RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 PLECQ15149 4684 aaKnown RBP7.43□□□□□ -1.22
CD44-209ENST00000433892 CHTF8P0CG12 524 aa7.42□□□□□ -1.22
CD44-209ENST00000433892 DYNC2H1Q8NCM8 4307 aaKnown RBP7.42□□□□□ -1.22
CD44-209ENST00000433892 HRCT1Q6UXD1 115 aa7.41□□□□□ -1.22
CD44-209ENST00000433892 DEFB116Q30KQ4 102 aa7.41□□□□□ -1.22
CD44-209ENST00000433892 KRTAP11-1Q8IUC1 163 aa7.4□□□□□ -1.22
CD44-209ENST00000433892 PHF5AQ7RTV0 110 aaKnown RBP7.4□□□□□ -1.23
CD44-209ENST00000433892 APLNQ9ULZ1 77 aa7.39□□□□□ -1.23
CD44-209ENST00000433892 ATP5EP56381 51 aaPredicted RBP7.38□□□□□ -1.23
CD44-209ENST00000433892 A0A087WSZ3 146 aa7.38□□□□□ -1.23
CD44-209ENST00000433892 UBE2AP49459 152 aa7.37□□□□□ -1.23
CD44-209ENST00000433892 IGLV8-61A0A075B6I0 122 aa7.36□□□□□ -1.23
CD44-209ENST00000433892 FP248Q71RG6 208 aaPredicted RBP7.36□□□□□ -1.23
CD44-209ENST00000433892 HCG22E2RYF7 251 aa7.35□□□□□ -1.23
CD44-209ENST00000433892 C14orf177Q52M58 125 aa7.35□□□□□ -1.23
CD44-209ENST00000433892 SMIM26A0A096LP01 95 aa7.35□□□□□ -1.23
CD44-209ENST00000433892 LINC00474Q9P2X8 69 aa7.35□□□□□ -1.23
CD44-209ENST00000433892 LCE6AA0A183 80 aa7.34□□□□□ -1.23
CD44-209ENST00000433892 C9orf163Q8N9P6 203 aa7.33□□□□□ -1.24
CD44-209ENST00000433892 RPL37AP61513 92 aaKnown RBP7.32□□□□□ -1.24
CD44-209ENST00000433892 LRCOL1A6NCL2 159 aa7.32□□□□□ -1.24
CD44-209ENST00000433892 WFDC13Q8IUB5 93 aa7.32□□□□□ -1.24
CD44-209ENST00000433892 PANO1I0J062 215 aa7.31□□□□□ -1.24
CD44-209ENST00000433892 FAM229BQ4G0N7 80 aa7.31□□□□□ -1.24
CD44-209ENST00000433892 H0Y9J4 135 aa7.31□□□□□ -1.24
CD44-209ENST00000433892 NBDYA0A0U1RRE5 68 aa7.3□□□□□ -1.24
CD44-209ENST00000433892 SPRR1BP22528 89 aa7.29□□□□□ -1.24
CD44-209ENST00000433892 ZCCHC13Q8WW36 166 aaKnown RBP7.29□□□□□ -1.24
CD44-209ENST00000433892 STARD9Q9P2P6 4700 aa7.29□□□□□ -1.24
CD44-209ENST00000433892 MDFIQ99750 246 aa7.28□□□□□ -1.24
CD44-209ENST00000433892 B9D2Q9BPU9 175 aa7.27□□□□□ -1.24
CD44-209ENST00000433892 HECTD4Q9Y4D8 3996 aa7.27□□□□□ -1.25
CD44-209ENST00000433892 VPS13DQ5THJ4 4388 aa7.27□□□□□ -1.25
CD44-209ENST00000433892 Q6ZRN7 208 aaPredicted RBP7.26□□□□□ -1.25
CD44-209ENST00000433892 MPLKIPQ8TAP9 179 aa7.26□□□□□ -1.25
CD44-209ENST00000433892 LCE2DQ5TA82 110 aaPredicted RBP7.25□□□□□ -1.25
CD44-209ENST00000433892 LINC00336Q6ZUF6 198 aa7.25□□□□□ -1.25
CD44-209ENST00000433892 LINC00472Q9H8W2 130 aa7.25□□□□□ -1.25
CD44-209ENST00000433892 KRTAP29-1A8MX34 341 aaPredicted RBP7.24□□□□□ -1.25
CD44-209ENST00000433892 KRTAP13-1Q8IUC0 172 aa7.24□□□□□ -1.25
CD44-209ENST00000433892 PRKDCP78527 4128 aaKnown RBP7.24□□□□□ -1.25
CD44-209ENST00000433892 FRAS1Q86XX4 4008 aa7.24□□□□□ -1.25
CD44-209ENST00000433892 DNAH2Q9P225 4427 aa7.24□□□□□ -1.25
CD44-209ENST00000433892 PRR15Q8IV56 129 aa7.24□□□□□ -1.25
CD44-209ENST00000433892 PKIGQ9Y2B9 76 aa7.24□□□□□ -1.25
CD44-209ENST00000433892 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.24□□□□□ -1.25
CD44-209ENST00000433892 CASC2Q6XLA1 102 aa7.23□□□□□ -1.25
CD44-209ENST00000433892 KMT2AQ03164 3969 aa7.22□□□□□ -1.25
CD44-209ENST00000433892 NUPR2A6NF83 97 aa7.22□□□□□ -1.25
CD44-209ENST00000433892 A8MWP4 228 aa7.22□□□□□ -1.25
CD44-209ENST00000433892 PRR4Q16378 134 aa7.22□□□□□ -1.25
CD44-209ENST00000433892 C1orf64Q8NEQ6 169 aa7.22□□□□□ -1.25
CD44-209ENST00000433892 hDV103S1A0JD37 113 aa7.21□□□□□ -1.25
CD44-209ENST00000433892 MP68P56378 58 aa7.21□□□□□ -1.25
CD44-209ENST00000433892 IGLV9-49A0A0B4J1Y8 123 aa7.21□□□□□ -1.26
CD44-209ENST00000433892 SPACA4Q8TDM5 124 aa7.21□□□□□ -1.26
CD44-209ENST00000433892 LINC00208Q96KT6 92 aa7.21□□□□□ -1.26
CD44-209ENST00000433892 DNAH8Q96JB1 4490 aa7.19□□□□□ -1.26
CD44-209ENST00000433892 TRAV22A0A0B4J277 110 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 H0Y9P7 68 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 NDUFB1O75438 58 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 A0A087WTM6 91 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 TGP01266 2768 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 MEGF8Q7Z7M0 2845 aa7.17□□□□□ -1.26
CD44-209ENST00000433892 PRO0628Q9UI54 55 aa7.16□□□□□ -1.26
CD44-209ENST00000433892 CYP4F30PQ9H0H9 118 aa7.16□□□□□ -1.26
CD44-209ENST00000433892 FBN3Q75N90 2809 aa7.16□□□□□ -1.26
CD44-209ENST00000433892 DNAH17Q9UFH2 4485 aa7.15□□□□□ -1.27
CD44-209ENST00000433892 MMP24-AS1A0A0U1RRL7 71 aa7.15□□□□□ -1.27
CD44-209ENST00000433892 Q96NJ1 140 aa7.13□□□□□ -1.27
CD44-209ENST00000433892 PSORS1C2Q9UIG4 136 aa7.13□□□□□ -1.27
CD44-209ENST00000433892 RTL8CO15255 209 aa7.13□□□□□ -1.27
CD44-209ENST00000433892 BRK1Q8WUW1 75 aa7.13□□□□□ -1.27
CD44-209ENST00000433892 ANAPC11Q9NYG5 84 aa7.13□□□□□ -1.27
CD44-209ENST00000433892 LINC00483Q53H64 154 aa7.12□□□□□ -1.27
CD44-209ENST00000433892 MOBPQ13875 183 aa7.12□□□□□ -1.27
CD44-209ENST00000433892 IGLV5-52A0A0A0MRZ9 124 aa7.11□□□□□ -1.27
CD44-209ENST00000433892 H3BPC8 53 aa7.11□□□□□ -1.27
CD44-209ENST00000433892 WWC2-AS2Q96NR7 200 aa7.1□□□□□ -1.27
CD44-209ENST00000433892 ZNF706Q9Y5V0 76 aaPredicted RBP7.09□□□□□ -1.27
CD44-209ENST00000433892 Q1T7F1 81 aa7.08□□□□□ -1.28
CD44-209ENST00000433892 DNAH6Q9C0G6 4158 aa7.08□□□□□ -1.28
CD44-209ENST00000433892 SPANXA2-OT1Q8N9U9 137 aa7.07□□□□□ -1.28
CD44-209ENST00000433892 PLAC8Q9NZF1 115 aa7.07□□□□□ -1.28
CD44-209ENST00000433892 IGHV6-1A0A0B4J1U7 121 aa7.07□□□□□ -1.28
CD44-209ENST00000433892 ZNF861PO60384 105 aa7.07□□□□□ -1.28
CD44-209ENST00000433892 Q6ZR54 194 aa7.07□□□□□ -1.28
CD44-209ENST00000433892 C8orf17Q9NRJ1 99 aa7.06□□□□□ -1.28
CD44-209ENST00000433892 PSPHP1O15172 72 aa7.06□□□□□ -1.28
CD44-209ENST00000433892 ASB16-AS1Q495Z4 193 aa7.06□□□□□ -1.28
CD44-209ENST00000433892 DNHD1Q96M86 4753 aa7.05□□□□□ -1.28
CD44-209ENST00000433892 A0A1B0GVX0 72 aa7.04□□□□□ -1.28
CD44-209ENST00000433892 ALMS1Q8TCU4 4167 aa7.04□□□□□ -1.28
CD44-209ENST00000433892 DNAH11Q96DT5 4516 aa7.03□□□□□ -1.28
CD44-209ENST00000433892 NDUFS5O43920 106 aa7.03□□□□□ -1.28
CD44-209ENST00000433892 CDK2AP2O75956 126 aa7.02□□□□□ -1.29
CD44-209ENST00000433892 PCOTHQ58A44 107 aa7.02□□□□□ -1.29
CD44-209ENST00000433892 TP53AIP1Q9HCN2 124 aa7.02□□□□□ -1.29
CD44-209ENST00000433892 A0A087X002 238 aa7.02□□□□□ -1.29
CD44-209ENST00000433892 NOTCH2NLQ7Z3S9 236 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms