WFDC13Q8IUB5 93 aa8.74□□□□□ -1.01
CHD3-211ENST00000481999 RPL37AP61513 92 aaKnown RBP8.72□□□□□ -1.01
CHD3-211ENST00000481999 PRR15Q8IV56 129 aa8.72□□□□□ -1.01
CHD3-211ENST00000481999 LINC00472Q9H8W2 130 aa8.72□□□□□ -1.01
CHD3-211ENST00000481999 KRTAP29-1A8MX34 341 aaPredicted RBP8.71□□□□□ -1.02
CHD3-211ENST00000481999 A8MWP4 228 aa8.71□□□□□ -1.02
CHD3-211ENST00000481999 MP68P56378 58 aa8.7□□□□□ -1.02
CHD3-211ENST00000481999 CASC2Q6XLA1 102 aa8.69□□□□□ -1.02
CHD3-211ENST00000481999 PRO0628Q9UI54 55 aa8.69□□□□□ -1.02
CHD3-211ENST00000481999 ZNF861PO60384 105 aa8.68□□□□□ -1.02
CHD3-211ENST00000481999 NDUFB1O75438 58 aa8.68□□□□□ -1.02
CHD3-211ENST00000481999 SEC61GP60059 68 aa8.68□□□□□ -1.02
CHD3-211ENST00000481999 FAM229BQ4G0N7 80 aa8.68□□□□□ -1.02
CHD3-211ENST00000481999 hDV103S1A0JD37 113 aa8.65□□□□□ -1.02
CHD3-211ENST00000481999 IGLV7-43P04211 117 aa8.65□□□□□ -1.02
CHD3-211ENST00000481999 Q6ZSA8 131 aa8.64□□□□□ -1.03
CHD3-211ENST00000481999 DYNC1H1Q14204 4646 aaKnown RBP8.64□□□□□ -1.03
CHD3-211ENST00000481999 MOBPQ13875 183 aa8.63□□□□□ -1.03
CHD3-211ENST00000481999 CYP4F30PQ9H0H9 118 aa8.63□□□□□ -1.03
CHD3-211ENST00000481999 H3BPC8 53 aa8.62□□□□□ -1.03
CHD3-211ENST00000481999 LINC00483Q53H64 154 aa8.62□□□□□ -1.03
CHD3-211ENST00000481999 TRAV22A0A0B4J277 110 aa8.62□□□□□ -1.03
CHD3-211ENST00000481999 C1orf64Q8NEQ6 169 aa8.62□□□□□ -1.03
CHD3-211ENST00000481999 LINC00208Q96KT6 92 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms