RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 F8WEM9 126 aa7.89□□□□□ -1.15
CIITA-202ENST00000381835 RYR2Q92736 4967 aa7.89□□□□□ -1.15
CIITA-202ENST00000381835 NKAPP1Q8N9T2 125 aa7.89□□□□□ -1.15
CIITA-202ENST00000381835 BRK1Q8WUW1 75 aa7.88□□□□□ -1.15
CIITA-202ENST00000381835 DNAH11Q96DT5 4516 aa7.87□□□□□ -1.15
CIITA-202ENST00000381835 BPY2O14599 106 aa7.87□□□□□ -1.15
CIITA-202ENST00000381835 KRTAP10-2P60368 255 aa7.87□□□□□ -1.15
CIITA-202ENST00000381835 NREPQ16612 68 aa7.87□□□□□ -1.15
CIITA-202ENST00000381835 KRTAP7-1Q8IUC3 87 aa7.87□□□□□ -1.15
CIITA-202ENST00000381835 PLA2G2DQ9UNK4 145 aa7.86□□□□□ -1.15
CIITA-202ENST00000381835 A0A0U1RQV1 116 aa7.86□□□□□ -1.15
CIITA-202ENST00000381835 NDUFC1O43677 76 aa7.86□□□□□ -1.15
CIITA-202ENST00000381835 Q8N9L7 120 aa7.86□□□□□ -1.15
CIITA-202ENST00000381835 A0A1W2PNN7 141 aa7.85□□□□□ -1.15
CIITA-202ENST00000381835 PANO1I0J062 215 aa7.85□□□□□ -1.15
CIITA-202ENST00000381835 DNAH5Q8TE73 4624 aa7.84□□□□□ -1.15
CIITA-202ENST00000381835 PKD1P98161 4303 aa7.84□□□□□ -1.15
CIITA-202ENST00000381835 DEFB105AQ8NG35 78 aa7.84□□□□□ -1.15
CIITA-202ENST00000381835 C7orf33Q8WU49 177 aa7.84□□□□□ -1.15
CIITA-202ENST00000381835 LINC00474Q9P2X8 69 aa7.84□□□□□ -1.15
CIITA-202ENST00000381835 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.84□□□□□ -1.15
CIITA-202ENST00000381835 IGLV5-37A0A075B6J1 123 aa7.83□□□□□ -1.16
CIITA-202ENST00000381835 IGKV4-1P06312 121 aa7.83□□□□□ -1.16
CIITA-202ENST00000381835 RPL37AP8A6NKH3 93 aa7.83□□□□□ -1.16
CIITA-202ENST00000381835 PMAIP1Q13794 54 aa7.83□□□□□ -1.16
CIITA-202ENST00000381835 MRPL55Q7Z7F7 128 aaKnown RBP7.83□□□□□ -1.16
CIITA-202ENST00000381835 TMEM254Q8TBM7 123 aa7.83□□□□□ -1.16
CIITA-202ENST00000381835 FP248Q71RG6 208 aaPredicted RBP7.82□□□□□ -1.16
CIITA-202ENST00000381835 SPACA4Q8TDM5 124 aa7.81□□□□□ -1.16
CIITA-202ENST00000381835 KCNQ1DNQ9H478 68 aa7.81□□□□□ -1.16
CIITA-202ENST00000381835 CD164Q04900 197 aa7.81□□□□□ -1.16
CIITA-202ENST00000381835 ERC2-IT1O76042 136 aa7.8□□□□□ -1.16
CIITA-202ENST00000381835 ATP5EP56381 51 aaPredicted RBP7.8□□□□□ -1.16
CIITA-202ENST00000381835 Q8N377 158 aa7.8□□□□□ -1.16
CIITA-202ENST00000381835 IGLV1-50A0A075B6I6 118 aa7.79□□□□□ -1.16
CIITA-202ENST00000381835 PHF5AQ7RTV0 110 aaKnown RBP7.79□□□□□ -1.16
CIITA-202ENST00000381835 PKHD1P08F94 4074 aa7.78□□□□□ -1.16
CIITA-202ENST00000381835 IGLV5-48A0A075B6I7 105 aa7.78□□□□□ -1.16
CIITA-202ENST00000381835 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
CIITA-202ENST00000381835 DHRS4-AS1Q9P1J3 65 aa7.77□□□□□ -1.17
CIITA-202ENST00000381835 RYR3Q15413 4870 aa7.76□□□□□ -1.17
CIITA-202ENST00000381835 KRTAP10-1P60331 282 aa7.76□□□□□ -1.17
CIITA-202ENST00000381835 UBE2BP63146 152 aa7.76□□□□□ -1.17
CIITA-202ENST00000381835 FAM30AQ9NZY2 134 aa7.76□□□□□ -1.17
CIITA-202ENST00000381835 PRYO14603 147 aa7.75□□□□□ -1.17
CIITA-202ENST00000381835 PRR15Q8IV56 129 aa7.75□□□□□ -1.17
CIITA-202ENST00000381835 Q6ZRX8 168 aa7.74□□□□□ -1.17
CIITA-202ENST00000381835 ETDCA0A1B0GVM5 59 aa7.74□□□□□ -1.17
CIITA-202ENST00000381835 DNAH8Q96JB1 4490 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 KRTAP11-1Q8IUC1 163 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 Q9BRP9 147 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 A0A1B0GW54 56 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 A0A1W2PNM2 257 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 C1orf137Q5JT78 98 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 REG3GQ6UW15 175 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 HIGD2AQ9BW72 106 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 PLAC8Q9NZF1 115 aa7.73□□□□□ -1.17
CIITA-202ENST00000381835 A0A1B0GVY2 172 aa7.72□□□□□ -1.17
CIITA-202ENST00000381835 SMIM29Q86T20 159 aa7.72□□□□□ -1.17
CIITA-202ENST00000381835 ST20-AS1Q8NBB2 130 aa7.72□□□□□ -1.17
CIITA-202ENST00000381835 KRTAP4-16G5E9R7 235 aaPredicted RBP7.71□□□□□ -1.18
CIITA-202ENST00000381835 SPRR1AP35321 89 aa7.7□□□□□ -1.18
CIITA-202ENST00000381835 Q6ZSA8 131 aa7.7□□□□□ -1.18
CIITA-202ENST00000381835 CIRBP-AS1Q8TBR5 109 aa7.7□□□□□ -1.18
CIITA-202ENST00000381835 Q8NBF4 154 aa7.69□□□□□ -1.18
CIITA-202ENST00000381835 LRP1BQ9NZR2 4599 aa7.68□□□□□ -1.18
CIITA-202ENST00000381835 FAM229BQ4G0N7 80 aa7.68□□□□□ -1.18
CIITA-202ENST00000381835 PRLHP81277 87 aa7.67□□□□□ -1.18
CIITA-202ENST00000381835 SPRR4Q96PI1 79 aa7.67□□□□□ -1.18
CIITA-202ENST00000381835 MPLKIPQ8TAP9 179 aa7.66□□□□□ -1.18
CIITA-202ENST00000381835 DYNC1H1Q14204 4646 aaKnown RBP7.65□□□□□ -1.18
CIITA-202ENST00000381835 DSCR10P59022 87 aa7.65□□□□□ -1.18
CIITA-202ENST00000381835 C4orf48Q5BLP8 95 aa7.65□□□□□ -1.18
CIITA-202ENST00000381835 PSORS1C2Q9UIG4 136 aa7.64□□□□□ -1.19
CIITA-202ENST00000381835 K7EQZ3 153 aa7.64□□□□□ -1.19
CIITA-202ENST00000381835 UBE2AP49459 152 aa7.63□□□□□ -1.19
CIITA-202ENST00000381835 SRRM2Q9UQ35 2752 aaKnown RBP7.63□□□□□ -1.19
CIITA-202ENST00000381835 HCG22E2RYF7 251 aa7.59□□□□□ -1.19
CIITA-202ENST00000381835 A0A0G2JQZ4 141 aa7.58□□□□□ -1.2
CIITA-202ENST00000381835 H0Y9J4 135 aa7.58□□□□□ -1.2
CIITA-202ENST00000381835 KRTAP13-1Q8IUC0 172 aa7.57□□□□□ -1.2
CIITA-202ENST00000381835 ZCCHC13Q8WW36 166 aaKnown RBP7.57□□□□□ -1.2
CIITA-202ENST00000381835 VPS13BQ7Z7G8 4022 aa7.57□□□□□ -1.2
CIITA-202ENST00000381835 hDV103S1A0JD37 113 aa7.57□□□□□ -1.2
CIITA-202ENST00000381835 DEFB116Q30KQ4 102 aa7.57□□□□□ -1.2
CIITA-202ENST00000381835 IGFL1Q6UW32 110 aa7.57□□□□□ -1.2
CIITA-202ENST00000381835 APOBP04114 4563 aaKnown RBP7.56□□□□□ -1.2
CIITA-202ENST00000381835 C1orf64Q8NEQ6 169 aa7.55□□□□□ -1.2
CIITA-202ENST00000381835 SMR3BP02814 79 aaPredicted RBP7.54□□□□□ -1.2
CIITA-202ENST00000381835 IGLV7-43P04211 117 aa7.54□□□□□ -1.2
CIITA-202ENST00000381835 ZNF861PO60384 105 aa7.53□□□□□ -1.2
CIITA-202ENST00000381835 WFDC13Q8IUB5 93 aa7.53□□□□□ -1.2
CIITA-202ENST00000381835 A0A087WSZ3 146 aa7.53□□□□□ -1.2
CIITA-202ENST00000381835 PRR4Q16378 134 aa7.51□□□□□ -1.21
CIITA-202ENST00000381835 IGLV8-61A0A075B6I0 122 aa7.5□□□□□ -1.21
CIITA-202ENST00000381835 Q1T7F1 81 aa7.5□□□□□ -1.21
CIITA-202ENST00000381835 KTN1-AS1Q86SY8 53 aa7.5□□□□□ -1.21
CIITA-202ENST00000381835 NDUFB1O75438 58 aa7.5□□□□□ -1.21
CIITA-202ENST00000381835 MP68P56378 58 aa7.5□□□□□ -1.21
CIITA-202ENST00000381835 RPL37AP61513 92 aaKnown RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms