RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 FAM19A5Q7Z5A7 132 aaPredicted RBP10.18□□□□□ -0.78
CLN3-251ENST00000636853 LOC107984640A0A0U1RRK4 108 aa10.17□□□□□ -0.78
CLN3-251ENST00000636853 JMJD7-PLA2G4BH0Y9G9 81 aa10.17□□□□□ -0.78
CLN3-251ENST00000636853 TLX1NBP0CAT3 122 aa10.17□□□□□ -0.78
CLN3-251ENST00000636853 TMEM256-PLSCR3K7ERE1 68 aa10.16□□□□□ -0.78
CLN3-251ENST00000636853 IGKV3D-7A0A0C4DH55 119 aa10.16□□□□□ -0.78
CLN3-251ENST00000636853 DNAH7Q8WXX0 4024 aa10.15□□□□□ -0.78
CLN3-251ENST00000636853 DPH3Q96FX2 82 aa10.14□□□□□ -0.79
CLN3-251ENST00000636853 PRKDCP78527 4128 aaKnown RBP10.14□□□□□ -0.79
CLN3-251ENST00000636853 COX7BP24311 80 aa10.14□□□□□ -0.79
CLN3-251ENST00000636853 NKAPP1Q8N9T2 125 aa10.14□□□□□ -0.79
CLN3-251ENST00000636853 FAM168BA1KXE4 195 aa10.13□□□□□ -0.79
CLN3-251ENST00000636853 ELOF1P60002 83 aaKnown RBP10.13□□□□□ -0.79
CLN3-251ENST00000636853 Q6ZQY7 126 aa10.13□□□□□ -0.79
CLN3-251ENST00000636853 PLECQ15149 4684 aaKnown RBP10.12□□□□□ -0.79
CLN3-251ENST00000636853 C7orf33Q8WU49 177 aa10.12□□□□□ -0.79
CLN3-251ENST00000636853 PSCAO43653 123 aa10.11□□□□□ -0.79
CLN3-251ENST00000636853 BCE1O60756 84 aa10.11□□□□□ -0.79
CLN3-251ENST00000636853 CYSTM1Q9H1C7 97 aa10.11□□□□□ -0.79
CLN3-251ENST00000636853 TENM2Q9NT68 2774 aa10.1□□□□□ -0.79
CLN3-251ENST00000636853 A0A087WVE0 104 aa10.09□□□□□ -0.79
CLN3-251ENST00000636853 TRBV7-6A0A0J9YX20 115 aa10.09□□□□□ -0.79
CLN3-251ENST00000636853 NUPR2A6NF83 97 aa10.09□□□□□ -0.79
CLN3-251ENST00000636853 PLA2G2DQ9UNK4 145 aa10.09□□□□□ -0.79
CLN3-251ENST00000636853 KRTAP7-1Q8IUC3 87 aa10.08□□□□□ -0.8
CLN3-251ENST00000636853 DNHD1Q96M86 4753 aa10.08□□□□□ -0.8
CLN3-251ENST00000636853 RPL37AP8A6NKH3 93 aa10.08□□□□□ -0.8
CLN3-251ENST00000636853 LINC00528Q8N1L1 170 aa10.07□□□□□ -0.8
CLN3-251ENST00000636853 KCNQ1DNQ9H478 68 aa10.07□□□□□ -0.8
CLN3-251ENST00000636853 LAMTOR3Q9UHA4 124 aa10.07□□□□□ -0.8
CLN3-251ENST00000636853 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.05□□□□□ -0.8
CLN3-251ENST00000636853 IGLV5-37A0A075B6J1 123 aa10.04□□□□□ -0.8
CLN3-251ENST00000636853 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.04□□□□□ -0.8
CLN3-251ENST00000636853 STARD9Q9P2P6 4700 aa10.04□□□□□ -0.8
CLN3-251ENST00000636853 NBDYA0A0U1RRE5 68 aa10.03□□□□□ -0.8
CLN3-251ENST00000636853 GHRHP01286 108 aa10.03□□□□□ -0.8
CLN3-251ENST00000636853 UBL5Q9BZL1 73 aa10.03□□□□□ -0.8
CLN3-251ENST00000636853 IGLV1-50A0A075B6I6 118 aa10.03□□□□□ -0.8
CLN3-251ENST00000636853 RBM3P98179 157 aaKnown RBP10.03□□□□□ -0.8
CLN3-251ENST00000636853 CNBPP62633 177 aaKnown RBP10.02□□□□□ -0.81
CLN3-251ENST00000636853 H3BQ85 93 aa10.02□□□□□ -0.81
CLN3-251ENST00000636853 MEGF8Q7Z7M0 2845 aa10.01□□□□□ -0.81
CLN3-251ENST00000636853 LOC110117498A0A087WWA1 95 aa10.01□□□□□ -0.81
CLN3-251ENST00000636853 A0A096LNI7 61 aa10.01□□□□□ -0.81
CLN3-251ENST00000636853 IGKV2-24A0A0C4DH68 120 aa10.01□□□□□ -0.81
CLN3-251ENST00000636853 MRPL55Q7Z7F7 128 aaKnown RBP10.01□□□□□ -0.81
CLN3-251ENST00000636853 DSCR8Q96T75 97 aa10□□□□□ -0.81
CLN3-251ENST00000636853 OXTP01178 125 aa9.99□□□□□ -0.81
CLN3-251ENST00000636853 M0R2N4 97 aa9.99□□□□□ -0.81
CLN3-251ENST00000636853 PRYO14603 147 aa9.99□□□□□ -0.81
CLN3-251ENST00000636853 Q6ZQT0 140 aa9.99□□□□□ -0.81
CLN3-251ENST00000636853 C16orf90A8MZG2 172 aa9.98□□□□□ -0.81
CLN3-251ENST00000636853 EPM2AB3EWF7 344 aa9.98□□□□□ -0.81
CLN3-251ENST00000636853 KRTAP4-16G5E9R7 235 aaPredicted RBP9.98□□□□□ -0.81
CLN3-251ENST00000636853 C14orf177Q52M58 125 aa9.98□□□□□ -0.81
CLN3-251ENST00000636853 VPS13DQ5THJ4 4388 aa9.97□□□□□ -0.81
CLN3-251ENST00000636853 TRAV7A0A075B6U4 112 aa9.97□□□□□ -0.81
CLN3-251ENST00000636853 LRCOL1A6NCL2 159 aa9.97□□□□□ -0.81
CLN3-251ENST00000636853 PDE6GP18545 87 aa9.97□□□□□ -0.81
CLN3-251ENST00000636853 A0A1W2PNN7 141 aa9.96□□□□□ -0.81
CLN3-251ENST00000636853 SPRR1AP35321 89 aa9.96□□□□□ -0.81
CLN3-251ENST00000636853 Q5XG85 94 aa9.96□□□□□ -0.81
CLN3-251ENST00000636853 Q6ZRX8 168 aa9.96□□□□□ -0.81
CLN3-251ENST00000636853 FAM19A1Q7Z5A9 133 aa9.96□□□□□ -0.81
CLN3-251ENST00000636853 ETDCA0A1B0GVM5 59 aa9.96□□□□□ -0.82
CLN3-251ENST00000636853 Q6ZRN7 208 aaPredicted RBP9.96□□□□□ -0.82
CLN3-251ENST00000636853 DEFB105AQ8NG35 78 aa9.95□□□□□ -0.82
CLN3-251ENST00000636853 Q9BRP9 147 aa9.95□□□□□ -0.82
CLN3-251ENST00000636853 CHTF8P0CG12 524 aa9.94□□□□□ -0.82
CLN3-251ENST00000636853 FAM236DA0A1B0GTK5 79 aa9.94□□□□□ -0.82
CLN3-251ENST00000636853 FAM236CP0DP71 79 aa9.94□□□□□ -0.82
CLN3-251ENST00000636853 CXCL6P80162 114 aa9.93□□□□□ -0.82
CLN3-251ENST00000636853 KLKP1Q107X0 134 aa9.93□□□□□ -0.82
CLN3-251ENST00000636853 DHRS4-AS1Q9P1J3 65 aa9.92□□□□□ -0.82
CLN3-251ENST00000636853 SERP1Q9Y6X1 66 aa9.92□□□□□ -0.82
CLN3-251ENST00000636853 REG3GQ6UW15 175 aa9.91□□□□□ -0.82
CLN3-251ENST00000636853 C20orf197Q8N268 126 aa9.91□□□□□ -0.82
CLN3-251ENST00000636853 Q8N377 158 aa9.91□□□□□ -0.82
CLN3-251ENST00000636853 TRBV7-4A0A0J9YYF1 115 aa9.91□□□□□ -0.82
CLN3-251ENST00000636853 C9orf163Q8N9P6 203 aa9.91□□□□□ -0.82
CLN3-251ENST00000636853 H7BZZ5 65 aa9.9□□□□□ -0.83
CLN3-251ENST00000636853 LINC01547P58512 204 aaPredicted RBP9.9□□□□□ -0.83
CLN3-251ENST00000636853 ST20-AS1Q8NBB2 130 aa9.89□□□□□ -0.83
CLN3-251ENST00000636853 ERC2-IT1O76042 136 aa9.89□□□□□ -0.83
CLN3-251ENST00000636853 UBE2BP63146 152 aa9.89□□□□□ -0.83
CLN3-251ENST00000636853 C4orf26Q17RF5 130 aa9.89□□□□□ -0.83
CLN3-251ENST00000636853 KMT2AQ03164 3969 aa9.89□□□□□ -0.83
CLN3-251ENST00000636853 Q6ZVQ6 151 aa9.88□□□□□ -0.83
CLN3-251ENST00000636853 NDUFC1O43677 76 aa9.86□□□□□ -0.83
CLN3-251ENST00000636853 PHF5AQ7RTV0 110 aaKnown RBP9.86□□□□□ -0.83
CLN3-251ENST00000636853 KRTAP11-1Q8IUC1 163 aa9.85□□□□□ -0.83
CLN3-251ENST00000636853 PANO1I0J062 215 aa9.84□□□□□ -0.83
CLN3-251ENST00000636853 FUSP35637 526 aaKnown RBP eCLIP9.84□□□□□ -0.83
CLN3-251ENST00000636853 HRCT1Q6UXD1 115 aa9.84□□□□□ -0.83
CLN3-251ENST00000636853 ATP5EP56381 51 aaPredicted RBP9.84□□□□□ -0.83
CLN3-251ENST00000636853 PRLHP81277 87 aa9.84□□□□□ -0.83
CLN3-251ENST00000636853 A0A087WTM6 91 aa9.82□□□□□ -0.84
CLN3-251ENST00000636853 IGLV5-48A0A075B6I7 105 aa9.82□□□□□ -0.84
CLN3-251ENST00000636853 Q6ZR54 194 aa9.82□□□□□ -0.84
CLN3-251ENST00000636853 HAMPP81172 84 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms