RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ELOF1P60002 83 aaKnown RBP12.17□□□□□ -0.46
UPF1-210ENST00000600689 HIGD2AQ9BW72 106 aa12.15□□□□□ -0.46
UPF1-210ENST00000600689 PRB2P02812 416 aaPredicted RBP12.15□□□□□ -0.46
UPF1-210ENST00000600689 VPREB1P12018 145 aa12.14□□□□□ -0.47
UPF1-210ENST00000600689 FAM30AQ9NZY2 134 aa12.14□□□□□ -0.47
UPF1-210ENST00000600689 FBN1P35555 2871 aaKnown RBP12.14□□□□□ -0.47
UPF1-210ENST00000600689 MRAPQ8TCY5 172 aa12.13□□□□□ -0.47
UPF1-210ENST00000600689 SPART-AS1P0CW21 52 aa12.12□□□□□ -0.47
UPF1-210ENST00000600689 IGKV4-1P06312 121 aa12.11□□□□□ -0.47
UPF1-210ENST00000600689 BCE1O60756 84 aa12.11□□□□□ -0.47
UPF1-210ENST00000600689 APOC4P55056 127 aa12.11□□□□□ -0.47
UPF1-210ENST00000600689 PRR34Q9NV39 138 aa12.11□□□□□ -0.47
UPF1-210ENST00000600689 EPM2AB3EWF7 344 aa12.1□□□□□ -0.47
UPF1-210ENST00000600689 Q8NAQ8 132 aa12.1□□□□□ -0.47
UPF1-210ENST00000600689 PRO0628Q9UI54 55 aa12.1□□□□□ -0.47
UPF1-210ENST00000600689 STAB1Q9NY15 2570 aa12.1□□□□□ -0.47
UPF1-210ENST00000600689 RPL37AP8A6NKH3 93 aa12.09□□□□□ -0.47
UPF1-210ENST00000600689 M0R378 163 aa12.09□□□□□ -0.47
UPF1-210ENST00000600689 LINC00528Q8N1L1 170 aa12.08□□□□□ -0.48
UPF1-210ENST00000600689 RETNQ9HD89 108 aa12.08□□□□□ -0.48
UPF1-210ENST00000600689 Q6ZRP5 223 aa12.08□□□□□ -0.48
UPF1-210ENST00000600689 IGKV2D-24A0A075B6R9 120 aa12.07□□□□□ -0.48
UPF1-210ENST00000600689 PRYO14603 147 aa12.07□□□□□ -0.48
UPF1-210ENST00000600689 OXLD1Q5BKU9 147 aa12.07□□□□□ -0.48
UPF1-210ENST00000600689 PRR4Q16378 134 aa12.07□□□□□ -0.48
UPF1-210ENST00000600689 FUSP35637 526 aaKnown RBP eCLIP12.07□□□□□ -0.48
UPF1-210ENST00000600689 SMIM29Q86T20 159 aa12.06□□□□□ -0.48
UPF1-210ENST00000600689 CMYA5Q8N3K9 4069 aa12.06□□□□□ -0.48
UPF1-210ENST00000600689 NDUFC1O43677 76 aa12.05□□□□□ -0.48
UPF1-210ENST00000600689 BAHCC1Q9P281 2608 aa12.05□□□□□ -0.48
UPF1-210ENST00000600689 GVQW2A0A096LPI5 108 aaPredicted RBP12.05□□□□□ -0.48
UPF1-210ENST00000600689 NKAPP1Q8N9T2 125 aa12.04□□□□□ -0.48
UPF1-210ENST00000600689 A0A0G2JQZ4 141 aa12.02□□□□□ -0.48
UPF1-210ENST00000600689 A0A1W2PNN7 141 aa12.02□□□□□ -0.48
UPF1-210ENST00000600689 SERTAD4-AS1Q5TG53 156 aa12.02□□□□□ -0.48
UPF1-210ENST00000600689 OCR1Q9BZK8 76 aa12.02□□□□□ -0.48
UPF1-210ENST00000600689 H3BQ85 93 aa12.02□□□□□ -0.49
UPF1-210ENST00000600689 C15orf56Q8N910 161 aa12.02□□□□□ -0.49
UPF1-210ENST00000600689 EGFEM1PQ0D2K5 195 aa12.02□□□□□ -0.49
UPF1-210ENST00000600689 KPRPQ5T749 579 aaPredicted RBP12.02□□□□□ -0.49
UPF1-210ENST00000600689 ST20-AS1Q8NBB2 130 aa12.01□□□□□ -0.49
UPF1-210ENST00000600689 Q8N377 158 aa12.01□□□□□ -0.49
UPF1-210ENST00000600689 TENM3Q9P273 2699 aa12□□□□□ -0.49
UPF1-210ENST00000600689 MAST4O15021 2626 aa12□□□□□ -0.49
UPF1-210ENST00000600689 KRTAP10-11P60412 298 aa12□□□□□ -0.49
UPF1-210ENST00000600689 FAM168BA1KXE4 195 aa11.99□□□□□ -0.49
UPF1-210ENST00000600689 DEFB116Q30KQ4 102 aa11.98□□□□□ -0.49
UPF1-210ENST00000600689 C7orf33Q8WU49 177 aa11.98□□□□□ -0.49
UPF1-210ENST00000600689 Q6ZTC4 211 aa11.97□□□□□ -0.49
UPF1-210ENST00000600689 SYCNQ0VAF6 134 aa11.95□□□□□ -0.5
UPF1-210ENST00000600689 KRTAP24-1Q3LI83 254 aa11.95□□□□□ -0.5
UPF1-210ENST00000600689 NOTCH1P46531 2555 aa11.95□□□□□ -0.5
UPF1-210ENST00000600689 ESRGQ1W209 222 aa11.95□□□□□ -0.5
UPF1-210ENST00000600689 A0A1W2PNM2 257 aa11.94□□□□□ -0.5
UPF1-210ENST00000600689 ATP5EP56381 51 aaPredicted RBP11.93□□□□□ -0.5
UPF1-210ENST00000600689 C1orf137Q5JT78 98 aa11.93□□□□□ -0.5
UPF1-210ENST00000600689 KRTAP26-1Q6PEX3 210 aa11.92□□□□□ -0.5
UPF1-210ENST00000600689 ETDCA0A1B0GVM5 59 aa11.9□□□□□ -0.5
UPF1-210ENST00000600689 K7EQZ3 153 aa11.89□□□□□ -0.51
UPF1-210ENST00000600689 UBE2BP63146 152 aa11.89□□□□□ -0.51
UPF1-210ENST00000600689 Q9BRP9 147 aa11.89□□□□□ -0.51
UPF1-210ENST00000600689 ERC2-IT1O76042 136 aa11.88□□□□□ -0.51
UPF1-210ENST00000600689 COL6A5A8TX70 2615 aa11.88□□□□□ -0.51
UPF1-210ENST00000600689 PSPHP1O15172 72 aa11.88□□□□□ -0.51
UPF1-210ENST00000600689 CASC10Q5T4H9 136 aa11.86□□□□□ -0.51
UPF1-210ENST00000600689 WFDC13Q8IUB5 93 aa11.86□□□□□ -0.51
UPF1-210ENST00000600689 KCNQ1DNQ9H478 68 aa11.85□□□□□ -0.51
UPF1-210ENST00000600689 DNAH3Q8TD57 4116 aa11.85□□□□□ -0.51
UPF1-210ENST00000600689 C1orf195Q5TG92 126 aa11.84□□□□□ -0.51
UPF1-210ENST00000600689 C1orf64Q8NEQ6 169 aa11.83□□□□□ -0.52
UPF1-210ENST00000600689 NBEAL1Q6ZS30 2694 aa11.83□□□□□ -0.52
UPF1-210ENST00000600689 Q6ZRX8 168 aa11.83□□□□□ -0.52
UPF1-210ENST00000600689 IGLV5-48A0A075B6I7 105 aa11.82□□□□□ -0.52
UPF1-210ENST00000600689 DSCR10P59022 87 aa11.82□□□□□ -0.52
UPF1-210ENST00000600689 Q8NBF4 154 aa11.8□□□□□ -0.52
UPF1-210ENST00000600689 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.79□□□□□ -0.52
UPF1-210ENST00000600689 DHRS4-AS1Q9P1J3 65 aa11.78□□□□□ -0.52
UPF1-210ENST00000600689 DEFB131BA0A096LNP1 70 aa11.78□□□□□ -0.52
UPF1-210ENST00000600689 hDV103S1A0JD37 113 aa11.78□□□□□ -0.52
UPF1-210ENST00000600689 RPL37AP61513 92 aaKnown RBP11.77□□□□□ -0.53
UPF1-210ENST00000600689 IGLV1-50A0A075B6I6 118 aa11.74□□□□□ -0.53
UPF1-210ENST00000600689 PSCAO43653 123 aa11.74□□□□□ -0.53
UPF1-210ENST00000600689 PRLHP81277 87 aa11.74□□□□□ -0.53
UPF1-210ENST00000600689 IGKV2-24A0A0C4DH68 120 aa11.73□□□□□ -0.53
UPF1-210ENST00000600689 KRTAP7-1Q8IUC3 87 aa11.73□□□□□ -0.53
UPF1-210ENST00000600689 LINC00476Q8WZB0 136 aa11.73□□□□□ -0.53
UPF1-210ENST00000600689 SRRM2Q9UQ35 2752 aaKnown RBP11.73□□□□□ -0.53
UPF1-210ENST00000600689 A0A087WSZ3 146 aa11.72□□□□□ -0.53
UPF1-210ENST00000600689 HCG22E2RYF7 251 aa11.71□□□□□ -0.53
UPF1-210ENST00000600689 C11orf45Q8TAV5 145 aa11.71□□□□□ -0.53
UPF1-210ENST00000600689 A0A096LNI7 61 aa11.71□□□□□ -0.54
UPF1-210ENST00000600689 TNP2Q05952 138 aa11.71□□□□□ -0.54
UPF1-210ENST00000600689 LINC01556Q5JQF7 62 aa11.71□□□□□ -0.54
UPF1-210ENST00000600689 MRPL55Q7Z7F7 128 aaKnown RBP11.7□□□□□ -0.54
UPF1-210ENST00000600689 LINC00208Q96KT6 92 aa11.7□□□□□ -0.54
UPF1-210ENST00000600689 LYSTQ99698 3801 aa11.69□□□□□ -0.54
UPF1-210ENST00000600689 KRTAP4-16G5E9R7 235 aaPredicted RBP11.69□□□□□ -0.54
UPF1-210ENST00000600689 H3BNG1 76 aa11.69□□□□□ -0.54
UPF1-210ENST00000600689 V9GYY9 64 aa11.69□□□□□ -0.54
UPF1-210ENST00000600689 A8MU10 97 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms