RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 J3KT08 172 aa10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 CNBPP62633 177 aaKnown RBP10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 TRBV7-7A0A0K0K1E9 115 aa10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 LCE6AA0A183 80 aa10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 INAFM2P0DMQ5 153 aa10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 C14orf132Q9NPU4 83 aa10.94□□□□□ -0.66
SHKBP1-216ENST00000598201 IGLV5-37A0A075B6J1 123 aa10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 TRBV7-6A0A0J9YX20 115 aa10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 FAM240AA0A1B0GVK7 77 aa10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 TMEM256-PLSCR3K7ERE1 68 aa10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 RPS28P62857 69 aaKnown RBP10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 Q6ZRN7 208 aaPredicted RBP10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 KCNQ1DNQ9H478 68 aa10.93□□□□□ -0.66
SHKBP1-216ENST00000598201 LRCOL1A6NCL2 159 aa10.92□□□□□ -0.66
SHKBP1-216ENST00000598201 M0R2N4 97 aa10.92□□□□□ -0.66
SHKBP1-216ENST00000598201 Q6ZQY7 126 aa10.92□□□□□ -0.66
SHKBP1-216ENST00000598201 RPL37AP8A6NKH3 93 aa10.91□□□□□ -0.66
SHKBP1-216ENST00000598201 FAM19A5Q7Z5A7 132 aaPredicted RBP10.91□□□□□ -0.66
SHKBP1-216ENST00000598201 LINC00528Q8N1L1 170 aa10.91□□□□□ -0.66
SHKBP1-216ENST00000598201 IMUPQ9GZP8 106 aa10.91□□□□□ -0.66
SHKBP1-216ENST00000598201 A0A096LNI7 61 aa10.9□□□□□ -0.66
SHKBP1-216ENST00000598201 C14orf177Q52M58 125 aa10.89□□□□□ -0.67
SHKBP1-216ENST00000598201 ALMS1Q8TCU4 4167 aa10.89□□□□□ -0.67
SHKBP1-216ENST00000598201 KMT2CQ8NEZ4 4911 aaKnown RBP10.88□□□□□ -0.67
SHKBP1-216ENST00000598201 IGLV1-50A0A075B6I6 118 aa10.88□□□□□ -0.67
SHKBP1-216ENST00000598201 GAGE2AQ6NT46 116 aa10.88□□□□□ -0.67
SHKBP1-216ENST00000598201 IGKV2-24A0A0C4DH68 120 aa10.87□□□□□ -0.67
SHKBP1-216ENST00000598201 C16orf90A8MZG2 172 aa10.87□□□□□ -0.67
SHKBP1-216ENST00000598201 C3orf22Q8N5N4 141 aa10.87□□□□□ -0.67
SHKBP1-216ENST00000598201 UQCRQO14949 82 aa10.86□□□□□ -0.67
SHKBP1-216ENST00000598201 KMT2AQ03164 3969 aa10.86□□□□□ -0.67
SHKBP1-216ENST00000598201 MRPL55Q7Z7F7 128 aaKnown RBP10.86□□□□□ -0.67
SHKBP1-216ENST00000598201 ACYP1P07311 99 aa10.86□□□□□ -0.67
SHKBP1-216ENST00000598201 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-216ENST00000598201 C9orf153Q5TBE3 101 aa10.85□□□□□ -0.67
SHKBP1-216ENST00000598201 A0A1W2PNN7 141 aa10.84□□□□□ -0.67
SHKBP1-216ENST00000598201 KRTAP4-16G5E9R7 235 aaPredicted RBP10.84□□□□□ -0.67
SHKBP1-216ENST00000598201 JMJD7-PLA2G4BH0Y9G9 81 aa10.84□□□□□ -0.67
SHKBP1-216ENST00000598201 SMCR5Q8TEV8 140 aa10.84□□□□□ -0.67
SHKBP1-216ENST00000598201 PRYO14603 147 aa10.83□□□□□ -0.68
SHKBP1-216ENST00000598201 SPRR1AP35321 89 aa10.83□□□□□ -0.68
SHKBP1-216ENST00000598201 HYDINQ4G0P3 5121 aa10.82□□□□□ -0.68
SHKBP1-216ENST00000598201 SACSQ9NZJ4 4579 aa10.82□□□□□ -0.68
SHKBP1-216ENST00000598201 CHTF8P0CG12 524 aa10.82□□□□□ -0.68
SHKBP1-216ENST00000598201 C9orf163Q8N9P6 203 aa10.81□□□□□ -0.68
SHKBP1-216ENST00000598201 Q6ZR54 194 aa10.81□□□□□ -0.68
SHKBP1-216ENST00000598201 LAMTOR3Q9UHA4 124 aa10.81□□□□□ -0.68
SHKBP1-216ENST00000598201 SDIM1Q6ZPB5 146 aa10.8□□□□□ -0.68
SHKBP1-216ENST00000598201 Q6ZRX8 168 aa10.8□□□□□ -0.68
SHKBP1-216ENST00000598201 CCKP06307 115 aa10.79□□□□□ -0.68
SHKBP1-216ENST00000598201 DNAH2Q9P225 4427 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 Q9BRP9 147 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 FAM236AA0A1B0GUQ0 79 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 FAM236BA0A1B0GV22 79 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 ETDCA0A1B0GVM5 59 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 H3BQ85 93 aa10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 RBM3P98179 157 aaKnown RBP10.78□□□□□ -0.68
SHKBP1-216ENST00000598201 A0A087WTM6 91 aa10.77□□□□□ -0.69
SHKBP1-216ENST00000598201 CRYGAP11844 174 aa10.77□□□□□ -0.69
SHKBP1-216ENST00000598201 LINC00846Q9NV44 126 aa10.77□□□□□ -0.69
SHKBP1-216ENST00000598201 REG3GQ6UW15 175 aa10.75□□□□□ -0.69
SHKBP1-216ENST00000598201 RYR2Q92736 4967 aa10.75□□□□□ -0.69
SHKBP1-216ENST00000598201 DNAH6Q9C0G6 4158 aa10.75□□□□□ -0.69
SHKBP1-216ENST00000598201 PANO1I0J062 215 aa10.74□□□□□ -0.69
SHKBP1-216ENST00000598201 FUSP35637 526 aaKnown RBP eCLIP10.74□□□□□ -0.69
SHKBP1-216ENST00000598201 Q6ZQT0 140 aa10.74□□□□□ -0.69
SHKBP1-216ENST00000598201 DHRS4-AS1Q9P1J3 65 aa10.74□□□□□ -0.69
SHKBP1-216ENST00000598201 COX7CP15954 63 aa10.73□□□□□ -0.69
SHKBP1-216ENST00000598201 LINC00643Q86TS7 51 aa10.73□□□□□ -0.69
SHKBP1-216ENST00000598201 LOC110117498A0A087WWA1 95 aa10.73□□□□□ -0.69
SHKBP1-216ENST00000598201 GHRHP01286 108 aa10.73□□□□□ -0.69
SHKBP1-216ENST00000598201 PHF5AQ7RTV0 110 aaKnown RBP10.73□□□□□ -0.69
SHKBP1-216ENST00000598201 LINC01547P58512 204 aaPredicted RBP10.72□□□□□ -0.69
SHKBP1-216ENST00000598201 KRTAP11-1Q8IUC1 163 aa10.72□□□□□ -0.69
SHKBP1-216ENST00000598201 DEFB105AQ8NG35 78 aa10.72□□□□□ -0.69
SHKBP1-216ENST00000598201 ERC2-IT1O76042 136 aa10.72□□□□□ -0.69
SHKBP1-216ENST00000598201 C1orf134Q5TEV5 83 aa10.72□□□□□ -0.69
SHKBP1-216ENST00000598201 Q8N377 158 aa10.71□□□□□ -0.69
SHKBP1-216ENST00000598201 ST20-AS1Q8NBB2 130 aa10.7□□□□□ -0.7
SHKBP1-216ENST00000598201 DSCR8Q96T75 97 aa10.7□□□□□ -0.7
SHKBP1-216ENST00000598201 RYR3Q15413 4870 aa10.7□□□□□ -0.7
SHKBP1-216ENST00000598201 TMEM258P61165 79 aa10.7□□□□□ -0.7
SHKBP1-216ENST00000598201 HECTD4Q9Y4D8 3996 aa10.69□□□□□ -0.7
SHKBP1-216ENST00000598201 TRBV7-4A0A0J9YYF1 115 aa10.69□□□□□ -0.7
SHKBP1-216ENST00000598201 UBE2BP63146 152 aa10.69□□□□□ -0.7
SHKBP1-216ENST00000598201 PKIGQ9Y2B9 76 aa10.69□□□□□ -0.7
SHKBP1-216ENST00000598201 DNAH17Q9UFH2 4485 aa10.68□□□□□ -0.7
SHKBP1-216ENST00000598201 LINC00474Q9P2X8 69 aa10.67□□□□□ -0.7
SHKBP1-216ENST00000598201 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.67□□□□□ -0.7
SHKBP1-216ENST00000598201 ATOX1O00244 68 aa10.66□□□□□ -0.7
SHKBP1-216ENST00000598201 RTL8CO15255 209 aa10.66□□□□□ -0.7
SHKBP1-216ENST00000598201 PRLHP81277 87 aa10.66□□□□□ -0.7
SHKBP1-216ENST00000598201 FAM19A1Q7Z5A9 133 aa10.66□□□□□ -0.7
SHKBP1-216ENST00000598201 HIST1H4AP62805 103 aaKnown RBP10.65□□□□□ -0.7
SHKBP1-216ENST00000598201 SPACA4Q8TDM5 124 aa10.65□□□□□ -0.7
SHKBP1-216ENST00000598201 IGLV5-48A0A075B6I7 105 aa10.64□□□□□ -0.71
SHKBP1-216ENST00000598201 PDE6GP18545 87 aa10.64□□□□□ -0.71
SHKBP1-216ENST00000598201 DPH3Q96FX2 82 aa10.64□□□□□ -0.71
SHKBP1-216ENST00000598201 IGKV3D-7A0A0C4DH55 119 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms