RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SNURFQ9Y675 71 aa13.68□□□□□ -0.22
SHMT1-202ENST00000352886 NBDYA0A0U1RRE5 68 aa13.66□□□□□ -0.22
SHMT1-202ENST00000352886 LRCOL1A6NCL2 159 aa13.66□□□□□ -0.22
SHMT1-202ENST00000352886 KRTAP11-1Q8IUC1 163 aa13.66□□□□□ -0.22
SHMT1-202ENST00000352886 A0A0G2JQZ4 141 aa13.65□□□□□ -0.22
SHMT1-202ENST00000352886 C9orf163Q8N9P6 203 aa13.65□□□□□ -0.22
SHMT1-202ENST00000352886 NUPR2A6NF83 97 aa13.64□□□□□ -0.23
SHMT1-202ENST00000352886 IGFL1Q6UW32 110 aa13.63□□□□□ -0.23
SHMT1-202ENST00000352886 FP248Q71RG6 208 aaPredicted RBP13.62□□□□□ -0.23
SHMT1-202ENST00000352886 SMIM26A0A096LP01 95 aa13.6□□□□□ -0.23
SHMT1-202ENST00000352886 OCR1Q9BZK8 76 aa13.59□□□□□ -0.23
SHMT1-202ENST00000352886 Q6ZRN7 208 aaPredicted RBP13.59□□□□□ -0.23
SHMT1-202ENST00000352886 DSCR10P59022 87 aa13.58□□□□□ -0.24
SHMT1-202ENST00000352886 UBE2AP49459 152 aa13.56□□□□□ -0.24
SHMT1-202ENST00000352886 IGLV8-61A0A075B6I0 122 aa13.56□□□□□ -0.24
SHMT1-202ENST00000352886 TMEM254Q8TBM7 123 aa13.55□□□□□ -0.24
SHMT1-202ENST00000352886 H0Y9J4 135 aa13.55□□□□□ -0.24
SHMT1-202ENST00000352886 PKIGQ9Y2B9 76 aa13.55□□□□□ -0.24
SHMT1-202ENST00000352886 PANO1I0J062 215 aa13.54□□□□□ -0.24
SHMT1-202ENST00000352886 K7EQZ3 153 aa13.54□□□□□ -0.24
SHMT1-202ENST00000352886 LINC00474Q9P2X8 69 aa13.53□□□□□ -0.24
SHMT1-202ENST00000352886 SRRM2Q9UQ35 2752 aaKnown RBP13.52□□□□□ -0.24
SHMT1-202ENST00000352886 STARD9Q9P2P6 4700 aa13.52□□□□□ -0.25
SHMT1-202ENST00000352886 A0A087WSZ3 146 aa13.5□□□□□ -0.25
SHMT1-202ENST00000352886 NDUFC1O43677 76 aa13.5□□□□□ -0.25
SHMT1-202ENST00000352886 SPRR1BP22528 89 aa13.49□□□□□ -0.25
SHMT1-202ENST00000352886 FAM30AQ9NZY2 134 aa13.48□□□□□ -0.25
SHMT1-202ENST00000352886 VPS13DQ5THJ4 4388 aa13.48□□□□□ -0.25
SHMT1-202ENST00000352886 DEFB116Q30KQ4 102 aa13.48□□□□□ -0.25
SHMT1-202ENST00000352886 PRKDCP78527 4128 aaKnown RBP13.46□□□□□ -0.25
SHMT1-202ENST00000352886 A0A0U1RQV1 116 aa13.44□□□□□ -0.26
SHMT1-202ENST00000352886 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-202ENST00000352886 ATP5EP56381 51 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-202ENST00000352886 SPACA4Q8TDM5 124 aa13.43□□□□□ -0.26
SHMT1-202ENST00000352886 KRTAP13-1Q8IUC0 172 aa13.41□□□□□ -0.26
SHMT1-202ENST00000352886 HCG22E2RYF7 251 aa13.41□□□□□ -0.26
SHMT1-202ENST00000352886 A0A087WTM6 91 aa13.4□□□□□ -0.26
SHMT1-202ENST00000352886 BRK1Q8WUW1 75 aa13.4□□□□□ -0.26
SHMT1-202ENST00000352886 FAM229BQ4G0N7 80 aa13.38□□□□□ -0.27
SHMT1-202ENST00000352886 RPL37AP61513 92 aaKnown RBP13.35□□□□□ -0.27
SHMT1-202ENST00000352886 LCE6AA0A183 80 aa13.34□□□□□ -0.27
SHMT1-202ENST00000352886 MPLKIPQ8TAP9 179 aa13.32□□□□□ -0.28
SHMT1-202ENST00000352886 RTL8CO15255 209 aa13.32□□□□□ -0.28
SHMT1-202ENST00000352886 WFDC13Q8IUB5 93 aa13.32□□□□□ -0.28
SHMT1-202ENST00000352886 KMT2AQ03164 3969 aa13.31□□□□□ -0.28
SHMT1-202ENST00000352886 DNAH2Q9P225 4427 aa13.29□□□□□ -0.28
SHMT1-202ENST00000352886 Q6ZR54 194 aa13.29□□□□□ -0.28
SHMT1-202ENST00000352886 C1orf195Q5TG92 126 aa13.29□□□□□ -0.28
SHMT1-202ENST00000352886 LINC00472Q9H8W2 130 aa13.28□□□□□ -0.28
SHMT1-202ENST00000352886 HECTD4Q9Y4D8 3996 aa13.28□□□□□ -0.28
SHMT1-202ENST00000352886 MEGF8Q7Z7M0 2845 aa13.26□□□□□ -0.29
SHMT1-202ENST00000352886 IGLV9-49A0A0B4J1Y8 123 aa13.26□□□□□ -0.29
SHMT1-202ENST00000352886 DNAH17Q9UFH2 4485 aa13.24□□□□□ -0.29
SHMT1-202ENST00000352886 PRR15Q8IV56 129 aa13.24□□□□□ -0.29
SHMT1-202ENST00000352886 A8MWP4 228 aa13.23□□□□□ -0.29
SHMT1-202ENST00000352886 PSORS1C2Q9UIG4 136 aa13.23□□□□□ -0.29
SHMT1-202ENST00000352886 ZCCHC13Q8WW36 166 aaKnown RBP13.22□□□□□ -0.29
SHMT1-202ENST00000352886 KRTAP29-1A8MX34 341 aaPredicted RBP13.22□□□□□ -0.29
SHMT1-202ENST00000352886 IGLV5-52A0A0A0MRZ9 124 aa13.21□□□□□ -0.3
SHMT1-202ENST00000352886 V9GYY9 64 aa13.21□□□□□ -0.3
SHMT1-202ENST00000352886 LINC00483Q53H64 154 aa13.2□□□□□ -0.3
SHMT1-202ENST00000352886 PLAC8Q9NZF1 115 aa13.2□□□□□ -0.3
SHMT1-202ENST00000352886 CASC2Q6XLA1 102 aa13.19□□□□□ -0.3
SHMT1-202ENST00000352886 DNHD1Q96M86 4753 aa13.18□□□□□ -0.3
SHMT1-202ENST00000352886 DNAH8Q96JB1 4490 aa13.18□□□□□ -0.3
SHMT1-202ENST00000352886 FRAS1Q86XX4 4008 aa13.17□□□□□ -0.3
SHMT1-202ENST00000352886 C1orf134Q5TEV5 83 aa13.17□□□□□ -0.3
SHMT1-202ENST00000352886 ZNF706Q9Y5V0 76 aaPredicted RBP13.17□□□□□ -0.3
SHMT1-202ENST00000352886 FBN3Q75N90 2809 aa13.15□□□□□ -0.3
SHMT1-202ENST00000352886 SEC61GP60059 68 aa13.14□□□□□ -0.31
SHMT1-202ENST00000352886 TGP01266 2768 aa13.14□□□□□ -0.31
SHMT1-202ENST00000352886 WWC2-AS2Q96NR7 200 aa13.13□□□□□ -0.31
SHMT1-202ENST00000352886 ZNF861PO60384 105 aa13.12□□□□□ -0.31
SHMT1-202ENST00000352886 MP68P56378 58 aa13.11□□□□□ -0.31
SHMT1-202ENST00000352886 ANAPC11Q9NYG5 84 aa13.11□□□□□ -0.31
SHMT1-202ENST00000352886 Q96NJ1 140 aa13.11□□□□□ -0.31
SHMT1-202ENST00000352886 LY6G6CO95867 125 aa13.1□□□□□ -0.31
SHMT1-202ENST00000352886 MOBPQ13875 183 aa13.1□□□□□ -0.31
SHMT1-202ENST00000352886 NDUFB1O75438 58 aa13.08□□□□□ -0.32
SHMT1-202ENST00000352886 MMP24-AS1A0A0U1RRL7 71 aa13.08□□□□□ -0.32
SHMT1-202ENST00000352886 hDV103S1A0JD37 113 aa13.08□□□□□ -0.32
SHMT1-202ENST00000352886 LINC00208Q96KT6 92 aa13.06□□□□□ -0.32
SHMT1-202ENST00000352886 H0Y9P7 68 aa13.04□□□□□ -0.32
SHMT1-202ENST00000352886 TRAV22A0A0B4J277 110 aa13.02□□□□□ -0.33
SHMT1-202ENST00000352886 IGLV7-43P04211 117 aa12.99□□□□□ -0.33
SHMT1-202ENST00000352886 PRR4Q16378 134 aa12.99□□□□□ -0.33
SHMT1-202ENST00000352886 Q1T7F1 81 aa12.99□□□□□ -0.33
SHMT1-202ENST00000352886 C1orf64Q8NEQ6 169 aa12.99□□□□□ -0.33
SHMT1-202ENST00000352886 DNAH6Q9C0G6 4158 aa12.98□□□□□ -0.33
SHMT1-202ENST00000352886 H3BPC8 53 aa12.97□□□□□ -0.33
SHMT1-202ENST00000352886 CYP4F30PQ9H0H9 118 aa12.95□□□□□ -0.34
SHMT1-202ENST00000352886 C8orf17Q9NRJ1 99 aa12.94□□□□□ -0.34
SHMT1-202ENST00000352886 DNAH11Q96DT5 4516 aa12.94□□□□□ -0.34
SHMT1-202ENST00000352886 DNAH5Q8TE73 4624 aa12.94□□□□□ -0.34
SHMT1-202ENST00000352886 KRTAP10-2P60368 255 aa12.94□□□□□ -0.34
SHMT1-202ENST00000352886 ASB16-AS1Q495Z4 193 aa12.93□□□□□ -0.34
SHMT1-202ENST00000352886 IGHV6-1A0A0B4J1U7 121 aa12.93□□□□□ -0.34
SHMT1-202ENST00000352886 PMAIP1Q13794 54 aa12.92□□□□□ -0.34
SHMT1-202ENST00000352886 A0A1B0GVX0 72 aa12.92□□□□□ -0.34
SHMT1-202ENST00000352886 CIRBP-AS1Q8TBR5 109 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms