RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 ASB16-AS1Q495Z4 193 aa12.37□□□□□ -0.43
SHMT1-210ENST00000583780 ARL17AQ8IVW1 177 aa12.37□□□□□ -0.43
SHMT1-210ENST00000583780 AKR1D1P51857 326 aa12.36□□□□□ -0.43
SHMT1-210ENST00000583780 KRTAP13-3Q3SY46 172 aa12.35□□□□□ -0.43
SHMT1-210ENST00000583780 SOSTDC1Q6X4U4 206 aa12.35□□□□□ -0.43
SHMT1-210ENST00000583780 TRBV10-3A0A0K0K1G6 114 aa12.34□□□□□ -0.43
SHMT1-210ENST00000583780 LITAFQ99732 161 aa12.34□□□□□ -0.43
SHMT1-210ENST00000583780 PRYO14603 147 aa12.33□□□□□ -0.44
SHMT1-210ENST00000583780 EIF4EBP3O60516 100 aaPredicted RBP12.33□□□□□ -0.44
SHMT1-210ENST00000583780 FP248Q71RG6 208 aaPredicted RBP12.33□□□□□ -0.44
SHMT1-210ENST00000583780 SPANXB1Q9NS25 103 aaPredicted RBP12.33□□□□□ -0.44
SHMT1-210ENST00000583780 TIMM17BO60830 172 aa12.32□□□□□ -0.44
SHMT1-210ENST00000583780 SPAG11AQ6PDA7 123 aa12.32□□□□□ -0.44
SHMT1-210ENST00000583780 SCGB1D4Q6XE38 83 aa12.32□□□□□ -0.44
SHMT1-210ENST00000583780 DDTP30046 118 aa12.31□□□□□ -0.44
SHMT1-210ENST00000583780 TRBV10-2A0A0K0K1G8 114 aa12.3□□□□□ -0.44
SHMT1-210ENST00000583780 NDUFC2O95298 119 aa12.3□□□□□ -0.44
SHMT1-210ENST00000583780 LINC00337Q8N6G1 96 aa12.3□□□□□ -0.44
SHMT1-210ENST00000583780 LINC00308Q8TCZ7 52 aa12.3□□□□□ -0.44
SHMT1-210ENST00000583780 C5orf52A6NGY3 159 aa12.29□□□□□ -0.44
SHMT1-210ENST00000583780 S100A12P80511 92 aa12.29□□□□□ -0.44
SHMT1-210ENST00000583780 S100A7L2Q5SY68 101 aa12.29□□□□□ -0.44
SHMT1-210ENST00000583780 KCNQ1DNQ9H478 68 aa12.29□□□□□ -0.44
SHMT1-210ENST00000583780 PCP2Q8IVA1 136 aa12.28□□□□□ -0.44
SHMT1-210ENST00000583780 HIGD2AQ9BW72 106 aa12.28□□□□□ -0.44
SHMT1-210ENST00000583780 ETDCA0A1B0GVM5 59 aa12.27□□□□□ -0.45
SHMT1-210ENST00000583780 HSBP1L1C9JCN9 74 aa12.27□□□□□ -0.45
SHMT1-210ENST00000583780 SCGB1D1O95968 90 aa12.26□□□□□ -0.45
SHMT1-210ENST00000583780 SPANXCQ9NY87 97 aa12.25□□□□□ -0.45
SHMT1-210ENST00000583780 SPRR1AP35321 89 aa12.24□□□□□ -0.45
SHMT1-210ENST00000583780 SPRR4Q96PI1 79 aa12.24□□□□□ -0.45
SHMT1-210ENST00000583780 SPANXDQ9BXN6 97 aa12.23□□□□□ -0.45
SHMT1-210ENST00000583780 IGLV6-57P01721 117 aa12.22□□□□□ -0.45
SHMT1-210ENST00000583780 LCE2CQ5TA81 110 aa12.22□□□□□ -0.45
SHMT1-210ENST00000583780 TRAV23DV6A0A075B6W5 121 aa12.21□□□□□ -0.45
SHMT1-210ENST00000583780 KRTAP4-16G5E9R7 235 aaPredicted RBP12.21□□□□□ -0.45
SHMT1-210ENST00000583780 SEC61BP60468 96 aaKnown RBP12.21□□□□□ -0.45
SHMT1-210ENST00000583780 C4orf48Q5BLP8 95 aa12.21□□□□□ -0.45
SHMT1-210ENST00000583780 OR13C6PQ8NH95 151 aa12.21□□□□□ -0.45
SHMT1-210ENST00000583780 B5MCH6 92 aa12.18□□□□□ -0.46
SHMT1-210ENST00000583780 Q8NBF4 154 aa12.18□□□□□ -0.46
SHMT1-210ENST00000583780 COPS9Q8WXC6 57 aa12.17□□□□□ -0.46
SHMT1-210ENST00000583780 IFITM1P13164 125 aa12.16□□□□□ -0.46
SHMT1-210ENST00000583780 SMCR5Q8TEV8 140 aa12.16□□□□□ -0.46
SHMT1-210ENST00000583780 ZNF73O43830 326 aaPredicted RBP12.15□□□□□ -0.46
SHMT1-210ENST00000583780 Q6ZVH6 145 aa12.15□□□□□ -0.46
SHMT1-210ENST00000583780 MUSTN1Q8IVN3 82 aa12.15□□□□□ -0.46
SHMT1-210ENST00000583780 SPINK1P00995 79 aa12.14□□□□□ -0.47
SHMT1-210ENST00000583780 LINC00518Q8N0U6 118 aa12.14□□□□□ -0.47
SHMT1-210ENST00000583780 CBY1Q9Y3M2 126 aa12.14□□□□□ -0.47
SHMT1-210ENST00000583780 ZNF706Q9Y5V0 76 aaPredicted RBP12.14□□□□□ -0.47
SHMT1-210ENST00000583780 Q6ZRX8 168 aa12.13□□□□□ -0.47
SHMT1-210ENST00000583780 KRTAP19-2Q3LHN2 52 aa12.12□□□□□ -0.47
SHMT1-210ENST00000583780 Q9BRP9 147 aa12.11□□□□□ -0.47
SHMT1-210ENST00000583780 TMA7Q9Y2S6 64 aaKnown RBP12.11□□□□□ -0.47
SHMT1-210ENST00000583780 HINT1P49773 126 aaPredicted RBP12.1□□□□□ -0.47
SHMT1-210ENST00000583780 ERC2-IT1O76042 136 aa12.09□□□□□ -0.47
SHMT1-210ENST00000583780 JOSD1Q15040 202 aaPredicted RBP12.09□□□□□ -0.47
SHMT1-210ENST00000583780 XP32Q5T750 250 aa12.09□□□□□ -0.47
SHMT1-210ENST00000583780 A6NDN8 102 aa12.07□□□□□ -0.48
SHMT1-210ENST00000583780 Q8N377 158 aa12.07□□□□□ -0.48
SHMT1-210ENST00000583780 PAM16Q9Y3D7 125 aa12.07□□□□□ -0.48
SHMT1-210ENST00000583780 COX8AP10176 69 aa12.06□□□□□ -0.48
SHMT1-210ENST00000583780 GAGE2AQ6NT46 116 aa12.06□□□□□ -0.48
SHMT1-210ENST00000583780 MT1HP80294 61 aa12.05□□□□□ -0.48
SHMT1-210ENST00000583780 SPATA45Q537H7 98 aa12.05□□□□□ -0.48
SHMT1-210ENST00000583780 C6orf99Q4VX62 202 aa12.04□□□□□ -0.48
SHMT1-210ENST00000583780 LINC00483Q53H64 154 aa12.04□□□□□ -0.48
SHMT1-210ENST00000583780 VAMP8Q9BV40 100 aa12.04□□□□□ -0.48
SHMT1-210ENST00000583780 RPS29P62273 56 aaKnown RBP12.02□□□□□ -0.49
SHMT1-210ENST00000583780 C14orf144Q96I85 54 aa12.02□□□□□ -0.49
SHMT1-210ENST00000583780 TRAV13-2A0A0B4J235 113 aa12.01□□□□□ -0.49
SHMT1-210ENST00000583780 COX7BP24311 80 aa12.01□□□□□ -0.49
SHMT1-210ENST00000583780 HIST1H4GQ99525 98 aa12□□□□□ -0.49
SHMT1-210ENST00000583780 A4D1N5 150 aa11.99□□□□□ -0.49
SHMT1-210ENST00000583780 ELOF1P60002 83 aaKnown RBP11.99□□□□□ -0.49
SHMT1-210ENST00000583780 SSBP3-AS1Q7Z2R9 100 aa11.99□□□□□ -0.49
SHMT1-210ENST00000583780 ST20-AS1Q8NBB2 130 aa11.99□□□□□ -0.49
SHMT1-210ENST00000583780 DLEU1O43261 78 aa11.98□□□□□ -0.49
SHMT1-210ENST00000583780 DHRS4-AS1Q9P1J3 65 aa11.98□□□□□ -0.49
SHMT1-210ENST00000583780 SLC25A20O43772 301 aa11.97□□□□□ -0.49
SHMT1-210ENST00000583780 IGLV9-49A0A0B4J1Y8 123 aa11.96□□□□□ -0.49
SHMT1-210ENST00000583780 MOBPQ13875 183 aa11.96□□□□□ -0.49
SHMT1-210ENST00000583780 LORP23490 312 aaPredicted RBP11.95□□□□□ -0.5
SHMT1-210ENST00000583780 SLC25A34Q6PIV7 304 aa11.95□□□□□ -0.5
SHMT1-210ENST00000583780 C12orf57Q99622 126 aa11.95□□□□□ -0.5
SHMT1-210ENST00000583780 PYY3Q5JQD4 70 aa11.94□□□□□ -0.5
SHMT1-210ENST00000583780 SMIM11BQ8TCY0 68 aa11.94□□□□□ -0.5
SHMT1-210ENST00000583780 TRBV7-6A0A0J9YX20 115 aa11.93□□□□□ -0.5
SHMT1-210ENST00000583780 A0A1B0GWB2 263 aa11.93□□□□□ -0.5
SHMT1-210ENST00000583780 CFC1BP0CG36 223 aa11.92□□□□□ -0.5
SHMT1-210ENST00000583780 KRTAP10-6P60371 365 aaPredicted RBP11.9□□□□□ -0.5
SHMT1-210ENST00000583780 HIGD1BQ9P298 99 aa11.9□□□□□ -0.5
SHMT1-210ENST00000583780 C9orf153Q5TBE3 101 aa11.89□□□□□ -0.51
SHMT1-210ENST00000583780 C2orf91Q6ZV80 131 aa11.89□□□□□ -0.51
SHMT1-210ENST00000583780 PCOTHQ58A44 107 aa11.88□□□□□ -0.51
SHMT1-210ENST00000583780 DEFB105AQ8NG35 78 aa11.87□□□□□ -0.51
SHMT1-210ENST00000583780 TAL2Q16559 108 aa11.86□□□□□ -0.51
SHMT1-210ENST00000583780 IGLV8-61A0A075B6I0 122 aa11.84□□□□□ -0.51
SHMT1-210ENST00000583780 SPRR1BP22528 89 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms