RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 ST20-AS1Q8NBB2 130 aa10.12□□□□□ -0.79
CHD3-214ENST00000572579 LITAFQ99732 161 aa10.12□□□□□ -0.79
CHD3-214ENST00000572579 E9PLD3 99 aa10.11□□□□□ -0.79
CHD3-214ENST00000572579 TRAV23DV6A0A075B6W5 121 aa10.1□□□□□ -0.79
CHD3-214ENST00000572579 ASB16-AS1Q495Z4 193 aa10.1□□□□□ -0.79
CHD3-214ENST00000572579 S100A7L2Q5SY68 101 aa10.1□□□□□ -0.79
CHD3-214ENST00000572579 ZNF73O43830 326 aaPredicted RBP10.09□□□□□ -0.79
CHD3-214ENST00000572579 S100A12P80511 92 aa10.09□□□□□ -0.79
CHD3-214ENST00000572579 RPS29P62273 56 aaKnown RBP10.08□□□□□ -0.8
CHD3-214ENST00000572579 MIEN1Q9BRT3 115 aa10.08□□□□□ -0.8
CHD3-214ENST00000572579 SYS1-DBNDD2H3BUS1 97 aa10.07□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BKO60814 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BJP06899 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BOP23527 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BBP33778 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BDP58876 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BCP62807 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST2H2BEQ16778 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.05□□□□□ -0.8
CHD3-214ENST00000572579 LINC00308Q8TCZ7 52 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BHQ93079 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BNQ99877 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 HIST1H2BMQ99879 126 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 TTTY13Q9BZ97 58 aa10.05□□□□□ -0.8
CHD3-214ENST00000572579 LINC01545Q5VT33 79 aa10.03□□□□□ -0.8
CHD3-214ENST00000572579 SLC25A20O43772 301 aa10.02□□□□□ -0.81
CHD3-214ENST00000572579 JOSD1Q15040 202 aaPredicted RBP10.02□□□□□ -0.81
CHD3-214ENST00000572579 TIMM17BO60830 172 aa10□□□□□ -0.81
CHD3-214ENST00000572579 SPRR1BP22528 89 aa10□□□□□ -0.81
CHD3-214ENST00000572579 C9orf153Q5TBE3 101 aa10□□□□□ -0.81
CHD3-214ENST00000572579 SPANXCQ9NY87 97 aa10□□□□□ -0.81
CHD3-214ENST00000572579 XP32Q5T750 250 aa9.99□□□□□ -0.81
CHD3-214ENST00000572579 C5orf52A6NGY3 159 aa9.97□□□□□ -0.81
CHD3-214ENST00000572579 PET117Q6UWS5 81 aa9.97□□□□□ -0.81
CHD3-214ENST00000572579 OR13C6PQ8NH95 151 aa9.97□□□□□ -0.81
CHD3-214ENST00000572579 ZNF815PA8K554 130 aa9.96□□□□□ -0.82
CHD3-214ENST00000572579 C3orf79P0CE67 100 aa9.96□□□□□ -0.82
CHD3-214ENST00000572579 SEC61BP60468 96 aaKnown RBP9.96□□□□□ -0.82
CHD3-214ENST00000572579 HRCT1Q6UXD1 115 aa9.94□□□□□ -0.82
CHD3-214ENST00000572579 SPANXDQ9BXN6 97 aa9.94□□□□□ -0.82
CHD3-214ENST00000572579 HINT1P49773 126 aaPredicted RBP9.93□□□□□ -0.82
CHD3-214ENST00000572579 LCE2CQ5TA81 110 aa9.93□□□□□ -0.82
CHD3-214ENST00000572579 ELOF1P60002 83 aaKnown RBP9.92□□□□□ -0.82
CHD3-214ENST00000572579 C6orf99Q4VX62 202 aa9.92□□□□□ -0.82
CHD3-214ENST00000572579 DHRS4-AS1Q9P1J3 65 aa9.92□□□□□ -0.82
CHD3-214ENST00000572579 KRTAP19-2Q3LHN2 52 aa9.91□□□□□ -0.82
CHD3-214ENST00000572579 COA6Q5JTJ3 125 aaKnown RBP9.91□□□□□ -0.82
CHD3-214ENST00000572579 COX7BP24311 80 aa9.9□□□□□ -0.82
CHD3-214ENST00000572579 ANKRD39Q53RE8 183 aa9.9□□□□□ -0.82
CHD3-214ENST00000572579 CBY1Q9Y3M2 126 aa9.9□□□□□ -0.82
CHD3-214ENST00000572579 SMIM29Q86T20 159 aa9.89□□□□□ -0.83
CHD3-214ENST00000572579 KRTAP9-6A0A140TA67 174 aa9.88□□□□□ -0.83
CHD3-214ENST00000572579 LINC01547P58512 204 aaPredicted RBP9.88□□□□□ -0.83
CHD3-214ENST00000572579 KRTDAPP60985 99 aa9.88□□□□□ -0.83
CHD3-214ENST00000572579 LINC00518Q8N0U6 118 aa9.88□□□□□ -0.83
CHD3-214ENST00000572579 DEFB105AQ8NG35 78 aa9.87□□□□□ -0.83
CHD3-214ENST00000572579 A0A0G2JQZ4 141 aa9.86□□□□□ -0.83
CHD3-214ENST00000572579 Q1RN00 199 aa9.86□□□□□ -0.83
CHD3-214ENST00000572579 LAMTOR3Q9UHA4 124 aa9.86□□□□□ -0.83
CHD3-214ENST00000572579 SLC25A34Q6PIV7 304 aa9.84□□□□□ -0.83
CHD3-214ENST00000572579 PCP2Q8IVA1 136 aa9.84□□□□□ -0.83
CHD3-214ENST00000572579 ATOH7Q8N100 152 aa9.84□□□□□ -0.83
CHD3-214ENST00000572579 FSIP2Q5CZC0 6907 aa9.83□□□□□ -0.84
CHD3-214ENST00000572579 C9orf92A6NGG3 77 aa9.83□□□□□ -0.84
CHD3-214ENST00000572579 TAL2Q16559 108 aa9.83□□□□□ -0.84
CHD3-214ENST00000572579 TRBV7-6A0A0J9YX20 115 aa9.82□□□□□ -0.84
CHD3-214ENST00000572579 TEX49A0A1B0GTD5 131 aa9.82□□□□□ -0.84
CHD3-214ENST00000572579 PCOTHQ58A44 107 aa9.82□□□□□ -0.84
CHD3-214ENST00000572579 MUSTN1Q8IVN3 82 aa9.82□□□□□ -0.84
CHD3-214ENST00000572579 H7C2G1 150 aa9.81□□□□□ -0.84
CHD3-214ENST00000572579 SCGB1D4Q6XE38 83 aa9.81□□□□□ -0.84
CHD3-214ENST00000572579 IGLV5-48A0A075B6I7 105 aa9.8□□□□□ -0.84
CHD3-214ENST00000572579 CD164Q04900 197 aa9.8□□□□□ -0.84
CHD3-214ENST00000572579 LIMD2Q9BT23 127 aa9.8□□□□□ -0.84
CHD3-214ENST00000572579 IFITM1P13164 125 aa9.79□□□□□ -0.84
CHD3-214ENST00000572579 PRO1933Q9H354 126 aa9.79□□□□□ -0.84
CHD3-214ENST00000572579 A6NDN8 102 aa9.78□□□□□ -0.84
CHD3-214ENST00000572579 LCE2DQ5TA82 110 aaPredicted RBP9.78□□□□□ -0.84
CHD3-214ENST00000572579 A0A1B0GWB2 263 aa9.77□□□□□ -0.85
CHD3-214ENST00000572579 C1orf195Q5TG92 126 aa9.77□□□□□ -0.85
CHD3-214ENST00000572579 Q5XG85 94 aa9.77□□□□□ -0.85
CHD3-214ENST00000572579 SMIM11BQ8TCY0 68 aa9.76□□□□□ -0.85
CHD3-214ENST00000572579 IGLV8-61A0A075B6I0 122 aa9.75□□□□□ -0.85
CHD3-214ENST00000572579 AKR1D1P51857 326 aa9.75□□□□□ -0.85
CHD3-214ENST00000572579 Q6ZVH6 145 aa9.75□□□□□ -0.85
CHD3-214ENST00000572579 MT1HP80294 61 aa9.74□□□□□ -0.85
CHD3-214ENST00000572579 C20orf202A1L168 122 aa9.73□□□□□ -0.85
CHD3-214ENST00000572579 COPS9Q8WXC6 57 aa9.7□□□□□ -0.86
CHD3-214ENST00000572579 TRAV13-2A0A0B4J235 113 aa9.68□□□□□ -0.86
CHD3-214ENST00000572579 A4D1N5 150 aa9.68□□□□□ -0.86
CHD3-214ENST00000572579 FLGP20930 4061 aaPredicted RBP9.66□□□□□ -0.86
CHD3-214ENST00000572579 LINC00575Q6W349 94 aa9.66□□□□□ -0.86
CHD3-214ENST00000572579 HIST3H2BBQ8N257 126 aa9.65□□□□□ -0.86
CHD3-214ENST00000572579 HIST1H2BLQ99880 126 aa9.65□□□□□ -0.86
CHD3-214ENST00000572579 RPL37P61927 97 aaKnown RBP9.63□□□□□ -0.87
CHD3-214ENST00000572579 SNRPEP62304 92 aaKnown RBP9.63□□□□□ -0.87
CHD3-214ENST00000572579 NHP2Q9NX24 153 aaKnown RBP9.61□□□□□ -0.87
CHD3-214ENST00000572579 LORP23490 312 aaPredicted RBP9.6□□□□□ -0.87
CHD3-214ENST00000572579 Q6ZQY7 126 aa9.59□□□□□ -0.87
CHD3-214ENST00000572579 CRCT1Q9UGL9 99 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 126 ms