RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PANO1I0J062 215 aa9.8□□□□□ -0.84
LSM6-201ENST00000296581 PRR15Q8IV56 129 aa9.8□□□□□ -0.84
LSM6-201ENST00000296581 SPACA4Q8TDM5 124 aa9.8□□□□□ -0.84
LSM6-201ENST00000296581 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.79□□□□□ -0.84
LSM6-201ENST00000296581 TMEM256-PLSCR3K7ERE1 68 aa9.79□□□□□ -0.84
LSM6-201ENST00000296581 FUSP35637 526 aaKnown RBP eCLIP9.79□□□□□ -0.84
LSM6-201ENST00000296581 Q6ZQY7 126 aa9.79□□□□□ -0.84
LSM6-201ENST00000296581 HECTD4Q9Y4D8 3996 aa9.78□□□□□ -0.84
LSM6-201ENST00000296581 TRBV7-4A0A0J9YYF1 115 aa9.78□□□□□ -0.84
LSM6-201ENST00000296581 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.78□□□□□ -0.84
LSM6-201ENST00000296581 IGLV5-52A0A0A0MRZ9 124 aa9.77□□□□□ -0.84
LSM6-201ENST00000296581 REG3GQ6UW15 175 aa9.77□□□□□ -0.84
LSM6-201ENST00000296581 Q6ZRX8 168 aa9.77□□□□□ -0.84
LSM6-201ENST00000296581 ETDCA0A1B0GVM5 59 aa9.77□□□□□ -0.85
LSM6-201ENST00000296581 HYDINQ4G0P3 5121 aa9.77□□□□□ -0.85
LSM6-201ENST00000296581 H3BQ85 93 aa9.76□□□□□ -0.85
LSM6-201ENST00000296581 LINC01547P58512 204 aaPredicted RBP9.76□□□□□ -0.85
LSM6-201ENST00000296581 PHF5AQ7RTV0 110 aaKnown RBP9.76□□□□□ -0.85
LSM6-201ENST00000296581 FRAS1Q86XX4 4008 aa9.76□□□□□ -0.85
LSM6-201ENST00000296581 DHRS4-AS1Q9P1J3 65 aa9.75□□□□□ -0.85
LSM6-201ENST00000296581 Q9BRP9 147 aa9.73□□□□□ -0.85
LSM6-201ENST00000296581 KRTAP11-1Q8IUC1 163 aa9.73□□□□□ -0.85
LSM6-201ENST00000296581 UBE2BP63146 152 aa9.72□□□□□ -0.85
LSM6-201ENST00000296581 HAMPP81172 84 aa9.72□□□□□ -0.85
LSM6-201ENST00000296581 CD164Q04900 197 aa9.72□□□□□ -0.85
LSM6-201ENST00000296581 LCE6AA0A183 80 aa9.71□□□□□ -0.85
LSM6-201ENST00000296581 TMEM254Q8TBM7 123 aa9.71□□□□□ -0.85
LSM6-201ENST00000296581 LAMTOR3Q9UHA4 124 aa9.71□□□□□ -0.85
LSM6-201ENST00000296581 KRTAP10-2P60368 255 aa9.7□□□□□ -0.86
LSM6-201ENST00000296581 Q6ZQT0 140 aa9.7□□□□□ -0.86
LSM6-201ENST00000296581 Q6ZVQ6 151 aa9.7□□□□□ -0.86
LSM6-201ENST00000296581 CXCL6P80162 114 aa9.69□□□□□ -0.86
LSM6-201ENST00000296581 NREPQ16612 68 aa9.69□□□□□ -0.86
LSM6-201ENST00000296581 PLAC8Q9NZF1 115 aa9.69□□□□□ -0.86
LSM6-201ENST00000296581 DNAH11Q96DT5 4516 aa9.68□□□□□ -0.86
LSM6-201ENST00000296581 SACSQ9NZJ4 4579 aa9.67□□□□□ -0.86
LSM6-201ENST00000296581 ERC2-IT1O76042 136 aa9.67□□□□□ -0.86
LSM6-201ENST00000296581 LOC110117498A0A087WWA1 95 aa9.66□□□□□ -0.86
LSM6-201ENST00000296581 H0Y9J4 135 aa9.66□□□□□ -0.86
LSM6-201ENST00000296581 PRLHP81277 87 aa9.65□□□□□ -0.86
LSM6-201ENST00000296581 FAT2Q9NYQ8 4349 aa9.64□□□□□ -0.87
LSM6-201ENST00000296581 IGLV5-48A0A075B6I7 105 aa9.64□□□□□ -0.87
LSM6-201ENST00000296581 Q8N377 158 aa9.64□□□□□ -0.87
LSM6-201ENST00000296581 DNAH5Q8TE73 4624 aa9.64□□□□□ -0.87
LSM6-201ENST00000296581 ST20-AS1Q8NBB2 130 aa9.62□□□□□ -0.87
LSM6-201ENST00000296581 BPY2O14599 106 aa9.61□□□□□ -0.87
LSM6-201ENST00000296581 DEFB105AQ8NG35 78 aa9.61□□□□□ -0.87
LSM6-201ENST00000296581 Q1T7F1 81 aa9.6□□□□□ -0.87
LSM6-201ENST00000296581 KRTAP13-1Q8IUC0 172 aa9.6□□□□□ -0.87
LSM6-201ENST00000296581 PKD1P98161 4303 aa9.6□□□□□ -0.87
LSM6-201ENST00000296581 HIGD2AQ9BW72 106 aa9.59□□□□□ -0.87
LSM6-201ENST00000296581 Q6ZSA8 131 aa9.59□□□□□ -0.87
LSM6-201ENST00000296581 SCXQ7RTU7 201 aa9.59□□□□□ -0.87
LSM6-201ENST00000296581 FAM30AQ9NZY2 134 aa9.59□□□□□ -0.87
LSM6-201ENST00000296581 UBE2AP49459 152 aa9.58□□□□□ -0.88
LSM6-201ENST00000296581 KRTAP10-1P60331 282 aa9.58□□□□□ -0.88
LSM6-201ENST00000296581 hDV103S1A0JD37 113 aa9.58□□□□□ -0.88
LSM6-201ENST00000296581 DNAH8Q96JB1 4490 aa9.58□□□□□ -0.88
LSM6-201ENST00000296581 PDE6GP18545 87 aa9.57□□□□□ -0.88
LSM6-201ENST00000296581 PSORS1C2Q9UIG4 136 aa9.56□□□□□ -0.88
LSM6-201ENST00000296581 CIRBP-AS1Q8TBR5 109 aa9.56□□□□□ -0.88
LSM6-201ENST00000296581 OCR1Q9BZK8 76 aa9.54□□□□□ -0.88
LSM6-201ENST00000296581 RYR2Q92736 4967 aa9.54□□□□□ -0.88
LSM6-201ENST00000296581 SMIM29Q86T20 159 aa9.53□□□□□ -0.88
LSM6-201ENST00000296581 PSPHP1O15172 72 aa9.52□□□□□ -0.89
LSM6-201ENST00000296581 SPRR1BP22528 89 aa9.52□□□□□ -0.89
LSM6-201ENST00000296581 C1orf137Q5JT78 98 aa9.51□□□□□ -0.89
LSM6-201ENST00000296581 TRAV22A0A0B4J277 110 aa9.49□□□□□ -0.89
LSM6-201ENST00000296581 A0A1B0GVY2 172 aa9.49□□□□□ -0.89
LSM6-201ENST00000296581 C1orf64Q8NEQ6 169 aa9.48□□□□□ -0.89
LSM6-201ENST00000296581 RBM12B-AS1Q9P1G2 102 aa9.48□□□□□ -0.89
LSM6-201ENST00000296581 ZNF861PO60384 105 aa9.47□□□□□ -0.89
LSM6-201ENST00000296581 IGKV4-1P06312 121 aa9.47□□□□□ -0.89
LSM6-201ENST00000296581 Q8N9L7 120 aa9.47□□□□□ -0.89
LSM6-201ENST00000296581 KTN1-AS1Q86SY8 53 aa9.46□□□□□ -0.9
LSM6-201ENST00000296581 IGLV8-61A0A075B6I0 122 aa9.45□□□□□ -0.9
LSM6-201ENST00000296581 KMT2CQ8NEZ4 4911 aaKnown RBP9.45□□□□□ -0.9
LSM6-201ENST00000296581 IGLV7-43P04211 117 aa9.45□□□□□ -0.9
LSM6-201ENST00000296581 A8MU10 97 aa9.44□□□□□ -0.9
LSM6-201ENST00000296581 SPRR4Q96PI1 79 aa9.44□□□□□ -0.9
LSM6-201ENST00000296581 ZNF706Q9Y5V0 76 aaPredicted RBP9.42□□□□□ -0.9
LSM6-201ENST00000296581 SRRM2Q9UQ35 2752 aaKnown RBP9.42□□□□□ -0.9
LSM6-201ENST00000296581 LINC00483Q53H64 154 aa9.42□□□□□ -0.9
LSM6-201ENST00000296581 A0A1W2PNM2 257 aa9.4□□□□□ -0.9
LSM6-201ENST00000296581 A8MUN3 132 aa9.4□□□□□ -0.9
LSM6-201ENST00000296581 Q8NBF4 154 aa9.4□□□□□ -0.9
LSM6-201ENST00000296581 A0A1B0GW54 56 aa9.39□□□□□ -0.91
LSM6-201ENST00000296581 IGFL1Q6UW32 110 aa9.39□□□□□ -0.91
LSM6-201ENST00000296581 C4orf48Q5BLP8 95 aa9.38□□□□□ -0.91
LSM6-201ENST00000296581 PKHD1P08F94 4074 aa9.37□□□□□ -0.91
LSM6-201ENST00000296581 LRP1BQ9NZR2 4599 aa9.37□□□□□ -0.91
LSM6-201ENST00000296581 Q5VV11 94 aa9.36□□□□□ -0.91
LSM6-201ENST00000296581 DYNC1H1Q14204 4646 aaKnown RBP9.36□□□□□ -0.91
LSM6-201ENST00000296581 ZCCHC13Q8WW36 166 aaKnown RBP9.35□□□□□ -0.91
LSM6-201ENST00000296581 CYP4F30PQ9H0H9 118 aa9.34□□□□□ -0.91
LSM6-201ENST00000296581 A0A0G2JQZ4 141 aa9.34□□□□□ -0.91
LSM6-201ENST00000296581 RPL37AP61513 92 aaKnown RBP9.3□□□□□ -0.92
LSM6-201ENST00000296581 NDUFS5O43920 106 aa9.3□□□□□ -0.92
LSM6-201ENST00000296581 IGLV9-49A0A0B4J1Y8 123 aa9.29□□□□□ -0.92
LSM6-201ENST00000296581 ANAPC11Q9NYG5 84 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms