RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 C9orf163Q8N9P6 203 aa11.71□□□□□ -0.53
PDLIM4-201ENST00000253754 PANO1I0J062 215 aa11.71□□□□□ -0.54
PDLIM4-201ENST00000253754 FUSP35637 526 aaKnown RBP eCLIP11.71□□□□□ -0.54
PDLIM4-201ENST00000253754 EPM2AB3EWF7 344 aa11.7□□□□□ -0.54
PDLIM4-201ENST00000253754 SRRM2Q9UQ35 2752 aaKnown RBP11.7□□□□□ -0.54
PDLIM4-201ENST00000253754 KMT2CQ8NEZ4 4911 aaKnown RBP11.69□□□□□ -0.54
PDLIM4-201ENST00000253754 BPY2O14599 106 aa11.69□□□□□ -0.54
PDLIM4-201ENST00000253754 DNAH2Q9P225 4427 aa11.69□□□□□ -0.54
PDLIM4-201ENST00000253754 Q8NBF4 154 aa11.69□□□□□ -0.54
PDLIM4-201ENST00000253754 LINC00476Q8WZB0 136 aa11.68□□□□□ -0.54
PDLIM4-201ENST00000253754 IGKV4-1P06312 121 aa11.67□□□□□ -0.54
PDLIM4-201ENST00000253754 PRO0628Q9UI54 55 aa11.66□□□□□ -0.54
PDLIM4-201ENST00000253754 C20orf197Q8N268 126 aa11.65□□□□□ -0.55
PDLIM4-201ENST00000253754 SPRR4Q96PI1 79 aa11.63□□□□□ -0.55
PDLIM4-201ENST00000253754 TRAV7A0A075B6U4 112 aa11.63□□□□□ -0.55
PDLIM4-201ENST00000253754 F8WEM9 126 aa11.63□□□□□ -0.55
PDLIM4-201ENST00000253754 SACSQ9NZJ4 4579 aa11.63□□□□□ -0.55
PDLIM4-201ENST00000253754 C1orf134Q5TEV5 83 aa11.62□□□□□ -0.55
PDLIM4-201ENST00000253754 IGFL1Q6UW32 110 aa11.62□□□□□ -0.55
PDLIM4-201ENST00000253754 A0A087WTM6 91 aa11.61□□□□□ -0.55
PDLIM4-201ENST00000253754 BCE1O60756 84 aa11.61□□□□□ -0.55
PDLIM4-201ENST00000253754 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.6□□□□□ -0.55
PDLIM4-201ENST00000253754 ALMS1Q8TCU4 4167 aa11.59□□□□□ -0.55
PDLIM4-201ENST00000253754 A0A1B0GW54 56 aa11.58□□□□□ -0.55
PDLIM4-201ENST00000253754 SERP1Q9Y6X1 66 aa11.58□□□□□ -0.55
PDLIM4-201ENST00000253754 UBE2AP49459 152 aa11.58□□□□□ -0.56
PDLIM4-201ENST00000253754 FAM236DA0A1B0GTK5 79 aa11.57□□□□□ -0.56
PDLIM4-201ENST00000253754 FAM236CP0DP71 79 aa11.57□□□□□ -0.56
PDLIM4-201ENST00000253754 DNAH6Q9C0G6 4158 aa11.57□□□□□ -0.56
PDLIM4-201ENST00000253754 FRAS1Q86XX4 4008 aa11.57□□□□□ -0.56
PDLIM4-201ENST00000253754 LINC00474Q9P2X8 69 aa11.57□□□□□ -0.56
PDLIM4-201ENST00000253754 HECTD4Q9Y4D8 3996 aa11.56□□□□□ -0.56
PDLIM4-201ENST00000253754 LINC00336Q6ZUF6 198 aa11.56□□□□□ -0.56
PDLIM4-201ENST00000253754 SPACA4Q8TDM5 124 aa11.55□□□□□ -0.56
PDLIM4-201ENST00000253754 SNURFQ9Y675 71 aa11.55□□□□□ -0.56
PDLIM4-201ENST00000253754 H0Y9J4 135 aa11.54□□□□□ -0.56
PDLIM4-201ENST00000253754 IGLV8-61A0A075B6I0 122 aa11.53□□□□□ -0.56
PDLIM4-201ENST00000253754 DSCR10P59022 87 aa11.53□□□□□ -0.56
PDLIM4-201ENST00000253754 PKIGQ9Y2B9 76 aa11.53□□□□□ -0.56
PDLIM4-201ENST00000253754 DEFB116Q30KQ4 102 aa11.52□□□□□ -0.57
PDLIM4-201ENST00000253754 DNAH17Q9UFH2 4485 aa11.51□□□□□ -0.57
PDLIM4-201ENST00000253754 A0A087WSZ3 146 aa11.51□□□□□ -0.57
PDLIM4-201ENST00000253754 H7BZZ5 65 aa11.51□□□□□ -0.57
PDLIM4-201ENST00000253754 K7EQZ3 153 aa11.51□□□□□ -0.57
PDLIM4-201ENST00000253754 KRTAP13-1Q8IUC0 172 aa11.49□□□□□ -0.57
PDLIM4-201ENST00000253754 RTL8CO15255 209 aa11.48□□□□□ -0.57
PDLIM4-201ENST00000253754 SPRR1BP22528 89 aa11.48□□□□□ -0.57
PDLIM4-201ENST00000253754 KLKP1Q107X0 134 aa11.47□□□□□ -0.57
PDLIM4-201ENST00000253754 OCR1Q9BZK8 76 aa11.47□□□□□ -0.57
PDLIM4-201ENST00000253754 RYR2Q92736 4967 aa11.47□□□□□ -0.57
PDLIM4-201ENST00000253754 SMIM26A0A096LP01 95 aa11.46□□□□□ -0.58
PDLIM4-201ENST00000253754 RYR3Q15413 4870 aa11.45□□□□□ -0.58
PDLIM4-201ENST00000253754 IGLV5-52A0A0A0MRZ9 124 aa11.44□□□□□ -0.58
PDLIM4-201ENST00000253754 FP248Q71RG6 208 aaPredicted RBP11.44□□□□□ -0.58
PDLIM4-201ENST00000253754 FAM30AQ9NZY2 134 aa11.43□□□□□ -0.58
PDLIM4-201ENST00000253754 TMEM254Q8TBM7 123 aa11.42□□□□□ -0.58
PDLIM4-201ENST00000253754 FAT2Q9NYQ8 4349 aa11.41□□□□□ -0.58
PDLIM4-201ENST00000253754 DNAH8Q96JB1 4490 aa11.4□□□□□ -0.58
PDLIM4-201ENST00000253754 RPL37AP61513 92 aaKnown RBP11.39□□□□□ -0.59
PDLIM4-201ENST00000253754 LCE6AA0A183 80 aa11.39□□□□□ -0.59
PDLIM4-201ENST00000253754 PSORS1C2Q9UIG4 136 aa11.38□□□□□ -0.59
PDLIM4-201ENST00000253754 KRTAP10-2P60368 255 aa11.37□□□□□ -0.59
PDLIM4-201ENST00000253754 IGLV9-49A0A0B4J1Y8 123 aa11.36□□□□□ -0.59
PDLIM4-201ENST00000253754 DNAH11Q96DT5 4516 aa11.36□□□□□ -0.59
PDLIM4-201ENST00000253754 ATP5EP56381 51 aaPredicted RBP11.35□□□□□ -0.59
PDLIM4-201ENST00000253754 HCG22E2RYF7 251 aa11.34□□□□□ -0.59
PDLIM4-201ENST00000253754 PKHD1P08F94 4074 aa11.34□□□□□ -0.59
PDLIM4-201ENST00000253754 PLAC8Q9NZF1 115 aa11.34□□□□□ -0.59
PDLIM4-201ENST00000253754 A0A0U1RQV1 116 aa11.33□□□□□ -0.6
PDLIM4-201ENST00000253754 NDUFC1O43677 76 aa11.33□□□□□ -0.6
PDLIM4-201ENST00000253754 DNAH5Q8TE73 4624 aa11.32□□□□□ -0.6
PDLIM4-201ENST00000253754 WFDC13Q8IUB5 93 aa11.32□□□□□ -0.6
PDLIM4-201ENST00000253754 ANAPC11Q9NYG5 84 aa11.32□□□□□ -0.6
PDLIM4-201ENST00000253754 PKD1P98161 4303 aa11.31□□□□□ -0.6
PDLIM4-201ENST00000253754 LINC00472Q9H8W2 130 aa11.3□□□□□ -0.6
PDLIM4-201ENST00000253754 LINC00483Q53H64 154 aa11.28□□□□□ -0.6
PDLIM4-201ENST00000253754 V9GYY9 64 aa11.28□□□□□ -0.6
PDLIM4-201ENST00000253754 SEC61GP60059 68 aa11.28□□□□□ -0.6
PDLIM4-201ENST00000253754 C1orf195Q5TG92 126 aa11.27□□□□□ -0.61
PDLIM4-201ENST00000253754 ZNF861PO60384 105 aa11.24□□□□□ -0.61
PDLIM4-201ENST00000253754 PRR15Q8IV56 129 aa11.23□□□□□ -0.61
PDLIM4-201ENST00000253754 BRK1Q8WUW1 75 aa11.23□□□□□ -0.61
PDLIM4-201ENST00000253754 A8MWP4 228 aa11.23□□□□□ -0.61
PDLIM4-201ENST00000253754 MOBPQ13875 183 aa11.23□□□□□ -0.61
PDLIM4-201ENST00000253754 ZNF706Q9Y5V0 76 aaPredicted RBP11.22□□□□□ -0.61
PDLIM4-201ENST00000253754 KRTAP29-1A8MX34 341 aaPredicted RBP11.21□□□□□ -0.62
PDLIM4-201ENST00000253754 KRTAP10-1P60331 282 aa11.2□□□□□ -0.62
PDLIM4-201ENST00000253754 Q96NJ1 140 aa11.19□□□□□ -0.62
PDLIM4-201ENST00000253754 CASC2Q6XLA1 102 aa11.18□□□□□ -0.62
PDLIM4-201ENST00000253754 CIRBP-AS1Q8TBR5 109 aa11.18□□□□□ -0.62
PDLIM4-201ENST00000253754 IGLV7-43P04211 117 aa11.16□□□□□ -0.62
PDLIM4-201ENST00000253754 ZCCHC13Q8WW36 166 aaKnown RBP11.15□□□□□ -0.62
PDLIM4-201ENST00000253754 Q6ZSA8 131 aa11.14□□□□□ -0.63
PDLIM4-201ENST00000253754 FAM229BQ4G0N7 80 aa11.12□□□□□ -0.63
PDLIM4-201ENST00000253754 MMP24-AS1A0A0U1RRL7 71 aa11.12□□□□□ -0.63
PDLIM4-201ENST00000253754 LRP1BQ9NZR2 4599 aa11.08□□□□□ -0.64
PDLIM4-201ENST00000253754 NDUFB1O75438 58 aa11.08□□□□□ -0.64
PDLIM4-201ENST00000253754 EPPK1P58107 5090 aaKnown RBP11.07□□□□□ -0.64
PDLIM4-201ENST00000253754 DYNC1H1Q14204 4646 aaKnown RBP11.05□□□□□ -0.64
PDLIM4-201ENST00000253754 MPLKIPQ8TAP9 179 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms