RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 SPACA4Q8TDM5 124 aa14.88□□□□□ -0.03
TRIM54-201ENST00000296098 DPH3Q96FX2 82 aa14.88□□□□□ -0.03
TRIM54-201ENST00000296098 C20orf197Q8N268 126 aa14.88□□□□□ -0.03
TRIM54-201ENST00000296098 TMEM258P61165 79 aa14.87□□□□□ -0.03
TRIM54-201ENST00000296098 SPRR1BP22528 89 aa14.86□□□□□ -0.03
TRIM54-201ENST00000296098 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14.86□□□□□ -0.03
TRIM54-201ENST00000296098 MEGF8Q7Z7M0 2845 aa14.85□□□□□ -0.03
TRIM54-201ENST00000296098 A0A0G2JQZ4 141 aa14.85□□□□□ -0.03
TRIM54-201ENST00000296098 Q6ZR54 194 aa14.85□□□□□ -0.03
TRIM54-201ENST00000296098 RTL8CO15255 209 aa14.8□□□□□ -0.04
TRIM54-201ENST00000296098 KRTAP13-1Q8IUC0 172 aa14.8□□□□□ -0.04
TRIM54-201ENST00000296098 DSCR10P59022 87 aa14.77□□□□□ -0.04
TRIM54-201ENST00000296098 KLKP1Q107X0 134 aa14.76□□□□□ -0.05
TRIM54-201ENST00000296098 A0A087WSZ3 146 aa14.75□□□□□ -0.05
TRIM54-201ENST00000296098 OCR1Q9BZK8 76 aa14.72□□□□□ -0.05
TRIM54-201ENST00000296098 K7EQZ3 153 aa14.71□□□□□ -0.05
TRIM54-201ENST00000296098 C1orf134Q5TEV5 83 aa14.71□□□□□ -0.05
TRIM54-201ENST00000296098 SNURFQ9Y675 71 aa14.7□□□□□ -0.06
TRIM54-201ENST00000296098 DNHD1Q96M86 4753 aa14.69□□□□□ -0.06
TRIM54-201ENST00000296098 J3KT08 172 aa14.68□□□□□ -0.06
TRIM54-201ENST00000296098 H7BZZ5 65 aa14.67□□□□□ -0.06
TRIM54-201ENST00000296098 IGLV5-52A0A0A0MRZ9 124 aa14.66□□□□□ -0.06
TRIM54-201ENST00000296098 PLAC8Q9NZF1 115 aa14.66□□□□□ -0.06
TRIM54-201ENST00000296098 LY6G6CO95867 125 aa14.64□□□□□ -0.07
TRIM54-201ENST00000296098 TMEM254Q8TBM7 123 aa14.64□□□□□ -0.07
TRIM54-201ENST00000296098 DEFB116Q30KQ4 102 aa14.63□□□□□ -0.07
TRIM54-201ENST00000296098 SRRM2Q9UQ35 2752 aaKnown RBP14.63□□□□□ -0.07
TRIM54-201ENST00000296098 RPS28P62857 69 aaKnown RBP14.62□□□□□ -0.07
TRIM54-201ENST00000296098 PSORS1C2Q9UIG4 136 aa14.61□□□□□ -0.07
TRIM54-201ENST00000296098 DNAH2Q9P225 4427 aa14.61□□□□□ -0.07
TRIM54-201ENST00000296098 HECTD4Q9Y4D8 3996 aa14.61□□□□□ -0.07
TRIM54-201ENST00000296098 KMT2AQ03164 3969 aa14.61□□□□□ -0.07
TRIM54-201ENST00000296098 DNAH17Q9UFH2 4485 aa14.61□□□□□ -0.07
TRIM54-201ENST00000296098 FAM236DA0A1B0GTK5 79 aa14.6□□□□□ -0.07
TRIM54-201ENST00000296098 FAM236CP0DP71 79 aa14.6□□□□□ -0.07
TRIM54-201ENST00000296098 HCG22E2RYF7 251 aa14.59□□□□□ -0.07
TRIM54-201ENST00000296098 NDUFC1O43677 76 aa14.59□□□□□ -0.07
TRIM54-201ENST00000296098 FAM30AQ9NZY2 134 aa14.59□□□□□ -0.07
TRIM54-201ENST00000296098 LINC00483Q53H64 154 aa14.58□□□□□ -0.08
TRIM54-201ENST00000296098 ZNF706Q9Y5V0 76 aaPredicted RBP14.58□□□□□ -0.08
TRIM54-201ENST00000296098 IGLV9-49A0A0B4J1Y8 123 aa14.55□□□□□ -0.08
TRIM54-201ENST00000296098 A0A0U1RQV1 116 aa14.54□□□□□ -0.08
TRIM54-201ENST00000296098 RPL37AP61513 92 aaKnown RBP14.52□□□□□ -0.09
TRIM54-201ENST00000296098 LINC00472Q9H8W2 130 aa14.52□□□□□ -0.09
TRIM54-201ENST00000296098 FBN3Q75N90 2809 aa14.52□□□□□ -0.09
TRIM54-201ENST00000296098 ZNF861PO60384 105 aa14.51□□□□□ -0.09
TRIM54-201ENST00000296098 LCE6AA0A183 80 aa14.49□□□□□ -0.09
TRIM54-201ENST00000296098 WFDC13Q8IUB5 93 aa14.47□□□□□ -0.09
TRIM54-201ENST00000296098 WWC2-AS2Q96NR7 200 aa14.47□□□□□ -0.09
TRIM54-201ENST00000296098 A8MWP4 228 aa14.46□□□□□ -0.09
TRIM54-201ENST00000296098 OXTP01178 125 aa14.46□□□□□ -0.1
TRIM54-201ENST00000296098 PRR15Q8IV56 129 aa14.46□□□□□ -0.1
TRIM54-201ENST00000296098 DNAH6Q9C0G6 4158 aa14.46□□□□□ -0.1
TRIM54-201ENST00000296098 TGP01266 2768 aa14.45□□□□□ -0.1
TRIM54-201ENST00000296098 ATP5EP56381 51 aaPredicted RBP14.42□□□□□ -0.1
TRIM54-201ENST00000296098 MOBPQ13875 183 aa14.41□□□□□ -0.1
TRIM54-201ENST00000296098 DNAH8Q96JB1 4490 aa14.41□□□□□ -0.1
TRIM54-201ENST00000296098 KRTAP29-1A8MX34 341 aaPredicted RBP14.41□□□□□ -0.1
TRIM54-201ENST00000296098 SERP1Q9Y6X1 66 aa14.41□□□□□ -0.1
TRIM54-201ENST00000296098 IGLV7-43P04211 117 aa14.39□□□□□ -0.11
TRIM54-201ENST00000296098 KRTAP10-2P60368 255 aa14.39□□□□□ -0.11
TRIM54-201ENST00000296098 KRTAP21-3Q3LHN1 58 aa14.39□□□□□ -0.11
TRIM54-201ENST00000296098 CASC2Q6XLA1 102 aa14.38□□□□□ -0.11
TRIM54-201ENST00000296098 ANAPC11Q9NYG5 84 aa14.38□□□□□ -0.11
TRIM54-201ENST00000296098 C5orf47Q569G3 176 aa14.37□□□□□ -0.11
TRIM54-201ENST00000296098 HRCT1Q6UXD1 115 aa14.37□□□□□ -0.11
TRIM54-201ENST00000296098 Q96NJ1 140 aa14.36□□□□□ -0.11
TRIM54-201ENST00000296098 ALMS1Q8TCU4 4167 aa14.35□□□□□ -0.11
TRIM54-201ENST00000296098 CIRBP-AS1Q8TBR5 109 aa14.33□□□□□ -0.12
TRIM54-201ENST00000296098 ZCCHC13Q8WW36 166 aaKnown RBP14.32□□□□□ -0.12
TRIM54-201ENST00000296098 NDUFB1O75438 58 aa14.32□□□□□ -0.12
TRIM54-201ENST00000296098 MMP24-AS1A0A0U1RRL7 71 aa14.29□□□□□ -0.12
TRIM54-201ENST00000296098 FRAS1Q86XX4 4008 aa14.28□□□□□ -0.12
TRIM54-201ENST00000296098 MP68P56378 58 aa14.25□□□□□ -0.13
TRIM54-201ENST00000296098 Q6ZSA8 131 aa14.24□□□□□ -0.13
TRIM54-201ENST00000296098 DNAH5Q8TE73 4624 aa14.24□□□□□ -0.13
TRIM54-201ENST00000296098 DNAH11Q96DT5 4516 aa14.23□□□□□ -0.13
TRIM54-201ENST00000296098 KRTAP10-1P60331 282 aa14.22□□□□□ -0.13
TRIM54-201ENST00000296098 hDV103S1A0JD37 113 aa14.21□□□□□ -0.13
TRIM54-201ENST00000296098 H0Y9P7 68 aa14.17□□□□□ -0.14
TRIM54-201ENST00000296098 C8orf17Q9NRJ1 99 aa14.17□□□□□ -0.14
TRIM54-201ENST00000296098 A0A1B0GVX0 72 aa14.16□□□□□ -0.14
TRIM54-201ENST00000296098 CDK2AP2O75956 126 aa14.16□□□□□ -0.14
TRIM54-201ENST00000296098 Q5XG85 94 aa14.16□□□□□ -0.14
TRIM54-201ENST00000296098 LINC00208Q96KT6 92 aa14.15□□□□□ -0.14
TRIM54-201ENST00000296098 ASB16-AS1Q495Z4 193 aa14.15□□□□□ -0.14
TRIM54-201ENST00000296098 H3BPC8 53 aa14.14□□□□□ -0.15
TRIM54-201ENST00000296098 IGHV6-1A0A0B4J1U7 121 aa14.13□□□□□ -0.15
TRIM54-201ENST00000296098 TRAV22A0A0B4J277 110 aa14.12□□□□□ -0.15
TRIM54-201ENST00000296098 CD164Q04900 197 aa14.12□□□□□ -0.15
TRIM54-201ENST00000296098 PKD1P98161 4303 aa14.12□□□□□ -0.15
TRIM54-201ENST00000296098 SSBP3-AS1Q7Z2R9 100 aa14.12□□□□□ -0.15
TRIM54-201ENST00000296098 SMIM26A0A096LP01 95 aa14.11□□□□□ -0.15
TRIM54-201ENST00000296098 FAT2Q9NYQ8 4349 aa14.09□□□□□ -0.15
TRIM54-201ENST00000296098 HYDINQ4G0P3 5121 aa14.09□□□□□ -0.15
TRIM54-201ENST00000296098 TP53AIP1Q9HCN2 124 aa14.05□□□□□ -0.16
TRIM54-201ENST00000296098 C4orf26Q17RF5 130 aa14.05□□□□□ -0.16
TRIM54-201ENST00000296098 C1orf64Q8NEQ6 169 aa14.03□□□□□ -0.16
TRIM54-201ENST00000296098 SPINK6Q6UWN8 80 aa14.03□□□□□ -0.16
TRIM54-201ENST00000296098 FP248Q71RG6 208 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms