RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 HIST1H2BOP23527 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BBP33778 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HINT1P49773 126 aaPredicted RBP4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BDP58876 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BCP62807 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST2H2BEQ16778 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.03□□□□□ -1.76
USP54-208ENST00000461520 SOSTDC1Q6X4U4 206 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BHQ93079 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BNQ99877 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 HIST1H2BMQ99879 126 aa4.03□□□□□ -1.76
USP54-208ENST00000461520 NPC2P61916 151 aa4.02□□□□□ -1.77
USP54-208ENST00000461520 LCE3AQ5TA76 89 aa4.02□□□□□ -1.77
USP54-208ENST00000461520 C9orf153Q5TBE3 101 aa4.02□□□□□ -1.77
USP54-208ENST00000461520 PET117Q6UWS5 81 aa4.02□□□□□ -1.77
USP54-208ENST00000461520 CRCT1Q9UGL9 99 aa4.02□□□□□ -1.77
USP54-208ENST00000461520 LOC105371267A0A1B0GV96 52 aa4.01□□□□□ -1.77
USP54-208ENST00000461520 SPANXCQ9NY87 97 aa4.01□□□□□ -1.77
USP54-208ENST00000461520 A8MU10 97 aa4□□□□□ -1.77
USP54-208ENST00000461520 SYS1-DBNDD2H3BUS1 97 aa4□□□□□ -1.77
USP54-208ENST00000461520 TIMM17BO60830 172 aa4□□□□□ -1.77
USP54-208ENST00000461520 SPRR1BP22528 89 aa4□□□□□ -1.77
USP54-208ENST00000461520 SLC25A34Q6PIV7 304 aa4□□□□□ -1.77
USP54-208ENST00000461520 ST20-AS1Q8NBB2 130 aa4□□□□□ -1.77
USP54-208ENST00000461520 LINC00308Q8TCZ7 52 aa4□□□□□ -1.77
USP54-208ENST00000461520 DHRS4-AS1Q9P1J3 65 aa4□□□□□ -1.77
USP54-208ENST00000461520 OR13C6PQ8NH95 151 aa3.99□□□□□ -1.77
USP54-208ENST00000461520 LIMD2Q9BT23 127 aa3.99□□□□□ -1.77
USP54-208ENST00000461520 SPANXDQ9BXN6 97 aa3.99□□□□□ -1.77
USP54-208ENST00000461520 KRTAP4-1Q9BYQ7 146 aa3.99□□□□□ -1.77
USP54-208ENST00000461520 LINC01545Q5VT33 79 aa3.98□□□□□ -1.77
USP54-208ENST00000461520 LINC00518Q8N0U6 118 aa3.98□□□□□ -1.77
USP54-208ENST00000461520 KRTAP4-3Q9BYR4 195 aa3.98□□□□□ -1.77
USP54-208ENST00000461520 TTTY13Q9BZ97 58 aa3.98□□□□□ -1.77
USP54-208ENST00000461520 LAMTOR3Q9UHA4 124 aa3.98□□□□□ -1.77
USP54-208ENST00000461520 ZNF815PA8K554 130 aa3.97□□□□□ -1.77
USP54-208ENST00000461520 C3orf79P0CE67 100 aa3.97□□□□□ -1.77
USP54-208ENST00000461520 ELOF1P60002 83 aaKnown RBP3.97□□□□□ -1.77
USP54-208ENST00000461520 KRTDAPP60985 99 aa3.97□□□□□ -1.77
USP54-208ENST00000461520 ATOH7Q8N100 152 aa3.97□□□□□ -1.77
USP54-208ENST00000461520 COX7BP24311 80 aa3.96□□□□□ -1.78
USP54-208ENST00000461520 C6orf99Q4VX62 202 aa3.96□□□□□ -1.78
USP54-208ENST00000461520 TRBV7-6A0A0J9YX20 115 aa3.95□□□□□ -1.78
USP54-208ENST00000461520 CD164Q04900 197 aa3.95□□□□□ -1.78
USP54-208ENST00000461520 TAL2Q16559 108 aa3.95□□□□□ -1.78
USP54-208ENST00000461520 COPS9Q8WXC6 57 aa3.95□□□□□ -1.78
USP54-208ENST00000461520 TEX49A0A1B0GTD5 131 aa3.94□□□□□ -1.78
USP54-208ENST00000461520 COA6Q5JTJ3 125 aaKnown RBP3.94□□□□□ -1.78
USP54-208ENST00000461520 HRCT1Q6UXD1 115 aa3.94□□□□□ -1.78
USP54-208ENST00000461520 SCGB1D4Q6XE38 83 aa3.94□□□□□ -1.78
USP54-208ENST00000461520 PRO1933Q9H354 126 aa3.94□□□□□ -1.78
USP54-208ENST00000461520 A0A1B0GWB2 263 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 IFITM1P13164 125 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 Q1RN00 199 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 Q5XG85 94 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 Q6ZVH6 145 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 DEFB105AQ8NG35 78 aa3.93□□□□□ -1.78
USP54-208ENST00000461520 IGLV5-48A0A075B6I7 105 aa3.92□□□□□ -1.78
USP54-208ENST00000461520 C20orf202A1L168 122 aa3.92□□□□□ -1.78
USP54-208ENST00000461520 H7C2G1 150 aa3.92□□□□□ -1.78
USP54-208ENST00000461520 AKR1D1P51857 326 aa3.92□□□□□ -1.78
USP54-208ENST00000461520 IGLV8-61A0A075B6I0 122 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 A4D1N5 150 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 A6NDN8 102 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 C9orf92A6NGG3 77 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 PCOTHQ58A44 107 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 HIST3H2BBQ8N257 126 aa3.91□□□□□ -1.78
USP54-208ENST00000461520 NHP2Q9NX24 153 aaKnown RBP3.91□□□□□ -1.78
USP54-208ENST00000461520 KRTAP19-2Q3LHN2 52 aa3.9□□□□□ -1.79
USP54-208ENST00000461520 PCP2Q8IVA1 136 aa3.9□□□□□ -1.79
USP54-208ENST00000461520 MUSTN1Q8IVN3 82 aa3.9□□□□□ -1.79
USP54-208ENST00000461520 HIST1H2BLQ99880 126 aa3.9□□□□□ -1.79
USP54-208ENST00000461520 TRAV13-2A0A0B4J235 113 aa3.89□□□□□ -1.79
USP54-208ENST00000461520 C1orf195Q5TG92 126 aa3.89□□□□□ -1.79
USP54-208ENST00000461520 FAM218AQ96MZ4 157 aa3.89□□□□□ -1.79
USP54-208ENST00000461520 HSBP1L1C9JCN9 74 aa3.88□□□□□ -1.79
USP54-208ENST00000461520 S100A2P29034 98 aa3.88□□□□□ -1.79
USP54-208ENST00000461520 MT1HP80294 61 aa3.88□□□□□ -1.79
USP54-208ENST00000461520 SMIM11BQ8TCY0 68 aa3.88□□□□□ -1.79
USP54-208ENST00000461520 TCL1BO95988 128 aa3.87□□□□□ -1.79
USP54-208ENST00000461520 A0A0G2JQZ4 141 aa3.86□□□□□ -1.79
USP54-208ENST00000461520 RPL37P61927 97 aaKnown RBP3.86□□□□□ -1.79
USP54-208ENST00000461520 VAMP3Q15836 100 aa3.86□□□□□ -1.79
USP54-208ENST00000461520 F8WEM9 126 aa3.85□□□□□ -1.79
USP54-208ENST00000461520 LINC00575Q6W349 94 aa3.85□□□□□ -1.79
USP54-208ENST00000461520 hADV29S1A0JD25 119 aa3.84□□□□□ -1.79
USP54-208ENST00000461520 Q6JHZ5 121 aa3.84□□□□□ -1.79
USP54-208ENST00000461520 Q6ZQY7 126 aa3.83□□□□□ -1.8
USP54-208ENST00000461520 CLEC2BQ92478 149 aa3.83□□□□□ -1.8
USP54-208ENST00000461520 TRBV7-7A0A0K0K1E9 115 aa3.82□□□□□ -1.8
USP54-208ENST00000461520 IGFL1Q6UW32 110 aa3.82□□□□□ -1.8
USP54-208ENST00000461520 C12orf57Q99622 126 aa3.82□□□□□ -1.8
USP54-208ENST00000461520 PCP4L1A6NKN8 68 aa3.81□□□□□ -1.8
USP54-208ENST00000461520 OCIAD2Q56VL3 154 aa3.81□□□□□ -1.8
USP54-208ENST00000461520 BVES-AS1Q5T3Y7 98 aa3.81□□□□□ -1.8
USP54-208ENST00000461520 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.81□□□□□ -1.8
USP54-208ENST00000461520 PPDPFLQ8WWR9 84 aa3.81□□□□□ -1.8
USP54-208ENST00000461520 M0R2T5 61 aa3.8□□□□□ -1.8
USP54-208ENST00000461520 COX6B2Q6YFQ2 88 aa3.8□□□□□ -1.8
USP54-208ENST00000461520 C14orf144Q96I85 54 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms