RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DIRC1Q969H9 104 aa6.31□□□□□ -1.4
HMGB3-201ENST00000325307 DNAL4O96015 105 aa6.31□□□□□ -1.4
HMGB3-201ENST00000325307 A0A1B0GVY2 172 aa6.3□□□□□ -1.4
HMGB3-201ENST00000325307 HAMPP81172 84 aa6.3□□□□□ -1.4
HMGB3-201ENST00000325307 KLKP1Q107X0 134 aa6.3□□□□□ -1.4
HMGB3-201ENST00000325307 FAT2Q9NYQ8 4349 aa6.3□□□□□ -1.4
HMGB3-201ENST00000325307 KCNQ1DNQ9H478 68 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 IGKV3D-7A0A0C4DH55 119 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 FAM229BQ4G0N7 80 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 PLAC8Q9NZF1 115 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 PRYO14603 147 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 C14orf132Q9NPU4 83 aa6.29□□□□□ -1.4
HMGB3-201ENST00000325307 ETDCA0A1B0GVM5 59 aa6.28□□□□□ -1.4
HMGB3-201ENST00000325307 REG3GQ6UW15 175 aa6.28□□□□□ -1.4
HMGB3-201ENST00000325307 C20orf197Q8N268 126 aa6.28□□□□□ -1.4
HMGB3-201ENST00000325307 CIRBP-AS1Q8TBR5 109 aa6.28□□□□□ -1.4
HMGB3-201ENST00000325307 COX7BP24311 80 aa6.27□□□□□ -1.41
HMGB3-201ENST00000325307 ATP5EP56381 51 aaPredicted RBP6.27□□□□□ -1.41
HMGB3-201ENST00000325307 SCXQ7RTU7 201 aa6.27□□□□□ -1.41
HMGB3-201ENST00000325307 DNAH11Q96DT5 4516 aa6.27□□□□□ -1.41
HMGB3-201ENST00000325307 RBM3P98179 157 aaKnown RBP6.26□□□□□ -1.41
HMGB3-201ENST00000325307 Q6ZSA8 131 aa6.26□□□□□ -1.41
HMGB3-201ENST00000325307 LINC00575Q6W349 94 aa6.26□□□□□ -1.41
HMGB3-201ENST00000325307 KRTAP11-1Q8IUC1 163 aa6.26□□□□□ -1.41
HMGB3-201ENST00000325307 GHRHP01286 108 aa6.26□□□□□ -1.41
HMGB3-201ENST00000325307 PKD1P98161 4303 aa6.25□□□□□ -1.41
HMGB3-201ENST00000325307 ORMDL1Q9P0S3 153 aa6.25□□□□□ -1.41
HMGB3-201ENST00000325307 ELOF1P60002 83 aaKnown RBP6.24□□□□□ -1.41
HMGB3-201ENST00000325307 TRAV7A0A075B6U4 112 aa6.24□□□□□ -1.41
HMGB3-201ENST00000325307 MPLKIPQ8TAP9 179 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 SPRR1AP35321 89 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 RYR3Q15413 4870 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 UBE2AP49459 152 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 PRLHP81277 87 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 DNAH5Q8TE73 4624 aa6.23□□□□□ -1.41
HMGB3-201ENST00000325307 Q6ZRX8 168 aa6.22□□□□□ -1.41
HMGB3-201ENST00000325307 PKHD1P08F94 4074 aa6.22□□□□□ -1.41
HMGB3-201ENST00000325307 JMJD7-PLA2G4BH0Y9G9 81 aa6.22□□□□□ -1.41
HMGB3-201ENST00000325307 LINC00528Q8N1L1 170 aa6.22□□□□□ -1.41
HMGB3-201ENST00000325307 PSORS1C2Q9UIG4 136 aa6.22□□□□□ -1.41
HMGB3-201ENST00000325307 C1orf137Q5JT78 98 aa6.21□□□□□ -1.41
HMGB3-201ENST00000325307 KRTAP4-16G5E9R7 235 aaPredicted RBP6.21□□□□□ -1.42
HMGB3-201ENST00000325307 HIGD2AQ9BW72 106 aa6.21□□□□□ -1.42
HMGB3-201ENST00000325307 F8WEM9 126 aa6.2□□□□□ -1.42
HMGB3-201ENST00000325307 DHRS4-AS1Q9P1J3 65 aa6.2□□□□□ -1.42
HMGB3-201ENST00000325307 TMEM256-PLSCR3K7ERE1 68 aa6.19□□□□□ -1.42
HMGB3-201ENST00000325307 NDUFC1O43677 76 aa6.19□□□□□ -1.42
HMGB3-201ENST00000325307 Q6ZQY7 126 aa6.19□□□□□ -1.42
HMGB3-201ENST00000325307 Q9BRP9 147 aa6.19□□□□□ -1.42
HMGB3-201ENST00000325307 LOC110117498A0A087WWA1 95 aa6.18□□□□□ -1.42
HMGB3-201ENST00000325307 Q1T7F1 81 aa6.18□□□□□ -1.42
HMGB3-201ENST00000325307 Q6ZVQ6 151 aa6.18□□□□□ -1.42
HMGB3-201ENST00000325307 SMR3BP02814 79 aaPredicted RBP6.17□□□□□ -1.42
HMGB3-201ENST00000325307 TRBV7-4A0A0J9YYF1 115 aa6.17□□□□□ -1.42
HMGB3-201ENST00000325307 DEFB105AQ8NG35 78 aa6.17□□□□□ -1.42
HMGB3-201ENST00000325307 NDUFS5O43920 106 aa6.16□□□□□ -1.42
HMGB3-201ENST00000325307 ERC2-IT1O76042 136 aa6.16□□□□□ -1.42
HMGB3-201ENST00000325307 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.16□□□□□ -1.42
HMGB3-201ENST00000325307 Q6ZQT0 140 aa6.16□□□□□ -1.42
HMGB3-201ENST00000325307 CXCL6P80162 114 aa6.15□□□□□ -1.42
HMGB3-201ENST00000325307 H0Y9J4 135 aa6.15□□□□□ -1.43
HMGB3-201ENST00000325307 ST20-AS1Q8NBB2 130 aa6.14□□□□□ -1.43
HMGB3-201ENST00000325307 LRP1BQ9NZR2 4599 aa6.14□□□□□ -1.43
HMGB3-201ENST00000325307 IGLV7-43P04211 117 aa6.14□□□□□ -1.43
HMGB3-201ENST00000325307 UBL5Q9BZL1 73 aa6.14□□□□□ -1.43
HMGB3-201ENST00000325307 DYNC1H1Q14204 4646 aaKnown RBP6.13□□□□□ -1.43
HMGB3-201ENST00000325307 ZNF861PO60384 105 aa6.13□□□□□ -1.43
HMGB3-201ENST00000325307 LINC01547P58512 204 aaPredicted RBP6.13□□□□□ -1.43
HMGB3-201ENST00000325307 A8MUN3 132 aa6.13□□□□□ -1.43
HMGB3-201ENST00000325307 RPL37AP61513 92 aaKnown RBP6.13□□□□□ -1.43
HMGB3-201ENST00000325307 KRTAP13-1Q8IUC0 172 aa6.13□□□□□ -1.43
HMGB3-201ENST00000325307 DNAH8Q96JB1 4490 aa6.13□□□□□ -1.43
HMGB3-201ENST00000325307 SNURFQ9Y675 71 aa6.12□□□□□ -1.43
HMGB3-201ENST00000325307 A6NN06 94 aa6.12□□□□□ -1.43
HMGB3-201ENST00000325307 A8MU10 97 aa6.11□□□□□ -1.43
HMGB3-201ENST00000325307 SRRM2Q9UQ35 2752 aaKnown RBP6.1□□□□□ -1.43
HMGB3-201ENST00000325307 H3BQ85 93 aa6.1□□□□□ -1.43
HMGB3-201ENST00000325307 LCA10Q71F78 164 aa6.09□□□□□ -1.43
HMGB3-201ENST00000325307 Q8N377 158 aa6.09□□□□□ -1.43
HMGB3-201ENST00000325307 CDK2AP2O75956 126 aa6.09□□□□□ -1.43
HMGB3-201ENST00000325307 ZNF706Q9Y5V0 76 aaPredicted RBP6.08□□□□□ -1.44
HMGB3-201ENST00000325307 IGLV5-48A0A075B6I7 105 aa6.07□□□□□ -1.44
HMGB3-201ENST00000325307 PDE6GP18545 87 aa6.07□□□□□ -1.44
HMGB3-201ENST00000325307 FAM229AH3BQW9 127 aa6.07□□□□□ -1.44
HMGB3-201ENST00000325307 SPRR4Q96PI1 79 aa6.06□□□□□ -1.44
HMGB3-201ENST00000325307 hDV103S1A0JD37 113 aa6.06□□□□□ -1.44
HMGB3-201ENST00000325307 C7orf65Q6ZTY9 151 aa6.06□□□□□ -1.44
HMGB3-201ENST00000325307 ANAPC11Q9NYG5 84 aa6.05□□□□□ -1.44
HMGB3-201ENST00000325307 PLA2G1BP04054 148 aaKnown RBP6.05□□□□□ -1.44
HMGB3-201ENST00000325307 APOBP04114 4563 aaKnown RBP6.04□□□□□ -1.44
HMGB3-201ENST00000325307 TRAV22A0A0B4J277 110 aa6.04□□□□□ -1.44
HMGB3-201ENST00000325307 TMEM254Q8TBM7 123 aa6.04□□□□□ -1.44
HMGB3-201ENST00000325307 OCR1Q9BZK8 76 aa6.03□□□□□ -1.44
HMGB3-201ENST00000325307 VPS13BQ7Z7G8 4022 aa6.03□□□□□ -1.44
HMGB3-201ENST00000325307 NREPQ16612 68 aa6.03□□□□□ -1.44
HMGB3-201ENST00000325307 Q5VSD8 79 aa6.03□□□□□ -1.44
HMGB3-201ENST00000325307 IGLV9-49A0A0B4J1Y8 123 aa6.02□□□□□ -1.45
HMGB3-201ENST00000325307 SPINK6Q6UWN8 80 aa6.02□□□□□ -1.45
HMGB3-201ENST00000325307 ATP11AUNQ6ZP68 121 aa6.02□□□□□ -1.45
HMGB3-201ENST00000325307 SMIM29Q86T20 159 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms