RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 A0A1B0GV50 99 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 NDUFC2O95298 119 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 MPC2O95563 127 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 HERV-K104P63124 156 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 RHEBQ15382 184 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 TRIQKQ629K1 86 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 SLC7A5P1Q8MH63 180 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 MBD3L1Q8WWY6 194 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 KRTAP4-12Q9BQ66 201 aa0.82□□□□□ -2.28
USP40-211ENST00000464956 C8orf87E5RJ46 101 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 F8W036 122 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 K7EMI3 77 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 KRTAP19-5Q3LI72 72 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 OCIAD2Q56VL3 154 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 ERASQ7Z444 233 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 ORMDL3Q8N138 153 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 OR13C6PQ8NH95 151 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 SCGB3A1Q96QR1 104 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 MAP1LC3AQ9H492 121 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 MANBALQ9NQG1 85 aa0.81□□□□□ -2.28
USP40-211ENST00000464956 TMEM223A0PJW6 202 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 K7EN84 100 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 PDE6DO43924 150 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 SCGB1D1O95968 90 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 IGLC3P0DOY3 106 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 IL7P13232 177 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 ZNF22P17026 224 aaPredicted RBP0.8□□□□□ -2.28
USP40-211ENST00000464956 BTCP35070 178 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 MRPL54Q6P161 138 aaKnown RBP0.8□□□□□ -2.28
USP40-211ENST00000464956 TOMM6Q96B49 74 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 PRELID3AQ96N28 172 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 Q9H521 79 aa0.8□□□□□ -2.28
USP40-211ENST00000464956 TRBV7-6A0A0J9YX20 115 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 A0A1B0GW15 77 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 LINC01549A6NIU2 74 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 TMEM250H0YL14 139 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 S100A8P05109 93 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 C4orf26Q17RF5 130 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 TMEM170BQ5T4T1 132 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 TEN1Q86WV5 123 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 Q8N8P6 123 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 OCC1Q8TAD7 63 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 C10orf95Q9H7T3 257 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 GNG13Q9P2W3 67 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 LAMTOR2Q9Y2Q5 125 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 R4GN34 69 aa0.79□□□□□ -2.28
USP40-211ENST00000464956 IGKV2D-30A0A075B6S6 120 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 MYMXA0A1B0GTQ4 84 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 IGKV2-30P06310 120 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 ADCYAP1P18509 176 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 S100A5P33763 92 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 H2BFSP57053 126 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 KRTAP6-2Q3LI66 62 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 C7orf65Q6ZTY9 151 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 FAM213BQ8TBF2 198 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 NAT8BQ9UHF3 227 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 V9GYH0 126 aa0.78□□□□□ -2.28
USP40-211ENST00000464956 A4D1N5 150 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 H3BUT2 72 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 LYRM1O43325 122 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 P0C880 135 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 LINC01554Q52M75 96 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 LINC00518Q8N0U6 118 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 RAB37Q96AX2 223 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 SPANXDQ9BXN6 97 aa0.77□□□□□ -2.29
USP40-211ENST00000464956 A0A1B0GVX0 72 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 UMAD1C9J7I0 102 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 C9JQL5 133 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 HBDP02042 147 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 IFITM2Q01629 132 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 C2orf91Q6ZV80 131 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 ADM2Q7Z4H4 148 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 SNHG12Q9BXW3 62 aa0.76□□□□□ -2.29
USP40-211ENST00000464956 KRTAP9-6A8MVA2 160 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 TEX46H3BTG2 121 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 M0QZ58 72 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 SSNA1O43805 119 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 DEFB116Q30KQ4 102 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 FAM74A3Q4VXF1 159 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 LCE3AQ5TA76 89 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 KRTAP5-11Q6L8G4 156 aa0.75□□□□□ -2.29
USP40-211ENST00000464956 FAM240BA0A1B0GVZ2 78 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 C11orf86A6NJI1 115 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 PLA2G10O15496 165 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 NPC2P61916 151 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 Q6ZQY7 126 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 C1orf64Q8NEQ6 169 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 LINC00472Q9H8W2 130 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 OSTCQ9NRP0 149 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 SPANXCQ9NY87 97 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 NAT8Q9UHE5 227 aa0.74□□□□□ -2.29
USP40-211ENST00000464956 hDV103S1A0JD37 113 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 CEBPGP53567 150 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 LCE1FQ5T754 118 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 LCE1BQ5T7P3 118 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 CEND1Q8N111 149 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 PPDPFLQ8WWR9 84 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 KRTAP3-1Q9BYR8 98 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 TRAPPC1Q9Y5R8 145 aa0.73□□□□□ -2.29
USP40-211ENST00000464956 V9GYV3 84 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms