RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 ETDCA0A1B0GVM5 59 aa6.21□□□□□ -1.42
VPS4B-202ENST00000588059 KCNQ1DNQ9H478 68 aa6.21□□□□□ -1.42
VPS4B-202ENST00000588059 LOC107984156A0A0G2JMH3 177 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 C20orf202A1L168 122 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 S100A1P23297 94 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 DDTP30046 118 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 S100A7L2Q5SY68 101 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 ADAMTSL4-AS1Q5T5F5 129 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 ARL17AQ8IVW1 177 aa6.2□□□□□ -1.42
VPS4B-202ENST00000588059 SPANXB1Q9NS25 103 aaPredicted RBP6.2□□□□□ -1.42
VPS4B-202ENST00000588059 TRBV10-2A0A0K0K1G8 114 aa6.19□□□□□ -1.42
VPS4B-202ENST00000588059 ZNF815PA8K554 130 aa6.19□□□□□ -1.42
VPS4B-202ENST00000588059 SOSTDC1Q6X4U4 206 aa6.19□□□□□ -1.42
VPS4B-202ENST00000588059 NDUFC2O95298 119 aa6.18□□□□□ -1.42
VPS4B-202ENST00000588059 SPRR1AP35321 89 aa6.18□□□□□ -1.42
VPS4B-202ENST00000588059 KRTAP19-2Q3LHN2 52 aa6.18□□□□□ -1.42
VPS4B-202ENST00000588059 TTTY13Q9BZ97 58 aa6.18□□□□□ -1.42
VPS4B-202ENST00000588059 EIF4EBP3O60516 100 aaPredicted RBP6.17□□□□□ -1.42
VPS4B-202ENST00000588059 MT1HP80294 61 aa6.17□□□□□ -1.42
VPS4B-202ENST00000588059 C4orf48Q5BLP8 95 aa6.17□□□□□ -1.42
VPS4B-202ENST00000588059 ATOH7Q8N100 152 aa6.17□□□□□ -1.42
VPS4B-202ENST00000588059 SMCR5Q8TEV8 140 aa6.17□□□□□ -1.42
VPS4B-202ENST00000588059 ZNF706Q9Y5V0 76 aaPredicted RBP6.17□□□□□ -1.42
VPS4B-202ENST00000588059 KRTAP4-16G5E9R7 235 aaPredicted RBP6.16□□□□□ -1.42
VPS4B-202ENST00000588059 TIMM17BO60830 172 aa6.16□□□□□ -1.42
VPS4B-202ENST00000588059 Q8NBF4 154 aa6.16□□□□□ -1.42
VPS4B-202ENST00000588059 LINC00308Q8TCZ7 52 aa6.16□□□□□ -1.42
VPS4B-202ENST00000588059 SPRR4Q96PI1 79 aa6.16□□□□□ -1.42
VPS4B-202ENST00000588059 LITAFQ99732 161 aa6.16□□□□□ -1.42
VPS4B-202ENST00000588059 TRAV23DV6A0A075B6W5 121 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 B5MCH6 92 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 IGLV6-57P01721 117 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 CFC1BP0CG36 223 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 S100A2P29034 98 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 SCGB1D4Q6XE38 83 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 OR13C6PQ8NH95 151 aa6.15□□□□□ -1.42
VPS4B-202ENST00000588059 ANKRD39Q53RE8 183 aa6.14□□□□□ -1.43
VPS4B-202ENST00000588059 XP32Q5T750 250 aa6.14□□□□□ -1.43
VPS4B-202ENST00000588059 SPANXCQ9NY87 97 aa6.14□□□□□ -1.43
VPS4B-202ENST00000588059 SPINK1P00995 79 aa6.13□□□□□ -1.43
VPS4B-202ENST00000588059 S100A6P06703 90 aa6.13□□□□□ -1.43
VPS4B-202ENST00000588059 LORP23490 312 aaPredicted RBP6.13□□□□□ -1.43
VPS4B-202ENST00000588059 AKR1D1P51857 326 aa6.13□□□□□ -1.43
VPS4B-202ENST00000588059 GAGE2AQ6NT46 116 aa6.13□□□□□ -1.43
VPS4B-202ENST00000588059 HIST3H2BBQ8N257 126 aa6.13□□□□□ -1.43
VPS4B-202ENST00000588059 ZNF73O43830 326 aaPredicted RBP6.12□□□□□ -1.43
VPS4B-202ENST00000588059 ERC2-IT1O76042 136 aa6.12□□□□□ -1.43
VPS4B-202ENST00000588059 Q6ZRX8 168 aa6.12□□□□□ -1.43
VPS4B-202ENST00000588059 HIST1H2BLQ99880 126 aa6.12□□□□□ -1.43
VPS4B-202ENST00000588059 CBY1Q9Y3M2 126 aa6.12□□□□□ -1.43
VPS4B-202ENST00000588059 HINT1P49773 126 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-202ENST00000588059 KRTAP10-6P60371 365 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-202ENST00000588059 JOSD1Q15040 202 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-202ENST00000588059 PCP2Q8IVA1 136 aa6.11□□□□□ -1.43
VPS4B-202ENST00000588059 Q9BRP9 147 aa6.11□□□□□ -1.43
VPS4B-202ENST00000588059 LINC00518Q8N0U6 118 aa6.1□□□□□ -1.43
VPS4B-202ENST00000588059 Q8N377 158 aa6.1□□□□□ -1.43
VPS4B-202ENST00000588059 SPANXDQ9BXN6 97 aa6.1□□□□□ -1.43
VPS4B-202ENST00000588059 IGLV9-49A0A0B4J1Y8 123 aa6.09□□□□□ -1.43
VPS4B-202ENST00000588059 HSBP1L1C9JCN9 74 aa6.09□□□□□ -1.43
VPS4B-202ENST00000588059 SNRPEP62304 92 aaKnown RBP6.09□□□□□ -1.43
VPS4B-202ENST00000588059 COPS9Q8WXC6 57 aa6.09□□□□□ -1.43
VPS4B-202ENST00000588059 RPS29P62273 56 aaKnown RBP6.08□□□□□ -1.44
VPS4B-202ENST00000588059 LINC00483Q53H64 154 aa6.08□□□□□ -1.44
VPS4B-202ENST00000588059 KRTAP9-7A8MTY7 169 aa6.07□□□□□ -1.44
VPS4B-202ENST00000588059 IFITM1P13164 125 aa6.07□□□□□ -1.44
VPS4B-202ENST00000588059 MOBPQ13875 183 aa6.07□□□□□ -1.44
VPS4B-202ENST00000588059 MUSTN1Q8IVN3 82 aa6.07□□□□□ -1.44
VPS4B-202ENST00000588059 A6NDN8 102 aa6.06□□□□□ -1.44
VPS4B-202ENST00000588059 Q6ZVH6 145 aa6.06□□□□□ -1.44
VPS4B-202ENST00000588059 ST20-AS1Q8NBB2 130 aa6.06□□□□□ -1.44
VPS4B-202ENST00000588059 SLC25A20O43772 301 aa6.05□□□□□ -1.44
VPS4B-202ENST00000588059 SCGB1D1O95968 90 aa6.05□□□□□ -1.44
VPS4B-202ENST00000588059 COX7BP24311 80 aa6.05□□□□□ -1.44
VPS4B-202ENST00000588059 C6orf99Q4VX62 202 aa6.05□□□□□ -1.44
VPS4B-202ENST00000588059 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.04□□□□□ -1.44
VPS4B-202ENST00000588059 C9orf153Q5TBE3 101 aa6.04□□□□□ -1.44
VPS4B-202ENST00000588059 DHRS4-AS1Q9P1J3 65 aa6.04□□□□□ -1.44
VPS4B-202ENST00000588059 IGLV8-61A0A075B6I0 122 aa6.03□□□□□ -1.44
VPS4B-202ENST00000588059 ELOF1P60002 83 aaKnown RBP6.03□□□□□ -1.44
VPS4B-202ENST00000588059 PCOTHQ58A44 107 aa6.03□□□□□ -1.44
VPS4B-202ENST00000588059 SSBP3-AS1Q7Z2R9 100 aa6.03□□□□□ -1.44
VPS4B-202ENST00000588059 C5orf52A6NGY3 159 aa6.02□□□□□ -1.45
VPS4B-202ENST00000588059 FLGP20930 4061 aaPredicted RBP6.01□□□□□ -1.45
VPS4B-202ENST00000588059 TRAV13-2A0A0B4J235 113 aa6.01□□□□□ -1.45
VPS4B-202ENST00000588059 TAL2Q16559 108 aa6□□□□□ -1.45
VPS4B-202ENST00000588059 SLC25A34Q6PIV7 304 aa6□□□□□ -1.45
VPS4B-202ENST00000588059 DEFB105AQ8NG35 78 aa6□□□□□ -1.45
VPS4B-202ENST00000588059 TRBV7-6A0A0J9YX20 115 aa5.99□□□□□ -1.45
VPS4B-202ENST00000588059 A0A1B0GWB2 263 aa5.99□□□□□ -1.45
VPS4B-202ENST00000588059 M0R2T5 61 aa5.99□□□□□ -1.45
VPS4B-202ENST00000588059 SPRR1BP22528 89 aa5.98□□□□□ -1.45
VPS4B-202ENST00000588059 SMIM11BQ8TCY0 68 aa5.98□□□□□ -1.45
VPS4B-202ENST00000588059 LAMTOR3Q9UHA4 124 aa5.98□□□□□ -1.45
VPS4B-202ENST00000588059 A4D1N5 150 aa5.97□□□□□ -1.45
VPS4B-202ENST00000588059 Q1RN00 199 aa5.97□□□□□ -1.45
VPS4B-202ENST00000588059 HIST1H4GQ99525 98 aa5.97□□□□□ -1.45
VPS4B-202ENST00000588059 COX8AP10176 69 aa5.96□□□□□ -1.46
VPS4B-202ENST00000588059 C12orf57Q99622 126 aa5.96□□□□□ -1.46
VPS4B-202ENST00000588059 TEX49A0A1B0GTD5 131 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms