RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 LINC01547P58512 204 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-223ENST00000600552 JOSD1Q15040 202 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-223ENST00000600552 ST20-AS1Q8NBB2 130 aa9.82□□□□□ -0.84
SHKBP1-223ENST00000600552 KRTAP4-1Q9BYQ7 146 aa9.82□□□□□ -0.84
SHKBP1-223ENST00000600552 SOSTDC1Q6X4U4 206 aa9.81□□□□□ -0.84
SHKBP1-223ENST00000600552 ZNF73O43830 326 aaPredicted RBP9.8□□□□□ -0.84
SHKBP1-223ENST00000600552 EIF4EBP3O60516 100 aaPredicted RBP9.8□□□□□ -0.84
SHKBP1-223ENST00000600552 NDUFC2O95298 119 aa9.8□□□□□ -0.84
SHKBP1-223ENST00000600552 ADAMTSL4-AS1Q5T5F5 129 aa9.8□□□□□ -0.84
SHKBP1-223ENST00000600552 A0A0J9YXY3 114 aa9.79□□□□□ -0.84
SHKBP1-223ENST00000600552 OR13C6PQ8NH95 151 aa9.79□□□□□ -0.84
SHKBP1-223ENST00000600552 HRCT1Q6UXD1 115 aa9.78□□□□□ -0.84
SHKBP1-223ENST00000600552 KRTAP9-6A0A140TA67 174 aa9.77□□□□□ -0.85
SHKBP1-223ENST00000600552 HINT1P49773 126 aaPredicted RBP9.77□□□□□ -0.85
SHKBP1-223ENST00000600552 RPS29P62273 56 aaKnown RBP9.77□□□□□ -0.85
SHKBP1-223ENST00000600552 XP32Q5T750 250 aa9.73□□□□□ -0.85
SHKBP1-223ENST00000600552 E9PLD3 99 aa9.72□□□□□ -0.85
SHKBP1-223ENST00000600552 LINC00308Q8TCZ7 52 aa9.7□□□□□ -0.86
SHKBP1-223ENST00000600552 CBY1Q9Y3M2 126 aa9.7□□□□□ -0.86
SHKBP1-223ENST00000600552 COLCA2A8K830 154 aa9.69□□□□□ -0.86
SHKBP1-223ENST00000600552 SLC7A5P1Q8MH63 180 aa9.69□□□□□ -0.86
SHKBP1-223ENST00000600552 DEFB105AQ8NG35 78 aa9.69□□□□□ -0.86
SHKBP1-223ENST00000600552 SPANXCQ9NY87 97 aa9.69□□□□□ -0.86
SHKBP1-223ENST00000600552 C9orf92A6NGG3 77 aa9.68□□□□□ -0.86
SHKBP1-223ENST00000600552 SYS1-DBNDD2H3BUS1 97 aa9.67□□□□□ -0.86
SHKBP1-223ENST00000600552 DHRS4-AS1Q9P1J3 65 aa9.67□□□□□ -0.86
SHKBP1-223ENST00000600552 LAMTOR3Q9UHA4 124 aa9.67□□□□□ -0.86
SHKBP1-223ENST00000600552 ZNF815PA8K554 130 aa9.66□□□□□ -0.86
SHKBP1-223ENST00000600552 TAL2Q16559 108 aa9.66□□□□□ -0.86
SHKBP1-223ENST00000600552 SLC25A34Q6PIV7 304 aa9.66□□□□□ -0.86
SHKBP1-223ENST00000600552 LITAFQ99732 161 aa9.66□□□□□ -0.86
SHKBP1-223ENST00000600552 TTTY13Q9BZ97 58 aa9.66□□□□□ -0.86
SHKBP1-223ENST00000600552 C5orf52A6NGY3 159 aa9.65□□□□□ -0.86
SHKBP1-223ENST00000600552 COX7BP24311 80 aa9.65□□□□□ -0.86
SHKBP1-223ENST00000600552 Q1RN00 199 aa9.65□□□□□ -0.86
SHKBP1-223ENST00000600552 LIMD2Q9BT23 127 aa9.65□□□□□ -0.86
SHKBP1-223ENST00000600552 PCOTHQ58A44 107 aa9.64□□□□□ -0.87
SHKBP1-223ENST00000600552 H7C2G1 150 aa9.63□□□□□ -0.87
SHKBP1-223ENST00000600552 SPRR1BP22528 89 aa9.63□□□□□ -0.87
SHKBP1-223ENST00000600552 C6orf99Q4VX62 202 aa9.63□□□□□ -0.87
SHKBP1-223ENST00000600552 SPANXDQ9BXN6 97 aa9.63□□□□□ -0.87
SHKBP1-223ENST00000600552 TIMM17BO60830 172 aa9.62□□□□□ -0.87
SHKBP1-223ENST00000600552 IGLV8-61A0A075B6I0 122 aa9.61□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BKO60814 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BJP06899 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BOP23527 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BBP33778 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BDP58876 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 ELOF1P60002 83 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BCP62807 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST2H2BEQ16778 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 LINC01545Q5VT33 79 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 PET117Q6UWS5 81 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 LINC00518Q8N0U6 118 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BHQ93079 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BNQ99877 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 HIST1H2BMQ99879 126 aa9.59□□□□□ -0.87
SHKBP1-223ENST00000600552 SCGB1D4Q6XE38 83 aa9.57□□□□□ -0.88
SHKBP1-223ENST00000600552 PRO1933Q9H354 126 aa9.57□□□□□ -0.88
SHKBP1-223ENST00000600552 A0A0G2JQZ4 141 aa9.56□□□□□ -0.88
SHKBP1-223ENST00000600552 TEX49A0A1B0GTD5 131 aa9.56□□□□□ -0.88
SHKBP1-223ENST00000600552 KRTDAPP60985 99 aa9.56□□□□□ -0.88
SHKBP1-223ENST00000600552 A6NDN8 102 aa9.55□□□□□ -0.88
SHKBP1-223ENST00000600552 C3orf79P0CE67 100 aa9.55□□□□□ -0.88
SHKBP1-223ENST00000600552 LCE2CQ5TA81 110 aa9.55□□□□□ -0.88
SHKBP1-223ENST00000600552 LCE2DQ5TA82 110 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-223ENST00000600552 AKR1D1P51857 326 aa9.53□□□□□ -0.88
SHKBP1-223ENST00000600552 CD164Q04900 197 aa9.52□□□□□ -0.89
SHKBP1-223ENST00000600552 SMIM29Q86T20 159 aa9.5□□□□□ -0.89
SHKBP1-223ENST00000600552 ATOH7Q8N100 152 aa9.5□□□□□ -0.89
SHKBP1-223ENST00000600552 FSIP2Q5CZC0 6907 aa9.49□□□□□ -0.89
SHKBP1-223ENST00000600552 A0A1B0GWB2 263 aa9.49□□□□□ -0.89
SHKBP1-223ENST00000600552 ANKRD39Q53RE8 183 aa9.49□□□□□ -0.89
SHKBP1-223ENST00000600552 MUSTN1Q8IVN3 82 aa9.49□□□□□ -0.89
SHKBP1-223ENST00000600552 TRBV7-6A0A0J9YX20 115 aa9.48□□□□□ -0.89
SHKBP1-223ENST00000600552 MT1HP80294 61 aa9.48□□□□□ -0.89
SHKBP1-223ENST00000600552 KRTAP19-2Q3LHN2 52 aa9.48□□□□□ -0.89
SHKBP1-223ENST00000600552 C1orf195Q5TG92 126 aa9.48□□□□□ -0.89
SHKBP1-223ENST00000600552 COPS9Q8WXC6 57 aa9.48□□□□□ -0.89
SHKBP1-223ENST00000600552 C20orf202A1L168 122 aa9.47□□□□□ -0.89
SHKBP1-223ENST00000600552 IFITM1P13164 125 aa9.46□□□□□ -0.9
SHKBP1-223ENST00000600552 S100A1P23297 94 aa9.46□□□□□ -0.9
SHKBP1-223ENST00000600552 PCP2Q8IVA1 136 aa9.45□□□□□ -0.9
SHKBP1-223ENST00000600552 CRCT1Q9UGL9 99 aa9.45□□□□□ -0.9
SHKBP1-223ENST00000600552 IGLV5-48A0A075B6I7 105 aa9.43□□□□□ -0.9
SHKBP1-223ENST00000600552 SMIM11BQ8TCY0 68 aa9.43□□□□□ -0.9
SHKBP1-223ENST00000600552 M0R2T5 61 aa9.41□□□□□ -0.9
SHKBP1-223ENST00000600552 Q5XG85 94 aa9.41□□□□□ -0.9
SHKBP1-223ENST00000600552 COX6B2Q6YFQ2 88 aa9.41□□□□□ -0.9
SHKBP1-223ENST00000600552 NHP2Q9NX24 153 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-223ENST00000600552 TRAV13-2A0A0B4J235 113 aa9.4□□□□□ -0.9
SHKBP1-223ENST00000600552 A4D1N5 150 aa9.4□□□□□ -0.9
SHKBP1-223ENST00000600552 TCL1BO95988 128 aa9.4□□□□□ -0.9
SHKBP1-223ENST00000600552 CFC1BP0CG36 223 aa9.4□□□□□ -0.9
SHKBP1-223ENST00000600552 Q6ZVH6 145 aa9.4□□□□□ -0.9
SHKBP1-223ENST00000600552 F8WEM9 126 aa9.39□□□□□ -0.91
SHKBP1-223ENST00000600552 RPL37P61927 97 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-223ENST00000600552 VAMP3Q15836 100 aa9.37□□□□□ -0.91
SHKBP1-223ENST00000600552 COA6Q5JTJ3 125 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms