RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ZNF706Q9Y5V0 76 aaPredicted RBP8.82□□□□□ -1
TRIM28-205ENST00000595028 ZNF815PA8K554 130 aa8.81□□□□□ -1
TRIM28-205ENST00000595028 TIMM17BO60830 172 aa8.81□□□□□ -1
TRIM28-205ENST00000595028 IGLV6-57P01721 117 aa8.81□□□□□ -1
TRIM28-205ENST00000595028 SMCR5Q8TEV8 140 aa8.81□□□□□ -1
TRIM28-205ENST00000595028 B5MCH6 92 aa8.8□□□□□ -1
TRIM28-205ENST00000595028 PRR4Q16378 134 aa8.8□□□□□ -1
TRIM28-205ENST00000595028 S100A7L2Q5SY68 101 aa8.8□□□□□ -1
TRIM28-205ENST00000595028 AKR1D1P51857 326 aa8.79□□□□□ -1
TRIM28-205ENST00000595028 C3orf22Q8N5N4 141 aa8.79□□□□□ -1
TRIM28-205ENST00000595028 TTTY13Q9BZ97 58 aa8.79□□□□□ -1
TRIM28-205ENST00000595028 TRAV23DV6A0A075B6W5 121 aa8.78□□□□□ -1
TRIM28-205ENST00000595028 A0A0U1RQV1 116 aa8.78□□□□□ -1
TRIM28-205ENST00000595028 LINC00308Q8TCZ7 52 aa8.78□□□□□ -1
TRIM28-205ENST00000595028 SCGB1D1O95968 90 aa8.77□□□□□ -1.01
TRIM28-205ENST00000595028 Q6ZRX8 168 aa8.77□□□□□ -1.01
TRIM28-205ENST00000595028 SPANXCQ9NY87 97 aa8.77□□□□□ -1.01
TRIM28-205ENST00000595028 ANKRD39Q53RE8 183 aa8.76□□□□□ -1.01
TRIM28-205ENST00000595028 LCE2AQ5TA79 106 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-205ENST00000595028 LINC00483Q53H64 154 aa8.75□□□□□ -1.01
TRIM28-205ENST00000595028 Q9BRP9 147 aa8.75□□□□□ -1.01
TRIM28-205ENST00000595028 ZNF73O43830 326 aaPredicted RBP8.74□□□□□ -1.01
TRIM28-205ENST00000595028 ERC2-IT1O76042 136 aa8.74□□□□□ -1.01
TRIM28-205ENST00000595028 ATOH7Q8N100 152 aa8.74□□□□□ -1.01
TRIM28-205ENST00000595028 PPDPFQ9H3Y8 114 aa8.74□□□□□ -1.01
TRIM28-205ENST00000595028 CTAG1AP78358 180 aa8.73□□□□□ -1.01
TRIM28-205ENST00000595028 SCGB1D4Q6XE38 83 aa8.73□□□□□ -1.01
TRIM28-205ENST00000595028 CBY1Q9Y3M2 126 aa8.73□□□□□ -1.01
TRIM28-205ENST00000595028 HSBP1L1C9JCN9 74 aa8.72□□□□□ -1.01
TRIM28-205ENST00000595028 JOSD1Q15040 202 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-205ENST00000595028 GAGE2AQ6NT46 116 aa8.72□□□□□ -1.01
TRIM28-205ENST00000595028 RETNLBQ9BQ08 111 aa8.71□□□□□ -1.02
TRIM28-205ENST00000595028 SPANXDQ9BXN6 97 aa8.71□□□□□ -1.02
TRIM28-205ENST00000595028 OR13C6PQ8NH95 151 aa8.7□□□□□ -1.02
TRIM28-205ENST00000595028 SPAG11AQ6PDA7 123 aa8.69□□□□□ -1.02
TRIM28-205ENST00000595028 PCP2Q8IVA1 136 aa8.69□□□□□ -1.02
TRIM28-205ENST00000595028 Q8NBF4 154 aa8.69□□□□□ -1.02
TRIM28-205ENST00000595028 LINC00518Q8N0U6 118 aa8.68□□□□□ -1.02
TRIM28-205ENST00000595028 HINT1P49773 126 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-205ENST00000595028 COPS9Q8WXC6 57 aa8.67□□□□□ -1.02
TRIM28-205ENST00000595028 FSIP2Q5CZC0 6907 aa8.66□□□□□ -1.02
TRIM28-205ENST00000595028 IFITM1P13164 125 aa8.66□□□□□ -1.02
TRIM28-205ENST00000595028 MOBPQ13875 183 aa8.66□□□□□ -1.02
TRIM28-205ENST00000595028 C4orf48Q5BLP8 95 aa8.66□□□□□ -1.02
TRIM28-205ENST00000595028 Q6ZVH6 145 aa8.66□□□□□ -1.02
TRIM28-205ENST00000595028 IGLV9-49A0A0B4J1Y8 123 aa8.65□□□□□ -1.02
TRIM28-205ENST00000595028 PYY3Q5JQD4 70 aa8.65□□□□□ -1.02
TRIM28-205ENST00000595028 VAMP8Q9BV40 100 aa8.65□□□□□ -1.02
TRIM28-205ENST00000595028 ST20-AS1Q8NBB2 130 aa8.64□□□□□ -1.03
TRIM28-205ENST00000595028 ELOF1P60002 83 aaKnown RBP8.63□□□□□ -1.03
TRIM28-205ENST00000595028 PAM16Q9Y3D7 125 aa8.63□□□□□ -1.03
TRIM28-205ENST00000595028 IGLV7-46A0A075B6I9 117 aa8.62□□□□□ -1.03
TRIM28-205ENST00000595028 LOC105371267A0A1B0GV96 52 aa8.62□□□□□ -1.03
TRIM28-205ENST00000595028 C6orf99Q4VX62 202 aa8.62□□□□□ -1.03
TRIM28-205ENST00000595028 DHRS4-AS1Q9P1J3 65 aa8.62□□□□□ -1.03
TRIM28-205ENST00000595028 SPINK1P00995 79 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 COX7BP24311 80 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 TPRXLQ17RH7 258 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 SPATA45Q537H7 98 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 SSBP3-AS1Q7Z2R9 100 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 MUSTN1Q8IVN3 82 aa8.61□□□□□ -1.03
TRIM28-205ENST00000595028 MUC17Q685J3 4493 aa8.6□□□□□ -1.03
TRIM28-205ENST00000595028 SPRR1BP22528 89 aa8.59□□□□□ -1.03
TRIM28-205ENST00000595028 C9orf153Q5TBE3 101 aa8.59□□□□□ -1.03
TRIM28-205ENST00000595028 TRBV7-6A0A0J9YX20 115 aa8.58□□□□□ -1.04
TRIM28-205ENST00000595028 A6NDN8 102 aa8.58□□□□□ -1.04
TRIM28-205ENST00000595028 SMIM6P0DI80 62 aa8.58□□□□□ -1.04
TRIM28-205ENST00000595028 RPS29P62273 56 aaKnown RBP8.58□□□□□ -1.04
TRIM28-205ENST00000595028 FP248Q71RG6 208 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-205ENST00000595028 TRAV13-2A0A0B4J235 113 aa8.55□□□□□ -1.04
TRIM28-205ENST00000595028 A0A1B0GWB2 263 aa8.55□□□□□ -1.04
TRIM28-205ENST00000595028 COX8AP10176 69 aa8.55□□□□□ -1.04
TRIM28-205ENST00000595028 SLC25A34Q6PIV7 304 aa8.55□□□□□ -1.04
TRIM28-205ENST00000595028 CDIP1Q9H305 208 aa8.55□□□□□ -1.04
TRIM28-205ENST00000595028 C14orf144Q96I85 54 aa8.54□□□□□ -1.04
TRIM28-205ENST00000595028 CRCT1Q9UGL9 99 aa8.54□□□□□ -1.04
TRIM28-205ENST00000595028 Q8N377 158 aa8.53□□□□□ -1.04
TRIM28-205ENST00000595028 LAMTOR3Q9UHA4 124 aa8.52□□□□□ -1.05
TRIM28-205ENST00000595028 A4D1N5 150 aa8.51□□□□□ -1.05
TRIM28-205ENST00000595028 SMIM11BQ8TCY0 68 aa8.51□□□□□ -1.05
TRIM28-205ENST00000595028 DLEU1O43261 78 aa8.5□□□□□ -1.05
TRIM28-205ENST00000595028 SLC25A20O43772 301 aa8.5□□□□□ -1.05
TRIM28-205ENST00000595028 TAL2Q16559 108 aa8.5□□□□□ -1.05
TRIM28-205ENST00000595028 IGLV5-48A0A075B6I7 105 aa8.49□□□□□ -1.05
TRIM28-205ENST00000595028 TEX49A0A1B0GTD5 131 aa8.49□□□□□ -1.05
TRIM28-205ENST00000595028 KRTAP13-3Q3SY46 172 aa8.49□□□□□ -1.05
TRIM28-205ENST00000595028 DEFB105AQ8NG35 78 aa8.49□□□□□ -1.05
TRIM28-205ENST00000595028 C12orf57Q99622 126 aa8.49□□□□□ -1.05
TRIM28-205ENST00000595028 Q1RN00 199 aa8.48□□□□□ -1.05
TRIM28-205ENST00000595028 NHP2Q9NX24 153 aaKnown RBP8.48□□□□□ -1.05
TRIM28-205ENST00000595028 LINC01547P58512 204 aaPredicted RBP8.47□□□□□ -1.05
TRIM28-205ENST00000595028 LCE2DQ5TA82 110 aaPredicted RBP8.47□□□□□ -1.05
TRIM28-205ENST00000595028 UQCR10Q9UDW1 63 aa8.47□□□□□ -1.05
TRIM28-205ENST00000595028 SMIM29Q86T20 159 aa8.46□□□□□ -1.06
TRIM28-205ENST00000595028 HIST1H4GQ99525 98 aa8.45□□□□□ -1.06
TRIM28-205ENST00000595028 LIMD2Q9BT23 127 aa8.45□□□□□ -1.06
TRIM28-205ENST00000595028 PRO1933Q9H354 126 aa8.45□□□□□ -1.06
TRIM28-205ENST00000595028 HIGD1BQ9P298 99 aa8.44□□□□□ -1.06
TRIM28-205ENST00000595028 TSTD3H0UI37 97 aa8.43□□□□□ -1.06
TRIM28-205ENST00000595028 VAMP3Q15836 100 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms