RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 HIGD2AQ9BW72 106 aa10.08□□□□□ -0.8
UBE3D-201ENST00000237186 EPM2AB3EWF7 344 aa10.08□□□□□ -0.8
UBE3D-201ENST00000237186 KLKP1Q107X0 134 aa10.07□□□□□ -0.8
UBE3D-201ENST00000237186 RPS28P62857 69 aaKnown RBP10.06□□□□□ -0.8
UBE3D-201ENST00000237186 IGFL1Q6UW32 110 aa10.06□□□□□ -0.8
UBE3D-201ENST00000237186 LCE2DQ5TA82 110 aaPredicted RBP10.05□□□□□ -0.8
UBE3D-201ENST00000237186 PANO1I0J062 215 aa10.03□□□□□ -0.8
UBE3D-201ENST00000237186 DNAH2Q9P225 4427 aa10.03□□□□□ -0.8
UBE3D-201ENST00000237186 DSCR10P59022 87 aa10.02□□□□□ -0.8
UBE3D-201ENST00000237186 A0A087WTM6 91 aa10.02□□□□□ -0.81
UBE3D-201ENST00000237186 UBE2AP49459 152 aa10.02□□□□□ -0.81
UBE3D-201ENST00000237186 KRTAP13-1Q8IUC0 172 aa10.02□□□□□ -0.81
UBE3D-201ENST00000237186 OCR1Q9BZK8 76 aa10.02□□□□□ -0.81
UBE3D-201ENST00000237186 FBN3Q75N90 2809 aa10.01□□□□□ -0.81
UBE3D-201ENST00000237186 SPACA4Q8TDM5 124 aa10.01□□□□□ -0.81
UBE3D-201ENST00000237186 DNAH17Q9UFH2 4485 aa10.01□□□□□ -0.81
UBE3D-201ENST00000237186 H7BZZ5 65 aa10□□□□□ -0.81
UBE3D-201ENST00000237186 DPH3Q96FX2 82 aa10□□□□□ -0.81
UBE3D-201ENST00000237186 J3KT08 172 aa10□□□□□ -0.81
UBE3D-201ENST00000237186 Q6ZR54 194 aa9.99□□□□□ -0.81
UBE3D-201ENST00000237186 HECTD4Q9Y4D8 3996 aa9.98□□□□□ -0.81
UBE3D-201ENST00000237186 A0A0G2JQZ4 141 aa9.97□□□□□ -0.81
UBE3D-201ENST00000237186 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.97□□□□□ -0.81
UBE3D-201ENST00000237186 NDUFC1O43677 76 aa9.96□□□□□ -0.82
UBE3D-201ENST00000237186 SNURFQ9Y675 71 aa9.95□□□□□ -0.82
UBE3D-201ENST00000237186 A0A087WSZ3 146 aa9.94□□□□□ -0.82
UBE3D-201ENST00000237186 K7EQZ3 153 aa9.94□□□□□ -0.82
UBE3D-201ENST00000237186 KMT2AQ03164 3969 aa9.94□□□□□ -0.82
UBE3D-201ENST00000237186 TMEM254Q8TBM7 123 aa9.93□□□□□ -0.82
UBE3D-201ENST00000237186 FAM236DA0A1B0GTK5 79 aa9.91□□□□□ -0.82
UBE3D-201ENST00000237186 FAM236CP0DP71 79 aa9.91□□□□□ -0.82
UBE3D-201ENST00000237186 RTL8CO15255 209 aa9.91□□□□□ -0.82
UBE3D-201ENST00000237186 LCE6AA0A183 80 aa9.89□□□□□ -0.83
UBE3D-201ENST00000237186 DNAH6Q9C0G6 4158 aa9.89□□□□□ -0.83
UBE3D-201ENST00000237186 A0A0U1RQV1 116 aa9.89□□□□□ -0.83
UBE3D-201ENST00000237186 PLAC8Q9NZF1 115 aa9.89□□□□□ -0.83
UBE3D-201ENST00000237186 HCG22E2RYF7 251 aa9.87□□□□□ -0.83
UBE3D-201ENST00000237186 WWC2-AS2Q96NR7 200 aa9.87□□□□□ -0.83
UBE3D-201ENST00000237186 SRRM2Q9UQ35 2752 aaKnown RBP9.87□□□□□ -0.83
UBE3D-201ENST00000237186 DNAH8Q96JB1 4490 aa9.87□□□□□ -0.83
UBE3D-201ENST00000237186 LINC00483Q53H64 154 aa9.87□□□□□ -0.83
UBE3D-201ENST00000237186 TGP01266 2768 aa9.86□□□□□ -0.83
UBE3D-201ENST00000237186 LINC00472Q9H8W2 130 aa9.85□□□□□ -0.83
UBE3D-201ENST00000237186 IGLV5-52A0A0A0MRZ9 124 aa9.85□□□□□ -0.83
UBE3D-201ENST00000237186 OXTP01178 125 aa9.85□□□□□ -0.83
UBE3D-201ENST00000237186 C1orf134Q5TEV5 83 aa9.85□□□□□ -0.83
UBE3D-201ENST00000237186 RPL37AP61513 92 aaKnown RBP9.84□□□□□ -0.83
UBE3D-201ENST00000237186 DEFB116Q30KQ4 102 aa9.84□□□□□ -0.83
UBE3D-201ENST00000237186 FAM30AQ9NZY2 134 aa9.84□□□□□ -0.83
UBE3D-201ENST00000237186 LY6G6CO95867 125 aa9.83□□□□□ -0.84
UBE3D-201ENST00000237186 ATP5EP56381 51 aaPredicted RBP9.83□□□□□ -0.84
UBE3D-201ENST00000237186 PSORS1C2Q9UIG4 136 aa9.83□□□□□ -0.84
UBE3D-201ENST00000237186 ZNF706Q9Y5V0 76 aaPredicted RBP9.82□□□□□ -0.84
UBE3D-201ENST00000237186 SERP1Q9Y6X1 66 aa9.82□□□□□ -0.84
UBE3D-201ENST00000237186 PRR15Q8IV56 129 aa9.81□□□□□ -0.84
UBE3D-201ENST00000237186 A8MWP4 228 aa9.79□□□□□ -0.84
UBE3D-201ENST00000237186 KRTAP29-1A8MX34 341 aaPredicted RBP9.79□□□□□ -0.84
UBE3D-201ENST00000237186 ZNF861PO60384 105 aa9.79□□□□□ -0.84
UBE3D-201ENST00000237186 C5orf47Q569G3 176 aa9.79□□□□□ -0.84
UBE3D-201ENST00000237186 ZCCHC13Q8WW36 166 aaKnown RBP9.77□□□□□ -0.85
UBE3D-201ENST00000237186 DNAH11Q96DT5 4516 aa9.77□□□□□ -0.85
UBE3D-201ENST00000237186 DNAH5Q8TE73 4624 aa9.75□□□□□ -0.85
UBE3D-201ENST00000237186 FRAS1Q86XX4 4008 aa9.75□□□□□ -0.85
UBE3D-201ENST00000237186 ALMS1Q8TCU4 4167 aa9.75□□□□□ -0.85
UBE3D-201ENST00000237186 IGLV9-49A0A0B4J1Y8 123 aa9.74□□□□□ -0.85
UBE3D-201ENST00000237186 WFDC13Q8IUB5 93 aa9.73□□□□□ -0.85
UBE3D-201ENST00000237186 Q96NJ1 140 aa9.72□□□□□ -0.85
UBE3D-201ENST00000237186 CASC2Q6XLA1 102 aa9.71□□□□□ -0.85
UBE3D-201ENST00000237186 IGLV7-43P04211 117 aa9.68□□□□□ -0.86
UBE3D-201ENST00000237186 NDUFB1O75438 58 aa9.68□□□□□ -0.86
UBE3D-201ENST00000237186 MOBPQ13875 183 aa9.68□□□□□ -0.86
UBE3D-201ENST00000237186 Q5XG85 94 aa9.67□□□□□ -0.86
UBE3D-201ENST00000237186 SVIPQ8NHG7 77 aa9.66□□□□□ -0.86
UBE3D-201ENST00000237186 MMP24-AS1A0A0U1RRL7 71 aa9.66□□□□□ -0.86
UBE3D-201ENST00000237186 MP68P56378 58 aa9.65□□□□□ -0.86
UBE3D-201ENST00000237186 ASB16-AS1Q495Z4 193 aa9.65□□□□□ -0.86
UBE3D-201ENST00000237186 FAT2Q9NYQ8 4349 aa9.65□□□□□ -0.87
UBE3D-201ENST00000237186 SMIM26A0A096LP01 95 aa9.64□□□□□ -0.87
UBE3D-201ENST00000237186 ANAPC11Q9NYG5 84 aa9.64□□□□□ -0.87
UBE3D-201ENST00000237186 H3BPC8 53 aa9.64□□□□□ -0.87
UBE3D-201ENST00000237186 KRTAP10-2P60368 255 aa9.63□□□□□ -0.87
UBE3D-201ENST00000237186 HYDINQ4G0P3 5121 aa9.62□□□□□ -0.87
UBE3D-201ENST00000237186 CIRBP-AS1Q8TBR5 109 aa9.62□□□□□ -0.87
UBE3D-201ENST00000237186 HRCT1Q6UXD1 115 aa9.61□□□□□ -0.87
UBE3D-201ENST00000237186 hDV103S1A0JD37 113 aa9.6□□□□□ -0.87
UBE3D-201ENST00000237186 Q6ZSA8 131 aa9.59□□□□□ -0.87
UBE3D-201ENST00000237186 PKD1P98161 4303 aa9.59□□□□□ -0.87
UBE3D-201ENST00000237186 TRAV22A0A0B4J277 110 aa9.59□□□□□ -0.87
UBE3D-201ENST00000237186 H0Y9P7 68 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 CD164Q04900 197 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 C4orf26Q17RF5 130 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 LRP1BQ9NZR2 4599 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 A0A1B0GVX0 72 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 FP248Q71RG6 208 aaPredicted RBP9.57□□□□□ -0.88
UBE3D-201ENST00000237186 SSBP3-AS1Q7Z2R9 100 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 LINC00208Q96KT6 92 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 C8orf17Q9NRJ1 99 aa9.57□□□□□ -0.88
UBE3D-201ENST00000237186 CYP4F30PQ9H0H9 118 aa9.56□□□□□ -0.88
UBE3D-201ENST00000237186 TP53AIP1Q9HCN2 124 aa9.55□□□□□ -0.88
UBE3D-201ENST00000237186 CDK2AP2O75956 126 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms