RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 C7orf33Q8WU49 177 aa12.69□□□□□ -0.38
CHRNA4-209ENST00000627000 ELOF1P60002 83 aaKnown RBP12.68□□□□□ -0.38
CHRNA4-209ENST00000627000 TMEM256-PLSCR3K7ERE1 68 aa12.67□□□□□ -0.38
CHRNA4-209ENST00000627000 KRTAP7-1Q8IUC3 87 aa12.67□□□□□ -0.38
CHRNA4-209ENST00000627000 Q6ZQY7 126 aa12.66□□□□□ -0.38
CHRNA4-209ENST00000627000 ATOX1O00244 68 aa12.66□□□□□ -0.38
CHRNA4-209ENST00000627000 PLA2G2DQ9UNK4 145 aa12.66□□□□□ -0.38
CHRNA4-209ENST00000627000 LOC107984640A0A0U1RRK4 108 aa12.64□□□□□ -0.39
CHRNA4-209ENST00000627000 TRBV7-6A0A0J9YX20 115 aa12.64□□□□□ -0.39
CHRNA4-209ENST00000627000 NBDYA0A0U1RRE5 68 aa12.63□□□□□ -0.39
CHRNA4-209ENST00000627000 RPL37AP8A6NKH3 93 aa12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 COX7CP15954 63 aa12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 LINC00528Q8N1L1 170 aa12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 KCNQ1DNQ9H478 68 aa12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 FAM19A5Q7Z5A7 132 aaPredicted RBP12.62□□□□□ -0.39
CHRNA4-209ENST00000627000 IGLV5-37A0A075B6J1 123 aa12.61□□□□□ -0.39
CHRNA4-209ENST00000627000 Q6JHZ5 121 aa12.6□□□□□ -0.39
CHRNA4-209ENST00000627000 JMJD7-PLA2G4BH0Y9G9 81 aa12.6□□□□□ -0.39
CHRNA4-209ENST00000627000 CNBPP62633 177 aaKnown RBP12.6□□□□□ -0.39
CHRNA4-209ENST00000627000 HIST1H4AP62805 103 aaKnown RBP12.59□□□□□ -0.39
CHRNA4-209ENST00000627000 A0A096LNI7 61 aa12.58□□□□□ -0.4
CHRNA4-209ENST00000627000 VPS13DQ5THJ4 4388 aa12.58□□□□□ -0.4
CHRNA4-209ENST00000627000 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.57□□□□□ -0.4
CHRNA4-209ENST00000627000 IGLV1-50A0A075B6I6 118 aa12.57□□□□□ -0.4
CHRNA4-209ENST00000627000 IGKV2-24A0A0C4DH68 120 aa12.56□□□□□ -0.4
CHRNA4-209ENST00000627000 M0R2N4 97 aa12.56□□□□□ -0.4
CHRNA4-209ENST00000627000 LAMTOR3Q9UHA4 124 aa12.56□□□□□ -0.4
CHRNA4-209ENST00000627000 LRCOL1A6NCL2 159 aa12.56□□□□□ -0.4
CHRNA4-209ENST00000627000 CRYGAP11844 174 aa12.56□□□□□ -0.4
CHRNA4-209ENST00000627000 Q6ZRN7 208 aaPredicted RBP12.55□□□□□ -0.4
CHRNA4-209ENST00000627000 MRPL55Q7Z7F7 128 aaKnown RBP12.55□□□□□ -0.4
CHRNA4-209ENST00000627000 CCKP06307 115 aa12.54□□□□□ -0.4
CHRNA4-209ENST00000627000 C14orf177Q52M58 125 aa12.53□□□□□ -0.4
CHRNA4-209ENST00000627000 C16orf90A8MZG2 172 aa12.53□□□□□ -0.4
CHRNA4-209ENST00000627000 LINC00846Q9NV44 126 aa12.53□□□□□ -0.4
CHRNA4-209ENST00000627000 KRTAP4-16G5E9R7 235 aaPredicted RBP12.52□□□□□ -0.41
CHRNA4-209ENST00000627000 PRYO14603 147 aa12.52□□□□□ -0.41
CHRNA4-209ENST00000627000 RBM3P98179 157 aaKnown RBP12.52□□□□□ -0.41
CHRNA4-209ENST00000627000 A0A1W2PNN7 141 aa12.51□□□□□ -0.41
CHRNA4-209ENST00000627000 J3KT08 172 aa12.51□□□□□ -0.41
CHRNA4-209ENST00000627000 SPRR1AP35321 89 aa12.5□□□□□ -0.41
CHRNA4-209ENST00000627000 H3BQ85 93 aa12.49□□□□□ -0.41
CHRNA4-209ENST00000627000 CHTF8P0CG12 524 aa12.49□□□□□ -0.41
CHRNA4-209ENST00000627000 ATP5EP2Q5VTU8 51 aa12.48□□□□□ -0.41
CHRNA4-209ENST00000627000 Q6ZRX8 168 aa12.48□□□□□ -0.41
CHRNA4-209ENST00000627000 SERP2Q8N6R1 65 aa12.47□□□□□ -0.41
CHRNA4-209ENST00000627000 Q9BRP9 147 aa12.47□□□□□ -0.41
CHRNA4-209ENST00000627000 ETDCA0A1B0GVM5 59 aa12.47□□□□□ -0.41
CHRNA4-209ENST00000627000 Q6ZQT0 140 aa12.47□□□□□ -0.41
CHRNA4-209ENST00000627000 IGKV3D-7A0A0C4DH55 119 aa12.46□□□□□ -0.42
CHRNA4-209ENST00000627000 RPS28P62857 69 aaKnown RBP12.46□□□□□ -0.42
CHRNA4-209ENST00000627000 C9orf163Q8N9P6 203 aa12.46□□□□□ -0.42
CHRNA4-209ENST00000627000 LOC110117498A0A087WWA1 95 aa12.45□□□□□ -0.42
CHRNA4-209ENST00000627000 GHRHP01286 108 aa12.44□□□□□ -0.42
CHRNA4-209ENST00000627000 DEFB105AQ8NG35 78 aa12.44□□□□□ -0.42
CHRNA4-209ENST00000627000 TMEM258P61165 79 aa12.43□□□□□ -0.42
CHRNA4-209ENST00000627000 DSCR8Q96T75 97 aa12.43□□□□□ -0.42
CHRNA4-209ENST00000627000 REG3GQ6UW15 175 aa12.43□□□□□ -0.42
CHRNA4-209ENST00000627000 KMT2AQ03164 3969 aa12.42□□□□□ -0.42
CHRNA4-209ENST00000627000 FBN3Q75N90 2809 aa12.42□□□□□ -0.42
CHRNA4-209ENST00000627000 DHRS4-AS1Q9P1J3 65 aa12.42□□□□□ -0.42
CHRNA4-209ENST00000627000 Q8N377 158 aa12.41□□□□□ -0.42
CHRNA4-209ENST00000627000 LINC01547P58512 204 aaPredicted RBP12.4□□□□□ -0.42
CHRNA4-209ENST00000627000 ERC2-IT1O76042 136 aa12.4□□□□□ -0.42
CHRNA4-209ENST00000627000 ST20-AS1Q8NBB2 130 aa12.4□□□□□ -0.42
CHRNA4-209ENST00000627000 TRBV7-4A0A0J9YYF1 115 aa12.39□□□□□ -0.43
CHRNA4-209ENST00000627000 KRTAP21-3Q3LHN1 58 aa12.39□□□□□ -0.43
CHRNA4-209ENST00000627000 Q6ZR54 194 aa12.39□□□□□ -0.43
CHRNA4-209ENST00000627000 PHF5AQ7RTV0 110 aaKnown RBP12.39□□□□□ -0.43
CHRNA4-209ENST00000627000 PANO1I0J062 215 aa12.38□□□□□ -0.43
CHRNA4-209ENST00000627000 FUSP35637 526 aaKnown RBP eCLIP12.38□□□□□ -0.43
CHRNA4-209ENST00000627000 UBE2BP63146 152 aa12.37□□□□□ -0.43
CHRNA4-209ENST00000627000 KRTAP11-1Q8IUC1 163 aa12.37□□□□□ -0.43
CHRNA4-209ENST00000627000 DNAH2Q9P225 4427 aa12.37□□□□□ -0.43
CHRNA4-209ENST00000627000 A0A087WTM6 91 aa12.37□□□□□ -0.43
CHRNA4-209ENST00000627000 UBL5Q9BZL1 73 aa12.35□□□□□ -0.43
CHRNA4-209ENST00000627000 PDE6GP18545 87 aa12.35□□□□□ -0.43
CHRNA4-209ENST00000627000 A0A087WVE0 104 aa12.34□□□□□ -0.43
CHRNA4-209ENST00000627000 PRLHP81277 87 aa12.33□□□□□ -0.44
CHRNA4-209ENST00000627000 FAM19A1Q7Z5A9 133 aa12.33□□□□□ -0.44
CHRNA4-209ENST00000627000 LY6G6CO95867 125 aa12.31□□□□□ -0.44
CHRNA4-209ENST00000627000 TGP01266 2768 aa12.31□□□□□ -0.44
CHRNA4-209ENST00000627000 IGLV5-48A0A075B6I7 105 aa12.3□□□□□ -0.44
CHRNA4-209ENST00000627000 PKIGQ9Y2B9 76 aa12.3□□□□□ -0.44
CHRNA4-209ENST00000627000 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.29□□□□□ -0.44
CHRNA4-209ENST00000627000 BCE1O60756 84 aa12.29□□□□□ -0.44
CHRNA4-209ENST00000627000 C5orf47Q569G3 176 aa12.29□□□□□ -0.44
CHRNA4-209ENST00000627000 DPH3Q96FX2 82 aa12.28□□□□□ -0.44
CHRNA4-209ENST00000627000 LINC00474Q9P2X8 69 aa12.28□□□□□ -0.44
CHRNA4-209ENST00000627000 DNAH17Q9UFH2 4485 aa12.27□□□□□ -0.45
CHRNA4-209ENST00000627000 C1orf134Q5TEV5 83 aa12.26□□□□□ -0.45
CHRNA4-209ENST00000627000 Q6ZVQ6 151 aa12.26□□□□□ -0.45
CHRNA4-209ENST00000627000 SPACA4Q8TDM5 124 aa12.26□□□□□ -0.45
CHRNA4-209ENST00000627000 HIGD2AQ9BW72 106 aa12.26□□□□□ -0.45
CHRNA4-209ENST00000627000 HECTD4Q9Y4D8 3996 aa12.25□□□□□ -0.45
CHRNA4-209ENST00000627000 RTL8CO15255 209 aa12.25□□□□□ -0.45
CHRNA4-209ENST00000627000 TNP2Q05952 138 aa12.24□□□□□ -0.45
CHRNA4-209ENST00000627000 WWC2-AS2Q96NR7 200 aa12.23□□□□□ -0.45
CHRNA4-209ENST00000627000 CYSTM1Q9H1C7 97 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms