RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 NIPBLQ6KC79 2804 aaeCLIP0.9□□□□□ -2.26
PTPRC-208ENST00000427110 ANK2Q01484 3957 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 GCN1Q92616 2671 aaKnown RBP0.9□□□□□ -2.27
PTPRC-208ENST00000427110 HUWE1Q7Z6Z7 4374 aaKnown RBP0.9□□□□□ -2.27
PTPRC-208ENST00000427110 TRGV2A0A075B6R0 118 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 GVQW2A0A096LPI5 108 aaPredicted RBP0.9□□□□□ -2.27
PTPRC-208ENST00000427110 TRAV13-1A0A0B4J241 112 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 TRBV7-7A0A0K0K1E9 115 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 A0A1B0GV72 72 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 H3BNG1 76 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 NDUFC2O95298 119 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 MT-ATP8P03928 68 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 MIFP14174 115 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 CCL18P55774 89 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 CKS1BP61024 79 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 COX17Q14061 63 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 OBSCN-AS1Q96MR7 158 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 IMUPQ9GZP8 106 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 WFDC10AQ9H1F0 79 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 KLK5Q9Y337 293 aaPredicted RBP0.9□□□□□ -2.27
PTPRC-208ENST00000427110 C22orf24Q9Y442 160 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 OTOGQ6ZRI0 2925 aa0.9□□□□□ -2.27
PTPRC-208ENST00000427110 FASNP49327 2511 aaKnown RBP0.89□□□□□ -2.27
PTPRC-208ENST00000427110 TENM1Q9UKZ4 2725 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 VWFP04275 2813 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH9Q9NYC9 4486 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 TRRAPQ9Y4A5 3859 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 A0A096LPF7 62 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 TEX49A0A1B0GTD5 131 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 H7C2G1 150 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 SNCGO76070 127 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 CRPP02741 224 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 BAALC-AS2P0C853 105 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 SPART-AS1P0CW21 52 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00158P58513 81 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 NPC2P61916 151 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 LELP1Q5T871 98 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 LYPD5Q6UWN5 251 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 C5orf38Q86SI9 138 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00643Q86TS7 51 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 C15orf53Q8NAA6 179 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 SMIM11BQ8TCY0 68 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 CLEC2BQ92478 149 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 TMEM126AQ9H061 195 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 PRO2289Q9P1D8 64 aa0.89□□□□□ -2.27
PTPRC-208ENST00000427110 HIVEP1P15822 2718 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 ATRQ13535 2644 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 NBEAL2Q6ZNJ1 2754 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 TRBV7-6A0A0J9YX20 115 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 TRBV10-3A0A0K0K1G6 114 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 JMJD7-PLA2G4BH0Y9G9 81 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 TMEM256-PLSCR3K7ERE1 68 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 BCE1O60756 84 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 DNAL4O96015 105 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 ANGP03950 147 aaKnown RBP0.88□□□□□ -2.27
PTPRC-208ENST00000427110 DEFB130BP0DP73 79 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 DEFB130AP0DP74 79 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 HIST1H4AP62805 103 aaKnown RBP0.88□□□□□ -2.27
PTPRC-208ENST00000427110 TPRXLQ17RH7 258 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 DEFB135Q30KP9 77 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 Q6JHZ5 121 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 KRTAP26-1Q6PEX3 210 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 ENHOQ6UWT2 76 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00269Q8N2A0 174 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 Q8N814 137 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 SMR3AQ99954 134 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 C11orf68Q9H3H3 251 aaKnown RBP0.88□□□□□ -2.27
PTPRC-208ENST00000427110 ORMDL1Q9P0S3 153 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 TOMM7Q9P0U1 55 aa0.88□□□□□ -2.27
PTPRC-208ENST00000427110 VPS13DQ5THJ4 4388 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH6Q9C0G6 4158 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 PKD1L1Q8TDX9 2849 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 LOC110117498A0A087WWA1 95 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 IGKV3OR2-268A0A0C4DH90 116 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 A0A1B0GW54 56 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 hADV29S1A0JD25 119 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 UQCRQO14949 82 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 CCKP06307 115 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 COX7CP15954 63 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 PDE6GP18545 87 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 SPAG11BQ08648 103 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 LINC01556Q5JQF7 62 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 S100A7L2Q5SY68 101 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 ATP5EP2Q5VTU8 51 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 UNQ6190/PRO20217Q6UXQ8 127 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.87□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00575Q6W349 94 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 KTN1-AS1Q86SY8 53 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 COA5Q86WW8 74 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 OR13C6PQ8NH95 151 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 LINC00846Q9NV44 126 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 C6orf48Q9UBA6 75 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 F8P00451 2351 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 FCGBPQ9Y6R7 5405 aaPredicted RBP0.87□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH17Q9UFH2 4485 aa0.87□□□□□ -2.27
PTPRC-208ENST00000427110 MAST4O15021 2626 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 HECTD1Q9ULT8 2610 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 PLECQ15149 4684 aaKnown RBP0.86□□□□□ -2.27
PTPRC-208ENST00000427110 DNAH10Q8IVF4 4471 aa0.86□□□□□ -2.27
PTPRC-208ENST00000427110 TENM3Q9P273 2699 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 1481.9 ms