RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 LINC00846Q9NV44 126 aa6.49□□□□□ -1.37
VPS53-206ENST00000570359 COX7BP24311 80 aa6.49□□□□□ -1.37
VPS53-206ENST00000570359 Q5XG85 94 aa6.49□□□□□ -1.37
VPS53-206ENST00000570359 TMEM256-PLSCR3K7ERE1 68 aa6.48□□□□□ -1.37
VPS53-206ENST00000570359 M0R378 163 aa6.47□□□□□ -1.37
VPS53-206ENST00000570359 DNAH7Q8WXX0 4024 aa6.47□□□□□ -1.37
VPS53-206ENST00000570359 CYSTM1Q9H1C7 97 aa6.47□□□□□ -1.37
VPS53-206ENST00000570359 M0R2N4 97 aa6.46□□□□□ -1.37
VPS53-206ENST00000570359 OXTP01178 125 aa6.46□□□□□ -1.37
VPS53-206ENST00000570359 C7orf33Q8WU49 177 aa6.46□□□□□ -1.38
VPS53-206ENST00000570359 DNAH9Q9NYC9 4486 aa6.46□□□□□ -1.38
VPS53-206ENST00000570359 OBSCN-AS1Q96MR7 158 aa6.46□□□□□ -1.38
VPS53-206ENST00000570359 A0A087WVE0 104 aa6.45□□□□□ -1.38
VPS53-206ENST00000570359 C4orf26Q17RF5 130 aa6.45□□□□□ -1.38
VPS53-206ENST00000570359 FUSP35637 526 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS53-206ENST00000570359 MUC7Q8TAX7 377 aa6.44□□□□□ -1.38
VPS53-206ENST00000570359 RMI2Q96E14 147 aa6.44□□□□□ -1.38
VPS53-206ENST00000570359 LINC00167Q96N53 147 aa6.44□□□□□ -1.38
VPS53-206ENST00000570359 EPM2AB3EWF7 344 aa6.44□□□□□ -1.38
VPS53-206ENST00000570359 RBM3P98179 157 aaKnown RBP6.44□□□□□ -1.38
VPS53-206ENST00000570359 DSCR8Q96T75 97 aa6.43□□□□□ -1.38
VPS53-206ENST00000570359 JMJD7-PLA2G4BH0Y9G9 81 aa6.43□□□□□ -1.38
VPS53-206ENST00000570359 CCKP06307 115 aa6.43□□□□□ -1.38
VPS53-206ENST00000570359 ELOF1P60002 83 aaKnown RBP6.43□□□□□ -1.38
VPS53-206ENST00000570359 HRCT1Q6UXD1 115 aa6.42□□□□□ -1.38
VPS53-206ENST00000570359 PRKDCP78527 4128 aaKnown RBP6.42□□□□□ -1.38
VPS53-206ENST00000570359 PRO0628Q9UI54 55 aa6.42□□□□□ -1.38
VPS53-206ENST00000570359 TGP01266 2768 aa6.42□□□□□ -1.38
VPS53-206ENST00000570359 CHTF8P0CG12 524 aa6.41□□□□□ -1.38
VPS53-206ENST00000570359 ATP5EP2Q5VTU8 51 aa6.41□□□□□ -1.38
VPS53-206ENST00000570359 MEGF8Q7Z7M0 2845 aa6.41□□□□□ -1.38
VPS53-206ENST00000570359 B9D2Q9BPU9 175 aa6.41□□□□□ -1.38
VPS53-206ENST00000570359 APLNQ9ULZ1 77 aa6.41□□□□□ -1.38
VPS53-206ENST00000570359 SCXQ7RTU7 201 aa6.4□□□□□ -1.38
VPS53-206ENST00000570359 DNAH1Q9P2D7 4330 aa6.4□□□□□ -1.38
VPS53-206ENST00000570359 SRRM2Q9UQ35 2752 aaKnown RBP6.4□□□□□ -1.39
VPS53-206ENST00000570359 A0A096LNI7 61 aa6.4□□□□□ -1.39
VPS53-206ENST00000570359 ETDCA0A1B0GVM5 59 aa6.4□□□□□ -1.39
VPS53-206ENST00000570359 BCE1O60756 84 aa6.4□□□□□ -1.39
VPS53-206ENST00000570359 KRTAP7-1Q8IUC3 87 aa6.4□□□□□ -1.39
VPS53-206ENST00000570359 LINC00528Q8N1L1 170 aa6.4□□□□□ -1.39
VPS53-206ENST00000570359 HAMPP81172 84 aa6.39□□□□□ -1.39
VPS53-206ENST00000570359 UBE2BP63146 152 aa6.39□□□□□ -1.39
VPS53-206ENST00000570359 ST20-AS1Q8NBB2 130 aa6.39□□□□□ -1.39
VPS53-206ENST00000570359 SERP1Q9Y6X1 66 aa6.39□□□□□ -1.39
VPS53-206ENST00000570359 DNHD1Q96M86 4753 aa6.38□□□□□ -1.39
VPS53-206ENST00000570359 PLECQ15149 4684 aaKnown RBP6.38□□□□□ -1.39
VPS53-206ENST00000570359 F8WDY8 70 aa6.38□□□□□ -1.39
VPS53-206ENST00000570359 Q6ZQT0 140 aa6.38□□□□□ -1.39
VPS53-206ENST00000570359 MRPL55Q7Z7F7 128 aaKnown RBP6.38□□□□□ -1.39
VPS53-206ENST00000570359 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.37□□□□□ -1.39
VPS53-206ENST00000570359 FAM19A1Q7Z5A9 133 aa6.37□□□□□ -1.39
VPS53-206ENST00000570359 UBL5Q9BZL1 73 aa6.37□□□□□ -1.39
VPS53-206ENST00000570359 FAM236DA0A1B0GTK5 79 aa6.36□□□□□ -1.39
VPS53-206ENST00000570359 FAM236CP0DP71 79 aa6.36□□□□□ -1.39
VPS53-206ENST00000570359 C3orf84H3BNL1 204 aa6.36□□□□□ -1.39
VPS53-206ENST00000570359 PRLHP81277 87 aa6.36□□□□□ -1.39
VPS53-206ENST00000570359 A0A1W2PNN7 141 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 ERC2-IT1O76042 136 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 Q9BRP9 147 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 KCNQ1DNQ9H478 68 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 STARD9Q9P2P6 4700 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 IGLV1-50A0A075B6I6 118 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 A0A0G2JQZ4 141 aa6.35□□□□□ -1.39
VPS53-206ENST00000570359 GHRHP01286 108 aa6.34□□□□□ -1.39
VPS53-206ENST00000570359 TLX1NBP0CAT3 122 aa6.34□□□□□ -1.39
VPS53-206ENST00000570359 HIGD2AQ9BW72 106 aa6.34□□□□□ -1.4
VPS53-206ENST00000570359 Q6ZRX8 168 aa6.33□□□□□ -1.4
VPS53-206ENST00000570359 PHF5AQ7RTV0 110 aaKnown RBP6.33□□□□□ -1.4
VPS53-206ENST00000570359 NBDYA0A0U1RRE5 68 aa6.33□□□□□ -1.4
VPS53-206ENST00000570359 Q6ZVQ6 151 aa6.32□□□□□ -1.4
VPS53-206ENST00000570359 Q8N377 158 aa6.32□□□□□ -1.4
VPS53-206ENST00000570359 NUPR2A6NF83 97 aa6.32□□□□□ -1.4
VPS53-206ENST00000570359 REG3GQ6UW15 175 aa6.32□□□□□ -1.4
VPS53-206ENST00000570359 LINC00336Q6ZUF6 198 aa6.32□□□□□ -1.4
VPS53-206ENST00000570359 SMIM26A0A096LP01 95 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 TRBV7-6A0A0J9YX20 115 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 H7BZZ5 65 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 KLKP1Q107X0 134 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 Q8N9L7 120 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 TRAV7A0A075B6U4 112 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 LOC110117498A0A087WWA1 95 aa6.31□□□□□ -1.4
VPS53-206ENST00000570359 PRYO14603 147 aa6.3□□□□□ -1.4
VPS53-206ENST00000570359 PANO1I0J062 215 aa6.3□□□□□ -1.4
VPS53-206ENST00000570359 KRTAP11-1Q8IUC1 163 aa6.3□□□□□ -1.4
VPS53-206ENST00000570359 C16orf90A8MZG2 172 aa6.29□□□□□ -1.4
VPS53-206ENST00000570359 C20orf197Q8N268 126 aa6.29□□□□□ -1.4
VPS53-206ENST00000570359 TRBV7-4A0A0J9YYF1 115 aa6.29□□□□□ -1.4
VPS53-206ENST00000570359 ATP5EP56381 51 aaPredicted RBP6.29□□□□□ -1.4
VPS53-206ENST00000570359 LINC01547P58512 204 aaPredicted RBP6.29□□□□□ -1.4
VPS53-206ENST00000570359 KMT2AQ03164 3969 aa6.29□□□□□ -1.4
VPS53-206ENST00000570359 DHRS4-AS1Q9P1J3 65 aa6.29□□□□□ -1.4
VPS53-206ENST00000570359 PLA2G2DQ9UNK4 145 aa6.28□□□□□ -1.4
VPS53-206ENST00000570359 FBN3Q75N90 2809 aa6.28□□□□□ -1.4
VPS53-206ENST00000570359 KRTAP4-16G5E9R7 235 aaPredicted RBP6.28□□□□□ -1.4
VPS53-206ENST00000570359 NDUFC1O43677 76 aa6.28□□□□□ -1.4
VPS53-206ENST00000570359 IGLV5-37A0A075B6J1 123 aa6.27□□□□□ -1.41
VPS53-206ENST00000570359 LRCOL1A6NCL2 159 aa6.26□□□□□ -1.41
VPS53-206ENST00000570359 CNBPP62633 177 aaKnown RBP6.26□□□□□ -1.41
VPS53-206ENST00000570359 LY6G6CO95867 125 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms