RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	TRAV10	A0A0B4J240	114 aa		5.59	□□□□□ -1.52
SYNE1-215	ENST00000460912	RYR3	Q15413	4870 aa		5.58	□□□□□ -1.52
SYNE1-215	ENST00000460912	KRTAP1-5	Q9BYS1	174 aa		5.58	□□□□□ -1.52
SYNE1-215	ENST00000460912	PKHD1	P08F94	4074 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912	SYCN	Q0VAF6	134 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912	FAM229B	Q4G0N7	80 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912	CD164	Q04900	197 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912		Q6ZRX8	168 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912	TENM2	Q9NT68	2774 aa		5.57	□□□□□ -1.52
SYNE1-215	ENST00000460912	FAM168B	A1KXE4	195 aa		5.56	□□□□□ -1.52
SYNE1-215	ENST00000460912	SMIM29	Q86T20	159 aa		5.56	□□□□□ -1.52
SYNE1-215	ENST00000460912	RBM12B-AS1	Q9P1G2	102 aa		5.56	□□□□□ -1.52
SYNE1-215	ENST00000460912	LCE6A	A0A183	80 aa		5.56	□□□□□ -1.52
SYNE1-215	ENST00000460912		A8MUN3	132 aa		5.56	□□□□□ -1.52
SYNE1-215	ENST00000460912	PRY	O14603	147 aa		5.55	□□□□□ -1.52
SYNE1-215	ENST00000460912	SPRR4	Q96PI1	79 aa		5.55	□□□□□ -1.52
SYNE1-215	ENST00000460912	FAM30A	Q9NZY2	134 aa		5.55	□□□□□ -1.52
SYNE1-215	ENST00000460912		A0A1B0GW54	56 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	TG	P01266	2768 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	IGKV4-1	P06312	121 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	CNBP	P62633	177 aa	Known RBP	5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	STAB2	Q8WWQ8	2551 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	DYNC1H1	Q14204	4646 aa	Known RBP	5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	PRR15L	Q9BU68	103 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912		A8MU10	97 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912		H7BZZ5	65 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	KLKP1	Q107X0	134 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	HIGD2A	Q9BW72	106 aa		5.54	□□□□□ -1.52
SYNE1-215	ENST00000460912	IGLV8-61	A0A075B6I0	122 aa		5.53	□□□□□ -1.52
SYNE1-215	ENST00000460912	DEFB105A	Q8NG35	78 aa		5.53	□□□□□ -1.52
SYNE1-215	ENST00000460912		A0A1W2PNM2	257 aa		5.53	□□□□□ -1.52
SYNE1-215	ENST00000460912	VPS13B	Q7Z7G8	4022 aa		5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912	DEFB116	Q30KQ4	102 aa		5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912		Q6ZRN7	208 aa	Predicted RBP	5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912	C3orf84	H3BNL1	204 aa		5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912	ERC2-IT1	O76042	136 aa		5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912	NREP	Q16612	68 aa		5.52	□□□□□ -1.53
SYNE1-215	ENST00000460912	KRTAP11-1	Q8IUC1	163 aa		5.51	□□□□□ -1.53
SYNE1-215	ENST00000460912	TMEM254	Q8TBM7	123 aa		5.51	□□□□□ -1.53
SYNE1-215	ENST00000460912	TRAV7	A0A075B6U4	112 aa		5.51	□□□□□ -1.53
SYNE1-215	ENST00000460912	IGKV2D-24	A0A075B6R9	120 aa		5.51	□□□□□ -1.53
SYNE1-215	ENST00000460912	OCR1	Q9BZK8	76 aa		5.51	□□□□□ -1.53
SYNE1-215	ENST00000460912	DHRS4-AS1	Q9P1J3	65 aa		5.5	□□□□□ -1.53
SYNE1-215	ENST00000460912		Q6ZR54	194 aa		5.5	□□□□□ -1.53
SYNE1-215	ENST00000460912	KRTAP13-1	Q8IUC0	172 aa		5.49	□□□□□ -1.53
SYNE1-215	ENST00000460912	FLG2	Q5D862	2391 aa	Predicted RBP	5.49	□□□□□ -1.53
SYNE1-215	ENST00000460912	SRRM2	Q9UQ35	2752 aa	Known RBP	5.49	□□□□□ -1.53
SYNE1-215	ENST00000460912	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.48	□□□□□ -1.53
SYNE1-215	ENST00000460912	BPY2	O14599	106 aa		5.48	□□□□□ -1.53
SYNE1-215	ENST00000460912	ST20-AS1	Q8NBB2	130 aa		5.48	□□□□□ -1.53
SYNE1-215	ENST00000460912	NUPR2	A6NF83	97 aa		5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912	SPRR1B	P22528	89 aa		5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912	PRAC1	Q96KF2	57 aa		5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912	APOB	P04114	4563 aa	Known RBP	5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912	C16orf90	A8MZG2	172 aa		5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912		H0Y9J4	135 aa		5.47	□□□□□ -1.53
SYNE1-215	ENST00000460912		A0A1W2PNN7	141 aa		5.46	□□□□□ -1.53
SYNE1-215	ENST00000460912	HCG22	E2RYF7	251 aa		5.46	□□□□□ -1.54
SYNE1-215	ENST00000460912	DSCR10	P59022	87 aa		5.46	□□□□□ -1.54
SYNE1-215	ENST00000460912		A0A096LNI7	61 aa		5.45	□□□□□ -1.54
SYNE1-215	ENST00000460912		Q8NBF4	154 aa		5.45	□□□□□ -1.54
SYNE1-215	ENST00000460912	UBE2B	P63146	152 aa		5.45	□□□□□ -1.54
SYNE1-215	ENST00000460912	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.45	□□□□□ -1.54
SYNE1-215	ENST00000460912	RPL37AP8	A6NKH3	93 aa		5.44	□□□□□ -1.54
SYNE1-215	ENST00000460912	ZCCHC13	Q8WW36	166 aa	Known RBP	5.44	□□□□□ -1.54
SYNE1-215	ENST00000460912	NKAPP1	Q8N9T2	125 aa		5.43	□□□□□ -1.54
SYNE1-215	ENST00000460912	REG3G	Q6UW15	175 aa		5.43	□□□□□ -1.54
SYNE1-215	ENST00000460912	WWC2-AS2	Q96NR7	200 aa		5.43	□□□□□ -1.54
SYNE1-215	ENST00000460912	TRAV22	A0A0B4J277	110 aa		5.42	□□□□□ -1.54
SYNE1-215	ENST00000460912	WFDC13	Q8IUB5	93 aa		5.42	□□□□□ -1.54
SYNE1-215	ENST00000460912	KTN1-AS1	Q86SY8	53 aa		5.41	□□□□□ -1.54
SYNE1-215	ENST00000460912	PANO1	I0J062	215 aa		5.4	□□□□□ -1.54
SYNE1-215	ENST00000460912	NDUFC1	O43677	76 aa		5.4	□□□□□ -1.54
SYNE1-215	ENST00000460912	IGFL1	Q6UW32	110 aa		5.4	□□□□□ -1.54
SYNE1-215	ENST00000460912	LRP1B	Q9NZR2	4599 aa		5.4	□□□□□ -1.54
SYNE1-215	ENST00000460912	C1orf137	Q5JT78	98 aa		5.4	□□□□□ -1.55
SYNE1-215	ENST00000460912	UBE2A	P49459	152 aa		5.39	□□□□□ -1.55
SYNE1-215	ENST00000460912	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.39	□□□□□ -1.55
SYNE1-215	ENST00000460912	CHTF8	P0CG12	524 aa		5.39	□□□□□ -1.55
SYNE1-215	ENST00000460912	LINC00476	Q8WZB0	136 aa		5.39	□□□□□ -1.55
SYNE1-215	ENST00000460912	C1orf64	Q8NEQ6	169 aa		5.39	□□□□□ -1.55
SYNE1-215	ENST00000460912	ASB16-AS1	Q495Z4	193 aa		5.38	□□□□□ -1.55
SYNE1-215	ENST00000460912	C9orf163	Q8N9P6	203 aa		5.38	□□□□□ -1.55
SYNE1-215	ENST00000460912	C8orf87	E5RJ46	101 aa		5.38	□□□□□ -1.55
SYNE1-215	ENST00000460912	NBDY	A0A0U1RRE5	68 aa		5.37	□□□□□ -1.55
SYNE1-215	ENST00000460912	LINC00208	Q96KT6	92 aa		5.37	□□□□□ -1.55
SYNE1-215	ENST00000460912	SPAG11A	Q6PDA7	123 aa		5.37	□□□□□ -1.55
SYNE1-215	ENST00000460912	FAT3	Q8TDW7	4589 aa		5.36	□□□□□ -1.55
SYNE1-215	ENST00000460912	ETDC	A0A1B0GVM5	59 aa		5.36	□□□□□ -1.55
SYNE1-215	ENST00000460912	LINC00483	Q53H64	154 aa		5.36	□□□□□ -1.55
SYNE1-215	ENST00000460912		Q96NJ1	140 aa		5.36	□□□□□ -1.55
SYNE1-215	ENST00000460912	SPACA4	Q8TDM5	124 aa		5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912	LINC00472	Q9H8W2	130 aa		5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912	HSPG2	P98160	4391 aa		5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912		K7EQZ3	153 aa		5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912	ATP5E	P56381	51 aa	Predicted RBP	5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912	PRR15	Q8IV56	129 aa		5.35	□□□□□ -1.55
SYNE1-215	ENST00000460912		A0A1B0GVY2	172 aa		5.34	□□□□□ -1.55
SYNE1-215	ENST00000460912	PCOTH	Q58A44	107 aa		5.34	□□□□□ -1.55
SYNE1-215	ENST00000460912		A0A0G2JQZ4	141 aa		5.34	□□□□□ -1.56

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