RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ANKRD39Q53RE8 183 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 ATOH7Q8N100 152 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 ERG28Q9UKR5 140 aa4.11□□□□□ -1.75
USP54-211ENST00000474929 C9orf118A6NHY6 69 aa4.1□□□□□ -1.75
USP54-211ENST00000474929 K7ERU9 68 aa4.1□□□□□ -1.75
USP54-211ENST00000474929 KRTAP5-9P26371 169 aa4.1□□□□□ -1.75
USP54-211ENST00000474929 LINC00158P58513 81 aa4.1□□□□□ -1.75
USP54-211ENST00000474929 C2orf91Q6ZV80 131 aa4.1□□□□□ -1.75
USP54-211ENST00000474929 VAMP3Q15836 100 aa4.09□□□□□ -1.75
USP54-211ENST00000474929 C9orf153Q5TBE3 101 aa4.09□□□□□ -1.75
USP54-211ENST00000474929 GAGE2AQ6NT46 116 aa4.09□□□□□ -1.75
USP54-211ENST00000474929 SND1-IT1Q9HBX3 110 aa4.09□□□□□ -1.75
USP54-211ENST00000474929 SMIM13P0DJ93 91 aa4.08□□□□□ -1.76
USP54-211ENST00000474929 MEIG1Q5JSS6 88 aa4.08□□□□□ -1.76
USP54-211ENST00000474929 ATP11AUNQ6ZP68 121 aa4.08□□□□□ -1.76
USP54-211ENST00000474929 LEPROTO15243 131 aa4.07□□□□□ -1.76
USP54-211ENST00000474929 VPREB1P12018 145 aa4.07□□□□□ -1.76
USP54-211ENST00000474929 COX17Q14061 63 aa4.07□□□□□ -1.76
USP54-211ENST00000474929 KRTAP2-2Q9BYT5 123 aa4.07□□□□□ -1.76
USP54-211ENST00000474929 KRTAP2-1Q9BYU5 128 aa4.07□□□□□ -1.76
USP54-211ENST00000474929 MYMXA0A1B0GTQ4 84 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 A0A1B0GWB2 263 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 E9PLD3 99 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 K7EP34 96 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 PRYO14603 147 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 FABP2P12104 132 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 TSPEAR-AS2P59090 65 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 LYRM7Q5U5X0 104 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 SFTA2Q6UW10 78 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 Q8NDZ9 215 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 SMCR5Q8TEV8 140 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 C20orf166-AS1Q96NR2 134 aa4.06□□□□□ -1.76
USP54-211ENST00000474929 ETDCA0A1B0GVM5 59 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 A0A1W2PPM0 123 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 F8W1H4 67 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 J3QQQ9 107 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 J3QR89 54 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 PCP4P48539 62 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 HERVK_113P61574 105 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 HERV-K104P63124 156 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 OCIAD2Q56VL3 154 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 CEND1Q8N111 149 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 MIR7-3HGQ8N6C7 128 aa4.05□□□□□ -1.76
USP54-211ENST00000474929 EIF4EBP3O60516 100 aaPredicted RBP4.04□□□□□ -1.76
USP54-211ENST00000474929 NMUP48645 174 aa4.04□□□□□ -1.76
USP54-211ENST00000474929 SPANXB1Q9NS25 103 aaPredicted RBP4.04□□□□□ -1.76
USP54-211ENST00000474929 FAM236DA0A1B0GTK5 79 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 H3BUT2 72 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 NCR3O14931 201 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 FAM236CP0DP71 79 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 NPC2P61916 151 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 Q6ZVH6 145 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 PCP2Q8IVA1 136 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 SPCS1Q9Y6A9 102 aa4.02□□□□□ -1.77
USP54-211ENST00000474929 A0A0J9YXY3 114 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 SCGB1A1P11684 91 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 SPRR1AP35321 89 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 ADAMTSL4-AS1Q5T5F5 129 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 HIST1H4GQ99525 98 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 TTTY13Q9BZ97 58 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 AHNAK2Q8IVF2 5795 aa4.01□□□□□ -1.77
USP54-211ENST00000474929 Q75L30 129 aa4□□□□□ -1.77
USP54-211ENST00000474929 TRBV10-3A0A0K0K1G6 114 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 ZNF815PA8K554 130 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 FXYD2P54710 66 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 CD164Q04900 197 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 Q5XG85 94 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 SOSTDC1Q6X4U4 206 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 COPS9Q8WXC6 57 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 VPS25Q9BRG1 176 aa3.99□□□□□ -1.77
USP54-211ENST00000474929 LOC107984156A0A0G2JMH3 177 aa3.98□□□□□ -1.77
USP54-211ENST00000474929 A6NN06 94 aa3.98□□□□□ -1.77
USP54-211ENST00000474929 SCGB1D4Q6XE38 83 aa3.98□□□□□ -1.77
USP54-211ENST00000474929 ARL17AQ8IVW1 177 aa3.98□□□□□ -1.77
USP54-211ENST00000474929 NHP2Q9NX24 153 aaKnown RBP3.98□□□□□ -1.77
USP54-211ENST00000474929 A0A0B4J2C4 111 aa3.97□□□□□ -1.77
USP54-211ENST00000474929 H3BMG7 143 aa3.97□□□□□ -1.77
USP54-211ENST00000474929 TIMM17BO60830 172 aa3.97□□□□□ -1.77
USP54-211ENST00000474929 S100A7L2Q5SY68 101 aa3.97□□□□□ -1.77
USP54-211ENST00000474929 KCNQ1DNQ9H478 68 aa3.97□□□□□ -1.77
USP54-211ENST00000474929 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 IFITM1P13164 125 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 HRCT1Q6UXD1 115 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 MTURNQ8N3F0 131 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 OR13C6PQ8NH95 151 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 LINC00308Q8TCZ7 52 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 LITAFQ99732 161 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
USP54-211ENST00000474929 NDUFC2O95298 119 aa3.95□□□□□ -1.78
USP54-211ENST00000474929 GHRHP01286 108 aa3.95□□□□□ -1.78
USP54-211ENST00000474929 RAB37Q96AX2 223 aa3.95□□□□□ -1.78
USP54-211ENST00000474929 PRO1854Q9UHT4 67 aa3.95□□□□□ -1.78
USP54-211ENST00000474929 A8MWP4 228 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 B5MCH6 92 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 ERC2-IT1O76042 136 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 C1orf195Q5TG92 126 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 SPANXDQ9BXN6 97 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 SPANXCQ9NY87 97 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 PRO0461Q9UI25 63 aa3.94□□□□□ -1.78
USP54-211ENST00000474929 TRAV23DV6A0A075B6W5 121 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms