RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 Q6ZRN7 208 aaPredicted RBP12.56□□□□□ -0.4
VPS53-201ENST00000291074 LINC00336Q6ZUF6 198 aa12.55□□□□□ -0.4
VPS53-201ENST00000291074 PANO1I0J062 215 aa12.55□□□□□ -0.4
VPS53-201ENST00000291074 SNURFQ9Y675 71 aa12.55□□□□□ -0.4
VPS53-201ENST00000291074 SPRR4Q96PI1 79 aa12.55□□□□□ -0.4
VPS53-201ENST00000291074 H7BZZ5 65 aa12.54□□□□□ -0.4
VPS53-201ENST00000291074 F8WEM9 126 aa12.53□□□□□ -0.4
VPS53-201ENST00000291074 VPS13DQ5THJ4 4388 aa12.53□□□□□ -0.4
VPS53-201ENST00000291074 EPM2AB3EWF7 344 aa12.51□□□□□ -0.41
VPS53-201ENST00000291074 IGFL1Q6UW32 110 aa12.51□□□□□ -0.41
VPS53-201ENST00000291074 A0A1B0GW54 56 aa12.51□□□□□ -0.41
VPS53-201ENST00000291074 MEGF8Q7Z7M0 2845 aa12.5□□□□□ -0.41
VPS53-201ENST00000291074 UBE2AP49459 152 aa12.46□□□□□ -0.41
VPS53-201ENST00000291074 SERP1Q9Y6X1 66 aa12.45□□□□□ -0.42
VPS53-201ENST00000291074 DSCR10P59022 87 aa12.45□□□□□ -0.42
VPS53-201ENST00000291074 KLKP1Q107X0 134 aa12.44□□□□□ -0.42
VPS53-201ENST00000291074 FP248Q71RG6 208 aaPredicted RBP12.44□□□□□ -0.42
VPS53-201ENST00000291074 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.44□□□□□ -0.42
VPS53-201ENST00000291074 LINC00474Q9P2X8 69 aa12.43□□□□□ -0.42
VPS53-201ENST00000291074 IGLV8-61A0A075B6I0 122 aa12.42□□□□□ -0.42
VPS53-201ENST00000291074 OCR1Q9BZK8 76 aa12.42□□□□□ -0.42
VPS53-201ENST00000291074 K7EQZ3 153 aa12.41□□□□□ -0.42
VPS53-201ENST00000291074 DEFB116Q30KQ4 102 aa12.41□□□□□ -0.42
VPS53-201ENST00000291074 PKIGQ9Y2B9 76 aa12.41□□□□□ -0.42
VPS53-201ENST00000291074 H0Y9J4 135 aa12.41□□□□□ -0.42
VPS53-201ENST00000291074 PRO0628Q9UI54 55 aa12.41□□□□□ -0.42
VPS53-201ENST00000291074 A0A087WSZ3 146 aa12.4□□□□□ -0.42
VPS53-201ENST00000291074 KMT2AQ03164 3969 aa12.39□□□□□ -0.43
VPS53-201ENST00000291074 A0A087WTM6 91 aa12.38□□□□□ -0.43
VPS53-201ENST00000291074 DNHD1Q96M86 4753 aa12.38□□□□□ -0.43
VPS53-201ENST00000291074 SPACA4Q8TDM5 124 aa12.37□□□□□ -0.43
VPS53-201ENST00000291074 DNAH2Q9P225 4427 aa12.37□□□□□ -0.43
VPS53-201ENST00000291074 SPRR1BP22528 89 aa12.36□□□□□ -0.43
VPS53-201ENST00000291074 TMEM254Q8TBM7 123 aa12.36□□□□□ -0.43
VPS53-201ENST00000291074 TGP01266 2768 aa12.35□□□□□ -0.43
VPS53-201ENST00000291074 FAM30AQ9NZY2 134 aa12.35□□□□□ -0.43
VPS53-201ENST00000291074 HECTD4Q9Y4D8 3996 aa12.35□□□□□ -0.43
VPS53-201ENST00000291074 KRTAP13-1Q8IUC0 172 aa12.34□□□□□ -0.43
VPS53-201ENST00000291074 SMIM26A0A096LP01 95 aa12.31□□□□□ -0.44
VPS53-201ENST00000291074 FBN3Q75N90 2809 aa12.31□□□□□ -0.44
VPS53-201ENST00000291074 RTL8CO15255 209 aa12.3□□□□□ -0.44
VPS53-201ENST00000291074 A0A0U1RQV1 116 aa12.29□□□□□ -0.44
VPS53-201ENST00000291074 Q6ZR54 194 aa12.29□□□□□ -0.44
VPS53-201ENST00000291074 DNAH17Q9UFH2 4485 aa12.29□□□□□ -0.44
VPS53-201ENST00000291074 RPL37AP61513 92 aaKnown RBP12.28□□□□□ -0.44
VPS53-201ENST00000291074 FAM229BQ4G0N7 80 aa12.28□□□□□ -0.44
VPS53-201ENST00000291074 BRK1Q8WUW1 75 aa12.28□□□□□ -0.44
VPS53-201ENST00000291074 MPLKIPQ8TAP9 179 aa12.25□□□□□ -0.45
VPS53-201ENST00000291074 HCG22E2RYF7 251 aa12.25□□□□□ -0.45
VPS53-201ENST00000291074 NDUFC1O43677 76 aa12.23□□□□□ -0.45
VPS53-201ENST00000291074 WFDC13Q8IUB5 93 aa12.23□□□□□ -0.45
VPS53-201ENST00000291074 DNAH8Q96JB1 4490 aa12.22□□□□□ -0.45
VPS53-201ENST00000291074 IGLV9-49A0A0B4J1Y8 123 aa12.22□□□□□ -0.45
VPS53-201ENST00000291074 PSORS1C2Q9UIG4 136 aa12.21□□□□□ -0.46
VPS53-201ENST00000291074 FRAS1Q86XX4 4008 aa12.19□□□□□ -0.46
VPS53-201ENST00000291074 IGLV5-52A0A0A0MRZ9 124 aa12.17□□□□□ -0.46
VPS53-201ENST00000291074 C1orf134Q5TEV5 83 aa12.17□□□□□ -0.46
VPS53-201ENST00000291074 LINC00472Q9H8W2 130 aa12.17□□□□□ -0.46
VPS53-201ENST00000291074 LCE6AA0A183 80 aa12.16□□□□□ -0.46
VPS53-201ENST00000291074 LY6G6CO95867 125 aa12.16□□□□□ -0.46
VPS53-201ENST00000291074 PLAC8Q9NZF1 115 aa12.15□□□□□ -0.46
VPS53-201ENST00000291074 ANAPC11Q9NYG5 84 aa12.14□□□□□ -0.47
VPS53-201ENST00000291074 LINC00483Q53H64 154 aa12.12□□□□□ -0.47
VPS53-201ENST00000291074 PRR15Q8IV56 129 aa12.12□□□□□ -0.47
VPS53-201ENST00000291074 A8MWP4 228 aa12.1□□□□□ -0.47
VPS53-201ENST00000291074 KRTAP29-1A8MX34 341 aaPredicted RBP12.1□□□□□ -0.47
VPS53-201ENST00000291074 DNAH6Q9C0G6 4158 aa12.08□□□□□ -0.47
VPS53-201ENST00000291074 WWC2-AS2Q96NR7 200 aa12.08□□□□□ -0.48
VPS53-201ENST00000291074 C1orf195Q5TG92 126 aa12.08□□□□□ -0.48
VPS53-201ENST00000291074 ZNF861PO60384 105 aa12.07□□□□□ -0.48
VPS53-201ENST00000291074 CASC2Q6XLA1 102 aa12.07□□□□□ -0.48
VPS53-201ENST00000291074 ATP5EP56381 51 aaPredicted RBP12.07□□□□□ -0.48
VPS53-201ENST00000291074 MOBPQ13875 183 aa12.07□□□□□ -0.48
VPS53-201ENST00000291074 ZCCHC13Q8WW36 166 aaKnown RBP12.07□□□□□ -0.48
VPS53-201ENST00000291074 ZNF706Q9Y5V0 76 aaPredicted RBP12.06□□□□□ -0.48
VPS53-201ENST00000291074 Q96NJ1 140 aa12.04□□□□□ -0.48
VPS53-201ENST00000291074 DNAH5Q8TE73 4624 aa12.03□□□□□ -0.48
VPS53-201ENST00000291074 KRTAP10-2P60368 255 aa12.02□□□□□ -0.49
VPS53-201ENST00000291074 DNAH11Q96DT5 4516 aa12□□□□□ -0.49
VPS53-201ENST00000291074 MMP24-AS1A0A0U1RRL7 71 aa11.99□□□□□ -0.49
VPS53-201ENST00000291074 V9GYY9 64 aa11.99□□□□□ -0.49
VPS53-201ENST00000291074 IGLV7-43P04211 117 aa11.97□□□□□ -0.49
VPS53-201ENST00000291074 SEC61GP60059 68 aa11.96□□□□□ -0.5
VPS53-201ENST00000291074 ALMS1Q8TCU4 4167 aa11.96□□□□□ -0.5
VPS53-201ENST00000291074 NDUFB1O75438 58 aa11.95□□□□□ -0.5
VPS53-201ENST00000291074 LINC00208Q96KT6 92 aa11.95□□□□□ -0.5
VPS53-201ENST00000291074 MP68P56378 58 aa11.94□□□□□ -0.5
VPS53-201ENST00000291074 CIRBP-AS1Q8TBR5 109 aa11.94□□□□□ -0.5
VPS53-201ENST00000291074 HYDINQ4G0P3 5121 aa11.93□□□□□ -0.5
VPS53-201ENST00000291074 H0Y9P7 68 aa11.93□□□□□ -0.5
VPS53-201ENST00000291074 PRR4Q16378 134 aa11.93□□□□□ -0.5
VPS53-201ENST00000291074 hDV103S1A0JD37 113 aa11.92□□□□□ -0.5
VPS53-201ENST00000291074 PKD1P98161 4303 aa11.89□□□□□ -0.51
VPS53-201ENST00000291074 TRAV22A0A0B4J277 110 aa11.88□□□□□ -0.51
VPS53-201ENST00000291074 IGHV6-1A0A0B4J1U7 121 aa11.88□□□□□ -0.51
VPS53-201ENST00000291074 PSPHP1O15172 72 aa11.87□□□□□ -0.51
VPS53-201ENST00000291074 C1orf64Q8NEQ6 169 aa11.87□□□□□ -0.51
VPS53-201ENST00000291074 C8orf17Q9NRJ1 99 aa11.87□□□□□ -0.51
VPS53-201ENST00000291074 FAT2Q9NYQ8 4349 aa11.86□□□□□ -0.51
VPS53-201ENST00000291074 KRTAP21-3Q3LHN1 58 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms