RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 GVQW2A0A096LPI5 108 aaPredicted RBP3.38□□□□□ -1.87
VPS13D-213ENST00000613099 MOBPQ13875 183 aa3.38□□□□□ -1.87
VPS13D-213ENST00000613099 DMAC1Q96GE9 116 aa3.38□□□□□ -1.87
VPS13D-213ENST00000613099 CRIPTQ9P021 101 aa3.38□□□□□ -1.87
VPS13D-213ENST00000613099 DEFB4AO15263 64 aa3.38□□□□□ -1.87
VPS13D-213ENST00000613099 IGLV4-60A0A075B6I1 120 aa3.37□□□□□ -1.87
VPS13D-213ENST00000613099 IGLV1-40P01703 118 aa3.37□□□□□ -1.87
VPS13D-213ENST00000613099 KCNQ1DNQ9H478 68 aa3.36□□□□□ -1.87
VPS13D-213ENST00000613099 IGLV7-46A0A075B6I9 117 aa3.36□□□□□ -1.87
VPS13D-213ENST00000613099 TEX15Q9BXT5 2789 aa3.36□□□□□ -1.87
VPS13D-213ENST00000613099 DEFB131BA0A096LNP1 70 aa3.36□□□□□ -1.87
VPS13D-213ENST00000613099 PRAC1Q96KF2 57 aa3.36□□□□□ -1.87
VPS13D-213ENST00000613099 CR1P17927 2039 aa3.35□□□□□ -1.87
VPS13D-213ENST00000613099 A0A096LNI7 61 aa3.35□□□□□ -1.87
VPS13D-213ENST00000613099 KRTAP21-3Q3LHN1 58 aa3.35□□□□□ -1.87
VPS13D-213ENST00000613099 Q6ZRX8 168 aa3.35□□□□□ -1.87
VPS13D-213ENST00000613099 A6NN06 94 aa3.34□□□□□ -1.87
VPS13D-213ENST00000613099 UBR5O95071 2799 aaPredicted RBP3.34□□□□□ -1.87
VPS13D-213ENST00000613099 K7EQZ3 153 aa3.34□□□□□ -1.88
VPS13D-213ENST00000613099 ITPR2Q14571 2701 aa3.34□□□□□ -1.88
VPS13D-213ENST00000613099 C9orf129Q5T035 196 aaKnown RBP3.34□□□□□ -1.88
VPS13D-213ENST00000613099 FLNCQ14315 2725 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 SPINK1P00995 79 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 CSAG1Q6PB30 78 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 A0A0A0MQY5 61 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 M0R2N4 97 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 LINC00476Q8WZB0 136 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 LMO4P61968 165 aa3.33□□□□□ -1.88
VPS13D-213ENST00000613099 ST20-AS1Q8NBB2 130 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 LUZP6Q538Z0 58 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 PRLHP81277 87 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 PRR26Q8N8Z3 221 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 IGLV1-51P01701 117 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 PLA2G2AP14555 144 aa3.32□□□□□ -1.88
VPS13D-213ENST00000613099 SEC61BP60468 96 aaKnown RBP3.32□□□□□ -1.88
VPS13D-213ENST00000613099 IGKV2-24A0A0C4DH68 120 aa3.31□□□□□ -1.88
VPS13D-213ENST00000613099 BPTFQ12830 3046 aa3.31□□□□□ -1.88
VPS13D-213ENST00000613099 FAM229AH3BQW9 127 aa3.31□□□□□ -1.88
VPS13D-213ENST00000613099 IGLV8-61A0A075B6I0 122 aa3.31□□□□□ -1.88
VPS13D-213ENST00000613099 PLA2G1BP04054 148 aaKnown RBP3.3□□□□□ -1.88
VPS13D-213ENST00000613099 C22orf24Q9Y442 160 aa3.3□□□□□ -1.88
VPS13D-213ENST00000613099 Q8NAQ8 132 aa3.3□□□□□ -1.88
VPS13D-213ENST00000613099 LINC00528Q8N1L1 170 aa3.3□□□□□ -1.88
VPS13D-213ENST00000613099 PLA2G2DQ9UNK4 145 aa3.3□□□□□ -1.88
VPS13D-213ENST00000613099 SPINK6Q6UWN8 80 aa3.3□□□□□ -1.88
VPS13D-213ENST00000613099 DEFB135Q30KP9 77 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 ODF3L2Q3SX64 289 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 NOTCH2NLQ7Z3S9 236 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 BAHCC1Q9P281 2608 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 LINC01556Q5JQF7 62 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 IGLV9-49A0A0B4J1Y8 123 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 LY6G6CO95867 125 aa3.29□□□□□ -1.88
VPS13D-213ENST00000613099 DSPP15924 2871 aaKnown RBP3.28□□□□□ -1.88
VPS13D-213ENST00000613099 ZNF575Q86XF7 245 aa3.28□□□□□ -1.88
VPS13D-213ENST00000613099 IGKV2D-30A0A075B6S6 120 aa3.28□□□□□ -1.88
VPS13D-213ENST00000613099 IGKV2-30P06310 120 aa3.28□□□□□ -1.88
VPS13D-213ENST00000613099 IGLV5-48A0A075B6I7 105 aa3.28□□□□□ -1.88
VPS13D-213ENST00000613099 CHTF8P0CG12 524 aa3.28□□□□□ -1.88
VPS13D-213ENST00000613099 FAM104AQ969W3 186 aa3.27□□□□□ -1.89
VPS13D-213ENST00000613099 SPINK7P58062 85 aa3.27□□□□□ -1.89
VPS13D-213ENST00000613099 RPS29P62273 56 aaKnown RBP3.27□□□□□ -1.89
VPS13D-213ENST00000613099 GOLGB1Q14789 3259 aaKnown RBP3.27□□□□□ -1.89
VPS13D-213ENST00000613099 Q8N377 158 aa3.27□□□□□ -1.89
VPS13D-213ENST00000613099 ITPR1Q14643 2758 aa3.27□□□□□ -1.89
VPS13D-213ENST00000613099 C18orf65Q6ZTR6 163 aa3.26□□□□□ -1.89
VPS13D-213ENST00000613099 TLX1NBP0CAT3 122 aa3.26□□□□□ -1.89
VPS13D-213ENST00000613099 MRPL34Q9BQ48 92 aaKnown RBP3.26□□□□□ -1.89
VPS13D-213ENST00000613099 C8orf17Q9NRJ1 99 aa3.26□□□□□ -1.89
VPS13D-213ENST00000613099 A0A1W2PNU3 283 aaPredicted RBP3.25□□□□□ -1.89
VPS13D-213ENST00000613099 CENPFP49454 3210 aa3.25□□□□□ -1.89
VPS13D-213ENST00000613099 C10orf99Q6UWK7 81 aa3.25□□□□□ -1.89
VPS13D-213ENST00000613099 SPRR4Q96PI1 79 aa3.25□□□□□ -1.89
VPS13D-213ENST00000613099 DSCR10P59022 87 aa3.25□□□□□ -1.89
VPS13D-213ENST00000613099 ZCCHC13Q8WW36 166 aaKnown RBP3.24□□□□□ -1.89
VPS13D-213ENST00000613099 A0A1W2PNM2 257 aa3.24□□□□□ -1.89
VPS13D-213ENST00000613099 A0A1B0GVX0 72 aa3.24□□□□□ -1.89
VPS13D-213ENST00000613099 SPATA8Q6RVD6 105 aa3.24□□□□□ -1.89
VPS13D-213ENST00000613099 X6R8D5 127 aa3.24□□□□□ -1.89
VPS13D-213ENST00000613099 IGFL1Q6UW32 110 aa3.23□□□□□ -1.89
VPS13D-213ENST00000613099 IGSF10Q6WRI0 2623 aa3.23□□□□□ -1.89
VPS13D-213ENST00000613099 C9orf163Q8N9P6 203 aa3.23□□□□□ -1.89
VPS13D-213ENST00000613099 CHD9Q3L8U1 2897 aa3.23□□□□□ -1.89
VPS13D-213ENST00000613099 TNRC18O15417 2968 aaPredicted RBP3.23□□□□□ -1.89
VPS13D-213ENST00000613099 DNAH10OSP0CZ25 163 aa3.23□□□□□ -1.89
VPS13D-213ENST00000613099 UTRNP46939 3433 aa3.22□□□□□ -1.89
VPS13D-213ENST00000613099 A0A096LNT2 108 aa3.22□□□□□ -1.89
VPS13D-213ENST00000613099 CIRBP-AS1Q8TBR5 109 aa3.22□□□□□ -1.89
VPS13D-213ENST00000613099 C15orf56Q8N910 161 aa3.22□□□□□ -1.89
VPS13D-213ENST00000613099 A0A1B0GU33 70 aa3.21□□□□□ -1.9
VPS13D-213ENST00000613099 CEP350Q5VT06 3117 aa3.21□□□□□ -1.9
VPS13D-213ENST00000613099 HRES1P13985 223 aa3.21□□□□□ -1.9
VPS13D-213ENST00000613099 LCE6AA0A183 80 aa3.21□□□□□ -1.9
VPS13D-213ENST00000613099 CNBPP62633 177 aaKnown RBP3.21□□□□□ -1.9
VPS13D-213ENST00000613099 ROMO1P60602 79 aa3.21□□□□□ -1.9
VPS13D-213ENST00000613099 SPACA4Q8TDM5 124 aa3.2□□□□□ -1.9
VPS13D-213ENST00000613099 IGLV1-50A0A075B6I6 118 aa3.2□□□□□ -1.9
VPS13D-213ENST00000613099 IGLV7-43P04211 117 aa3.2□□□□□ -1.9
VPS13D-213ENST00000613099 PRR34Q9NV39 138 aa3.19□□□□□ -1.9
VPS13D-213ENST00000613099 COX6B2Q6YFQ2 88 aa3.19□□□□□ -1.9
VPS13D-213ENST00000613099 IGLV5-37A0A075B6J1 123 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms