RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 FLNBO75369 2602 aaKnown RBP9.85□□□□□ -0.83
CLN3-253ENST00000636977 FAM229BQ4G0N7 80 aa9.85□□□□□ -0.83
CLN3-253ENST00000636977 MUC7Q8TAX7 377 aa9.85□□□□□ -0.83
CLN3-253ENST00000636977 UBL5Q9BZL1 73 aa9.85□□□□□ -0.83
CLN3-253ENST00000636977 MAST4O15021 2626 aa9.84□□□□□ -0.83
CLN3-253ENST00000636977 NOTCH1P46531 2555 aa9.84□□□□□ -0.83
CLN3-253ENST00000636977 TRAV7A0A075B6U4 112 aa9.83□□□□□ -0.84
CLN3-253ENST00000636977 COX7BP24311 80 aa9.82□□□□□ -0.84
CLN3-253ENST00000636977 LOC110117498A0A087WWA1 95 aa9.81□□□□□ -0.84
CLN3-253ENST00000636977 Q6ZRP5 223 aa9.81□□□□□ -0.84
CLN3-253ENST00000636977 CMYA5Q8N3K9 4069 aa9.81□□□□□ -0.84
CLN3-253ENST00000636977 IGKV2D-24A0A075B6R9 120 aa9.81□□□□□ -0.84
CLN3-253ENST00000636977 ELOF1P60002 83 aaKnown RBP9.8□□□□□ -0.84
CLN3-253ENST00000636977 EGFEM1PQ0D2K5 195 aa9.8□□□□□ -0.84
CLN3-253ENST00000636977 SCXQ7RTU7 201 aa9.8□□□□□ -0.84
CLN3-253ENST00000636977 H3BNG1 76 aa9.79□□□□□ -0.84
CLN3-253ENST00000636977 KLKP1Q107X0 134 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 Q6ZVQ6 151 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 LRCOL1A6NCL2 159 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 ATP5EP2Q5VTU8 51 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 TM2D3Q9BRN9 247 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 DEFB131BA0A096LNP1 70 aa9.78□□□□□ -0.84
CLN3-253ENST00000636977 LINC01547P58512 204 aaPredicted RBP9.78□□□□□ -0.84
CLN3-253ENST00000636977 M0R378 163 aa9.77□□□□□ -0.85
CLN3-253ENST00000636977 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.76□□□□□ -0.85
CLN3-253ENST00000636977 KRTAP24-1Q3LI83 254 aa9.75□□□□□ -0.85
CLN3-253ENST00000636977 PRB2P02812 416 aaPredicted RBP9.75□□□□□ -0.85
CLN3-253ENST00000636977 SERTAD4-AS1Q5TG53 156 aa9.75□□□□□ -0.85
CLN3-253ENST00000636977 LINC00528Q8N1L1 170 aa9.75□□□□□ -0.85
CLN3-253ENST00000636977 PMAIP1Q13794 54 aa9.74□□□□□ -0.85
CLN3-253ENST00000636977 C11orf45Q8TAV5 145 aa9.74□□□□□ -0.85
CLN3-253ENST00000636977 TRBV7-4A0A0J9YYF1 115 aa9.74□□□□□ -0.85
CLN3-253ENST00000636977 LINC01556Q5JQF7 62 aa9.74□□□□□ -0.85
CLN3-253ENST00000636977 CASC10Q5T4H9 136 aa9.73□□□□□ -0.85
CLN3-253ENST00000636977 SYCNQ0VAF6 134 aa9.73□□□□□ -0.85
CLN3-253ENST00000636977 FAM168BA1KXE4 195 aa9.7□□□□□ -0.86
CLN3-253ENST00000636977 NBEAL1Q6ZS30 2694 aa9.69□□□□□ -0.86
CLN3-253ENST00000636977 DEFB105AQ8NG35 78 aa9.69□□□□□ -0.86
CLN3-253ENST00000636977 C7orf33Q8WU49 177 aa9.69□□□□□ -0.86
CLN3-253ENST00000636977 RPL37AP8A6NKH3 93 aa9.68□□□□□ -0.86
CLN3-253ENST00000636977 PDE6GP18545 87 aa9.68□□□□□ -0.86
CLN3-253ENST00000636977 DNAH3Q8TD57 4116 aa9.67□□□□□ -0.86
CLN3-253ENST00000636977 BAHCC1Q9P281 2608 aa9.67□□□□□ -0.86
CLN3-253ENST00000636977 NKAPP1Q8N9T2 125 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 TMEM254Q8TBM7 123 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 H3BQ85 93 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 DNAH10OSP0CZ25 163 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 Q8N9L7 120 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 LINC00588Q9Y4M8 146 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 NREPQ16612 68 aa9.66□□□□□ -0.86
CLN3-253ENST00000636977 COL6A5A8TX70 2615 aa9.65□□□□□ -0.86
CLN3-253ENST00000636977 KCNQ1DNQ9H478 68 aa9.64□□□□□ -0.87
CLN3-253ENST00000636977 PSPHP1O15172 72 aa9.64□□□□□ -0.87
CLN3-253ENST00000636977 NDUFC1O43677 76 aa9.64□□□□□ -0.87
CLN3-253ENST00000636977 KRTAP7-1Q8IUC3 87 aa9.64□□□□□ -0.87
CLN3-253ENST00000636977 CXCL6P80162 114 aa9.63□□□□□ -0.87
CLN3-253ENST00000636977 FUSP35637 526 aaKnown RBP eCLIP9.63□□□□□ -0.87
CLN3-253ENST00000636977 Q8N377 158 aa9.63□□□□□ -0.87
CLN3-253ENST00000636977 C3orf84H3BNL1 204 aa9.62□□□□□ -0.87
CLN3-253ENST00000636977 DNAH1Q9P2D7 4330 aa9.62□□□□□ -0.87
CLN3-253ENST00000636977 ATP5EP56381 51 aaPredicted RBP9.61□□□□□ -0.87
CLN3-253ENST00000636977 Q9BRP9 147 aa9.61□□□□□ -0.87
CLN3-253ENST00000636977 LYSTQ99698 3801 aa9.61□□□□□ -0.87
CLN3-253ENST00000636977 ST20-AS1Q8NBB2 130 aa9.6□□□□□ -0.87
CLN3-253ENST00000636977 BPY2O14599 106 aa9.59□□□□□ -0.87
CLN3-253ENST00000636977 HUWE1Q7Z6Z7 4374 aaKnown RBP9.59□□□□□ -0.87
CLN3-253ENST00000636977 HIGD2AQ9BW72 106 aa9.58□□□□□ -0.88
CLN3-253ENST00000636977 PRYO14603 147 aa9.58□□□□□ -0.88
CLN3-253ENST00000636977 KRTAP4-16G5E9R7 235 aaPredicted RBP9.57□□□□□ -0.88
CLN3-253ENST00000636977 BCE1O60756 84 aa9.57□□□□□ -0.88
CLN3-253ENST00000636977 IGLV1-50A0A075B6I6 118 aa9.57□□□□□ -0.88
CLN3-253ENST00000636977 TLX1NBP0CAT3 122 aa9.57□□□□□ -0.88
CLN3-253ENST00000636977 Q6ZRX8 168 aa9.57□□□□□ -0.88
CLN3-253ENST00000636977 DNAH10Q8IVF4 4471 aa9.56□□□□□ -0.88
CLN3-253ENST00000636977 ERC2-IT1O76042 136 aa9.56□□□□□ -0.88
CLN3-253ENST00000636977 PRR15Q8IV56 129 aa9.56□□□□□ -0.88
CLN3-253ENST00000636977 PRR4Q16378 134 aa9.55□□□□□ -0.88
CLN3-253ENST00000636977 A8MU10 97 aa9.54□□□□□ -0.88
CLN3-253ENST00000636977 IGKV4-1P06312 121 aa9.54□□□□□ -0.88
CLN3-253ENST00000636977 MGAM2Q2M2H8 2515 aa9.53□□□□□ -0.88
CLN3-253ENST00000636977 ETDCA0A1B0GVM5 59 aa9.53□□□□□ -0.88
CLN3-253ENST00000636977 PLA2G2DQ9UNK4 145 aa9.53□□□□□ -0.88
CLN3-253ENST00000636977 IGLV5-48A0A075B6I7 105 aa9.52□□□□□ -0.88
CLN3-253ENST00000636977 A0A1W2PNM2 257 aa9.52□□□□□ -0.88
CLN3-253ENST00000636977 K7EIL1 84 aa9.52□□□□□ -0.89
CLN3-253ENST00000636977 COL7A1Q02388 2944 aa9.52□□□□□ -0.89
CLN3-253ENST00000636977 SPRR1AP35321 89 aa9.51□□□□□ -0.89
CLN3-253ENST00000636977 STAB2Q8WWQ8 2551 aa9.51□□□□□ -0.89
CLN3-253ENST00000636977 A0A0G2JQZ4 141 aa9.51□□□□□ -0.89
CLN3-253ENST00000636977 A0A1W2PNN7 141 aa9.51□□□□□ -0.89
CLN3-253ENST00000636977 MRPL55Q7Z7F7 128 aaKnown RBP9.51□□□□□ -0.89
CLN3-253ENST00000636977 DHRS4-AS1Q9P1J3 65 aa9.51□□□□□ -0.89
CLN3-253ENST00000636977 CSMD3Q7Z407 3707 aa9.5□□□□□ -0.89
CLN3-253ENST00000636977 IGLV5-37A0A075B6J1 123 aa9.5□□□□□ -0.89
CLN3-253ENST00000636977 CD164Q04900 197 aa9.5□□□□□ -0.89
CLN3-253ENST00000636977 KRTAP1-5Q9BYS1 174 aa9.5□□□□□ -0.89
CLN3-253ENST00000636977 UBE2BP63146 152 aa9.48□□□□□ -0.89
CLN3-253ENST00000636977 TNP2Q05952 138 aa9.48□□□□□ -0.89
CLN3-253ENST00000636977 C1orf137Q5JT78 98 aa9.48□□□□□ -0.89
CLN3-253ENST00000636977 TENM2Q9NT68 2774 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms