RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 IGKV3D-7A0A0C4DH55 119 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 A0A1B0GUV1 79 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 OXTP01178 125 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 Q5XG85 94 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 STHQ8IWL8 128 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 Q8N814 137 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 Q8NAQ8 132 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 KRTAP3-1Q9BYR8 98 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 C11orf68Q9H3H3 251 aaKnown RBP4.5□□□□□ -1.69
NUP88-206ENST00000573169 APLNQ9ULZ1 77 aa4.5□□□□□ -1.69
NUP88-206ENST00000573169 TRAV7A0A075B6U4 112 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 LOC100131303A0A0U1RQF7 123 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 LINC00959A0A1B0GUT2 108 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 NCR3O14931 201 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 LINC00612Q8N6U2 182 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 XCL2Q9UBD3 114 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 CELA1Q9UNI1 258 aa4.49□□□□□ -1.69
NUP88-206ENST00000573169 IGLV4-60A0A075B6I1 120 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 A0A087WVE0 104 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 PDE6GP18545 87 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 KLKP1Q107X0 134 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 FHL2Q14192 279 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 Q6ZTC4 211 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 C6orf223Q8N319 242 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 CSNK1G2-AS1Q8NCQ2 148 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 DNAH17Q9UFH2 4485 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 KIAA1109Q2LD37 5005 aa4.48□□□□□ -1.69
NUP88-206ENST00000573169 DNAH2Q9P225 4427 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 HECTD4Q9Y4D8 3996 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 DYNC1H1Q14204 4646 aaKnown RBP4.47□□□□□ -1.69
NUP88-206ENST00000573169 KIAA0087Q14695 138 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 Q6ZQT0 140 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 UBL5Q9BZL1 73 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 SERP1Q9Y6X1 66 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 FAT2Q9NYQ8 4349 aa4.47□□□□□ -1.69
NUP88-206ENST00000573169 TRAV10A0A0B4J240 114 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 MIFP14174 115 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 XCL1P47992 114 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 CXCL6P80162 114 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 C6orf226Q5I0X4 101 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 LINC00575Q6W349 94 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 NOP10Q9NPE3 64 aaKnown RBP4.46□□□□□ -1.7
NUP88-206ENST00000573169 TOMM7Q9P0U1 55 aa4.46□□□□□ -1.7
NUP88-206ENST00000573169 PCLOQ9Y6V0 5065 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 H7BZZ5 65 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 M0R2N4 97 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 NDUFC1O43677 76 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 SLPIP03973 132 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 DSCR8Q96T75 97 aa4.45□□□□□ -1.7
NUP88-206ENST00000573169 DEFB131BA0A096LNP1 70 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 FAM236DA0A1B0GTK5 79 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 ERC2-IT1O76042 136 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 FAM236CP0DP71 79 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 PFN2P35080 140 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 ATP5EP56381 51 aaPredicted RBP4.44□□□□□ -1.7
NUP88-206ENST00000573169 FAM19A1Q7Z5A9 133 aa4.44□□□□□ -1.7
NUP88-206ENST00000573169 TRGV2A0A075B6R0 118 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 TRGV4A0A0C4DH28 118 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 TRBV7-6A0A0J9YX20 115 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 IGLV6-57P01721 117 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 RBM3P98179 157 aaKnown RBP4.43□□□□□ -1.7
NUP88-206ENST00000573169 CD164L2Q6UWJ8 174 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 ENHOQ6UWT2 76 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 DNAH11Q96DT5 4516 aa4.43□□□□□ -1.7
NUP88-206ENST00000573169 TRAV23DV6A0A075B6W5 121 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 SMIM26A0A096LP01 95 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 GVQW2A0A096LPI5 108 aaPredicted RBP4.42□□□□□ -1.7
NUP88-206ENST00000573169 A0A1B0GVY2 172 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 RTL8CO15255 209 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 HTN3P15516 51 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 LINC01547P58512 204 aaPredicted RBP4.42□□□□□ -1.7
NUP88-206ENST00000573169 C4orf26Q17RF5 130 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 PKD1P98161 4303 aa4.42□□□□□ -1.7
NUP88-206ENST00000573169 TRBV7-4A0A0J9YYF1 115 aa4.41□□□□□ -1.7
NUP88-206ENST00000573169 SPART-AS1P0CW21 52 aa4.41□□□□□ -1.7
NUP88-206ENST00000573169 Q6ZVQ6 151 aa4.41□□□□□ -1.7
NUP88-206ENST00000573169 C20orf197Q8N268 126 aa4.41□□□□□ -1.7
NUP88-206ENST00000573169 RYR1P21817 5038 aa4.4□□□□□ -1.7
NUP88-206ENST00000573169 PKHD1P08F94 4074 aa4.4□□□□□ -1.7
NUP88-206ENST00000573169 C6orf99Q4VX62 202 aa4.4□□□□□ -1.71
NUP88-206ENST00000573169 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.4□□□□□ -1.71
NUP88-206ENST00000573169 LINC00336Q6ZUF6 198 aa4.4□□□□□ -1.71
NUP88-206ENST00000573169 UBE2DNLQ8IWF7 75 aa4.4□□□□□ -1.71
NUP88-206ENST00000573169 ABCA13Q86UQ4 5058 aa4.4□□□□□ -1.71
NUP88-206ENST00000573169 HRCT1Q6UXD1 115 aa4.39□□□□□ -1.71
NUP88-206ENST00000573169 Q8NDZ9 215 aa4.39□□□□□ -1.71
NUP88-206ENST00000573169 PRO0628Q9UI54 55 aa4.39□□□□□ -1.71
NUP88-206ENST00000573169 PRO0255Q9UI72 69 aa4.39□□□□□ -1.71
NUP88-206ENST00000573169 IGKV3OR2-268A0A0C4DH90 116 aa4.38□□□□□ -1.71
NUP88-206ENST00000573169 A0A1B0GW54 56 aa4.38□□□□□ -1.71
NUP88-206ENST00000573169 PRR3P79522 188 aaKnown RBP4.38□□□□□ -1.71
NUP88-206ENST00000573169 Q6ZR54 194 aa4.38□□□□□ -1.71
NUP88-206ENST00000573169 CHCHD10Q8WYQ3 142 aaPredicted RBP4.38□□□□□ -1.71
NUP88-206ENST00000573169 LYRM9A8MSI8 78 aa4.37□□□□□ -1.71
NUP88-206ENST00000573169 DEFB130BP0DP73 79 aa4.37□□□□□ -1.71
NUP88-206ENST00000573169 DEFB130AP0DP74 79 aa4.37□□□□□ -1.71
NUP88-206ENST00000573169 DAD1P61803 113 aa4.37□□□□□ -1.71
NUP88-206ENST00000573169 FP248Q71RG6 208 aaPredicted RBP4.37□□□□□ -1.71
NUP88-206ENST00000573169 PRR34Q9NV39 138 aa4.36□□□□□ -1.71
NUP88-206ENST00000573169 HSPG2P98160 4391 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms