RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 A0A096LNI7 61 aa8.17□□□□□ -1.1
CLK3-201ENST00000345005 SCXQ7RTU7 201 aa8.16□□□□□ -1.1
CLK3-201ENST00000345005 OCR1Q9BZK8 76 aa8.16□□□□□ -1.1
CLK3-201ENST00000345005 LINC00474Q9P2X8 69 aa8.16□□□□□ -1.1
CLK3-201ENST00000345005 RYR2Q92736 4967 aa8.16□□□□□ -1.1
CLK3-201ENST00000345005 A0A087WTM6 91 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 A0A0U1RQV1 116 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 PRYO14603 147 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 C1orf134Q5TEV5 83 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 KRTAP7-1Q8IUC3 87 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 LINC00476Q8WZB0 136 aa8.15□□□□□ -1.1
CLK3-201ENST00000345005 IGLV1-50A0A075B6I6 118 aa8.15□□□□□ -1.11
CLK3-201ENST00000345005 IGKV2-24A0A0C4DH68 120 aa8.15□□□□□ -1.11
CLK3-201ENST00000345005 MRPL55Q7Z7F7 128 aaKnown RBP8.15□□□□□ -1.11
CLK3-201ENST00000345005 Q1T7F1 81 aa8.14□□□□□ -1.11
CLK3-201ENST00000345005 RPL37AP8A6NKH3 93 aa8.13□□□□□ -1.11
CLK3-201ENST00000345005 PMAIP1Q13794 54 aa8.13□□□□□ -1.11
CLK3-201ENST00000345005 Q8N377 158 aa8.11□□□□□ -1.11
CLK3-201ENST00000345005 A0A1W2PNN7 141 aa8.1□□□□□ -1.11
CLK3-201ENST00000345005 Q6ZRX8 168 aa8.1□□□□□ -1.11
CLK3-201ENST00000345005 SPRR1AP35321 89 aa8.09□□□□□ -1.11
CLK3-201ENST00000345005 LCE6AA0A183 80 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 ETDCA0A1B0GVM5 59 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 SPRR4Q96PI1 79 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 HYDINQ4G0P3 5121 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 KRTAP4-16G5E9R7 235 aaPredicted RBP8.08□□□□□ -1.12
CLK3-201ENST00000345005 CHTF8P0CG12 524 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 Q8NBF4 154 aa8.08□□□□□ -1.12
CLK3-201ENST00000345005 C1orf137Q5JT78 98 aa8.07□□□□□ -1.12
CLK3-201ENST00000345005 REG3GQ6UW15 175 aa8.07□□□□□ -1.12
CLK3-201ENST00000345005 DEFB105AQ8NG35 78 aa8.07□□□□□ -1.12
CLK3-201ENST00000345005 KMT2AQ03164 3969 aa8.07□□□□□ -1.12
CLK3-201ENST00000345005 DNAH6Q9C0G6 4158 aa8.06□□□□□ -1.12
CLK3-201ENST00000345005 hDV103S1A0JD37 113 aa8.06□□□□□ -1.12
CLK3-201ENST00000345005 RTL8CO15255 209 aa8.06□□□□□ -1.12
CLK3-201ENST00000345005 TNP2Q05952 138 aa8.06□□□□□ -1.12
CLK3-201ENST00000345005 Q8N9L7 120 aa8.06□□□□□ -1.12
CLK3-201ENST00000345005 CD164Q04900 197 aa8.05□□□□□ -1.12
CLK3-201ENST00000345005 ALMS1Q8TCU4 4167 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 MPLKIPQ8TAP9 179 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 A0A1W2PNM2 257 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 FAM229BQ4G0N7 80 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 SPACA4Q8TDM5 124 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 CYP4F30PQ9H0H9 118 aa8.03□□□□□ -1.12
CLK3-201ENST00000345005 IGLV5-52A0A0A0MRZ9 124 aa8.02□□□□□ -1.13
CLK3-201ENST00000345005 NDUFB1O75438 58 aa8.02□□□□□ -1.13
CLK3-201ENST00000345005 UBE2BP63146 152 aa8.02□□□□□ -1.13
CLK3-201ENST00000345005 PHF5AQ7RTV0 110 aaKnown RBP8.02□□□□□ -1.13
CLK3-201ENST00000345005 HIGD2AQ9BW72 106 aa8.02□□□□□ -1.13
CLK3-201ENST00000345005 Q9BRP9 147 aa8.01□□□□□ -1.13
CLK3-201ENST00000345005 PANO1I0J062 215 aa8.01□□□□□ -1.13
CLK3-201ENST00000345005 SMIM29Q86T20 159 aa8.01□□□□□ -1.13
CLK3-201ENST00000345005 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.01□□□□□ -1.13
CLK3-201ENST00000345005 DNAH2Q9P225 4427 aa8□□□□□ -1.13
CLK3-201ENST00000345005 EPPK1P58107 5090 aaKnown RBP7.99□□□□□ -1.13
CLK3-201ENST00000345005 FAM30AQ9NZY2 134 aa7.99□□□□□ -1.13
CLK3-201ENST00000345005 HECTD4Q9Y4D8 3996 aa7.98□□□□□ -1.13
CLK3-201ENST00000345005 ZCCHC13Q8WW36 166 aaKnown RBP7.98□□□□□ -1.13
CLK3-201ENST00000345005 DNAH17Q9UFH2 4485 aa7.97□□□□□ -1.13
CLK3-201ENST00000345005 HCG22E2RYF7 251 aa7.96□□□□□ -1.13
CLK3-201ENST00000345005 DSCR10P59022 87 aa7.96□□□□□ -1.13
CLK3-201ENST00000345005 H0Y9J4 135 aa7.96□□□□□ -1.14
CLK3-201ENST00000345005 KRTAP11-1Q8IUC1 163 aa7.96□□□□□ -1.14
CLK3-201ENST00000345005 PLAC8Q9NZF1 115 aa7.95□□□□□ -1.14
CLK3-201ENST00000345005 IGLV8-61A0A075B6I0 122 aa7.94□□□□□ -1.14
CLK3-201ENST00000345005 H3BPC8 53 aa7.94□□□□□ -1.14
CLK3-201ENST00000345005 MP68P56378 58 aa7.94□□□□□ -1.14
CLK3-201ENST00000345005 PRLHP81277 87 aa7.94□□□□□ -1.14
CLK3-201ENST00000345005 C1orf64Q8NEQ6 169 aa7.93□□□□□ -1.14
CLK3-201ENST00000345005 ST20-AS1Q8NBB2 130 aa7.92□□□□□ -1.14
CLK3-201ENST00000345005 K7EQZ3 153 aa7.92□□□□□ -1.14
CLK3-201ENST00000345005 UBE2AP49459 152 aa7.92□□□□□ -1.14
CLK3-201ENST00000345005 KRTAP10-2P60368 255 aa7.92□□□□□ -1.14
CLK3-201ENST00000345005 FRAS1Q86XX4 4008 aa7.91□□□□□ -1.14
CLK3-201ENST00000345005 TRAV22A0A0B4J277 110 aa7.89□□□□□ -1.15
CLK3-201ENST00000345005 LIMD2Q9BT23 127 aa7.89□□□□□ -1.15
CLK3-201ENST00000345005 BIRC6Q9NR09 4857 aa7.88□□□□□ -1.15
CLK3-201ENST00000345005 NDUFS5O43920 106 aa7.87□□□□□ -1.15
CLK3-201ENST00000345005 SPANXA2-OT1Q8N9U9 137 aa7.87□□□□□ -1.15
CLK3-201ENST00000345005 IGFL1Q6UW32 110 aa7.87□□□□□ -1.15
CLK3-201ENST00000345005 KRTAP13-1Q8IUC0 172 aa7.87□□□□□ -1.15
CLK3-201ENST00000345005 PSORS1C2Q9UIG4 136 aa7.85□□□□□ -1.15
CLK3-201ENST00000345005 KTN1-AS1Q86SY8 53 aa7.85□□□□□ -1.15
CLK3-201ENST00000345005 SPRR1BP22528 89 aa7.83□□□□□ -1.16
CLK3-201ENST00000345005 ATP11AUNQ6ZP68 121 aa7.83□□□□□ -1.16
CLK3-201ENST00000345005 KRTAP10-1P60331 282 aa7.82□□□□□ -1.16
CLK3-201ENST00000345005 Q6ZSA8 131 aa7.82□□□□□ -1.16
CLK3-201ENST00000345005 CIRBP-AS1Q8TBR5 109 aa7.82□□□□□ -1.16
CLK3-201ENST00000345005 DNAH11Q96DT5 4516 aa7.82□□□□□ -1.16
CLK3-201ENST00000345005 PKD1P98161 4303 aa7.81□□□□□ -1.16
CLK3-201ENST00000345005 A0A087WSZ3 146 aa7.81□□□□□ -1.16
CLK3-201ENST00000345005 KRTAP29-1A8MX34 341 aaPredicted RBP7.8□□□□□ -1.16
CLK3-201ENST00000345005 SRRM2Q9UQ35 2752 aaKnown RBP7.8□□□□□ -1.16
CLK3-201ENST00000345005 A8MWP4 228 aa7.79□□□□□ -1.16
CLK3-201ENST00000345005 ZNF861PO60384 105 aa7.79□□□□□ -1.16
CLK3-201ENST00000345005 CASC2Q6XLA1 102 aa7.79□□□□□ -1.16
CLK3-201ENST00000345005 FAT2Q9NYQ8 4349 aa7.79□□□□□ -1.16
CLK3-201ENST00000345005 DNAH5Q8TE73 4624 aa7.79□□□□□ -1.16
CLK3-201ENST00000345005 Q5VV11 94 aa7.78□□□□□ -1.16
CLK3-201ENST00000345005 WFDC13Q8IUB5 93 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms