RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 Q6ZRP5 223 aa8.92□□□□□ -0.98
CLK3-215ENST00000564353 Q6ZQT0 140 aa8.92□□□□□ -0.98
CLK3-215ENST00000564353 UBL5Q9BZL1 73 aa8.92□□□□□ -0.98
CLK3-215ENST00000564353 KRTAP26-1Q6PEX3 210 aa8.91□□□□□ -0.98
CLK3-215ENST00000564353 DEFB105AQ8NG35 78 aa8.91□□□□□ -0.98
CLK3-215ENST00000564353 LYSTQ99698 3801 aa8.91□□□□□ -0.98
CLK3-215ENST00000564353 VPREB1P12018 145 aa8.9□□□□□ -0.98
CLK3-215ENST00000564353 COX7BP24311 80 aa8.9□□□□□ -0.98
CLK3-215ENST00000564353 EPM2AB3EWF7 344 aa8.9□□□□□ -0.98
CLK3-215ENST00000564353 CASC10Q5T4H9 136 aa8.9□□□□□ -0.98
CLK3-215ENST00000564353 MPLKIPQ8TAP9 179 aa8.9□□□□□ -0.98
CLK3-215ENST00000564353 NDUFC2-KCTD14E9PQ53 114 aa8.9□□□□□ -0.99
CLK3-215ENST00000564353 C11orf45Q8TAV5 145 aa8.89□□□□□ -0.99
CLK3-215ENST00000564353 PMAIP1Q13794 54 aa8.89□□□□□ -0.99
CLK3-215ENST00000564353 RPL37AP8A6NKH3 93 aa8.88□□□□□ -0.99
CLK3-215ENST00000564353 GVQW2A0A096LPI5 108 aaPredicted RBP8.87□□□□□ -0.99
CLK3-215ENST00000564353 H7BZZ5 65 aa8.87□□□□□ -0.99
CLK3-215ENST00000564353 FAM168BA1KXE4 195 aa8.87□□□□□ -0.99
CLK3-215ENST00000564353 SERTAD4-AS1Q5TG53 156 aa8.86□□□□□ -0.99
CLK3-215ENST00000564353 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.86□□□□□ -0.99
CLK3-215ENST00000564353 Q6ZVQ6 151 aa8.86□□□□□ -0.99
CLK3-215ENST00000564353 SNURFQ9Y675 71 aa8.86□□□□□ -0.99
CLK3-215ENST00000564353 LINC01547P58512 204 aaPredicted RBP8.85□□□□□ -0.99
CLK3-215ENST00000564353 EGFEM1PQ0D2K5 195 aa8.85□□□□□ -0.99
CLK3-215ENST00000564353 MUC7Q8TAX7 377 aa8.85□□□□□ -0.99
CLK3-215ENST00000564353 ELOF1P60002 83 aaKnown RBP8.85□□□□□ -0.99
CLK3-215ENST00000564353 Q8N9L7 120 aa8.85□□□□□ -0.99
CLK3-215ENST00000564353 MGAM2Q2M2H8 2515 aa8.84□□□□□ -0.99
CLK3-215ENST00000564353 SYCNQ0VAF6 134 aa8.84□□□□□ -0.99
CLK3-215ENST00000564353 TRBV7-6A0A0J9YX20 115 aa8.83□□□□□ -1
CLK3-215ENST00000564353 M0R378 163 aa8.83□□□□□ -1
CLK3-215ENST00000564353 TRAV10A0A0B4J240 114 aa8.82□□□□□ -1
CLK3-215ENST00000564353 C3orf84H3BNL1 204 aa8.82□□□□□ -1
CLK3-215ENST00000564353 NKAPP1Q8N9T2 125 aa8.81□□□□□ -1
CLK3-215ENST00000564353 RMI2Q96E14 147 aa8.81□□□□□ -1
CLK3-215ENST00000564353 F8WEM9 126 aa8.81□□□□□ -1
CLK3-215ENST00000564353 DNAH10Q8IVF4 4471 aa8.81□□□□□ -1
CLK3-215ENST00000564353 LOC110117498A0A087WWA1 95 aa8.81□□□□□ -1
CLK3-215ENST00000564353 TENM2Q9NT68 2774 aa8.8□□□□□ -1
CLK3-215ENST00000564353 LINC01556Q5JQF7 62 aa8.8□□□□□ -1
CLK3-215ENST00000564353 LINC00528Q8N1L1 170 aa8.8□□□□□ -1
CLK3-215ENST00000564353 C7orf33Q8WU49 177 aa8.8□□□□□ -1
CLK3-215ENST00000564353 LINC00588Q9Y4M8 146 aa8.79□□□□□ -1
CLK3-215ENST00000564353 FAM229BQ4G0N7 80 aa8.79□□□□□ -1
CLK3-215ENST00000564353 H3BNG1 76 aa8.78□□□□□ -1
CLK3-215ENST00000564353 TRBV7-4A0A0J9YYF1 115 aa8.76□□□□□ -1.01
CLK3-215ENST00000564353 ATP5EP2Q5VTU8 51 aa8.76□□□□□ -1.01
CLK3-215ENST00000564353 ST20-AS1Q8NBB2 130 aa8.76□□□□□ -1.01
CLK3-215ENST00000564353 STAB2Q8WWQ8 2551 aa8.76□□□□□ -1.01
CLK3-215ENST00000564353 A0A0G2JQZ4 141 aa8.75□□□□□ -1.01
CLK3-215ENST00000564353 A0A1W2PNN7 141 aa8.75□□□□□ -1.01
CLK3-215ENST00000564353 SRRM2Q9UQ35 2752 aaKnown RBP8.74□□□□□ -1.01
CLK3-215ENST00000564353 DNAH3Q8TD57 4116 aa8.74□□□□□ -1.01
CLK3-215ENST00000564353 CD164Q04900 197 aa8.74□□□□□ -1.01
CLK3-215ENST00000564353 COL7A1Q02388 2944 aa8.74□□□□□ -1.01
CLK3-215ENST00000564353 C4orf48Q5BLP8 95 aa8.74□□□□□ -1.01
CLK3-215ENST00000564353 BPY2O14599 106 aa8.73□□□□□ -1.01
CLK3-215ENST00000564353 HUWE1Q7Z6Z7 4374 aaKnown RBP8.73□□□□□ -1.01
CLK3-215ENST00000564353 KRTAP7-1Q8IUC3 87 aa8.72□□□□□ -1.01
CLK3-215ENST00000564353 Q8N377 158 aa8.72□□□□□ -1.01
CLK3-215ENST00000564353 TM2D3Q9BRN9 247 aa8.72□□□□□ -1.01
CLK3-215ENST00000564353 IGKV2-24A0A0C4DH68 120 aa8.72□□□□□ -1.01
CLK3-215ENST00000564353 DNAH10OSP0CZ25 163 aa8.72□□□□□ -1.01
CLK3-215ENST00000564353 Q9BRP9 147 aa8.71□□□□□ -1.02
CLK3-215ENST00000564353 ERC2-IT1O76042 136 aa8.71□□□□□ -1.02
CLK3-215ENST00000564353 KCNQ1DNQ9H478 68 aa8.69□□□□□ -1.02
CLK3-215ENST00000564353 PDE6GP18545 87 aa8.69□□□□□ -1.02
CLK3-215ENST00000564353 KLKP1Q107X0 134 aa8.69□□□□□ -1.02
CLK3-215ENST00000564353 ETDCA0A1B0GVM5 59 aa8.68□□□□□ -1.02
CLK3-215ENST00000564353 NREPQ16612 68 aa8.68□□□□□ -1.02
CLK3-215ENST00000564353 TRAV7A0A075B6U4 112 aa8.68□□□□□ -1.02
CLK3-215ENST00000564353 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.67□□□□□ -1.02
CLK3-215ENST00000564353 K7EIL1 84 aa8.67□□□□□ -1.02
CLK3-215ENST00000564353 UBE2BP63146 152 aa8.67□□□□□ -1.02
CLK3-215ENST00000564353 MRPL55Q7Z7F7 128 aaKnown RBP8.67□□□□□ -1.02
CLK3-215ENST00000564353 DNAH1Q9P2D7 4330 aa8.67□□□□□ -1.02
CLK3-215ENST00000564353 PRR15Q8IV56 129 aa8.67□□□□□ -1.02
CLK3-215ENST00000564353 DNAH9Q9NYC9 4486 aa8.66□□□□□ -1.02
CLK3-215ENST00000564353 CXCL6P80162 114 aa8.66□□□□□ -1.02
CLK3-215ENST00000564353 Q6ZRX8 168 aa8.66□□□□□ -1.02
CLK3-215ENST00000564353 KRTAP1-5Q9BYS1 174 aa8.66□□□□□ -1.02
CLK3-215ENST00000564353 IGLV1-50A0A075B6I6 118 aa8.65□□□□□ -1.02
CLK3-215ENST00000564353 LRCOL1A6NCL2 159 aa8.64□□□□□ -1.03
CLK3-215ENST00000564353 DNAH7Q8WXX0 4024 aa8.64□□□□□ -1.03
CLK3-215ENST00000564353 PRLHP81277 87 aa8.63□□□□□ -1.03
CLK3-215ENST00000564353 H3BQ85 93 aa8.62□□□□□ -1.03
CLK3-215ENST00000564353 DEFB116Q30KQ4 102 aa8.62□□□□□ -1.03
CLK3-215ENST00000564353 A0A1W2PNM2 257 aa8.62□□□□□ -1.03
CLK3-215ENST00000564353 IGKV4-1P06312 121 aa8.61□□□□□ -1.03
CLK3-215ENST00000564353 C1orf137Q5JT78 98 aa8.61□□□□□ -1.03
CLK3-215ENST00000564353 CHTF8P0CG12 524 aa8.61□□□□□ -1.03
CLK3-215ENST00000564353 KRTAP4-16G5E9R7 235 aaPredicted RBP8.6□□□□□ -1.03
CLK3-215ENST00000564353 PSCAO43653 123 aa8.6□□□□□ -1.03
CLK3-215ENST00000564353 A0A096LNI7 61 aa8.6□□□□□ -1.03
CLK3-215ENST00000564353 HIGD2AQ9BW72 106 aa8.59□□□□□ -1.03
CLK3-215ENST00000564353 RBM12B-AS1Q9P1G2 102 aa8.59□□□□□ -1.03
CLK3-215ENST00000564353 TLX1NBP0CAT3 122 aa8.58□□□□□ -1.04
CLK3-215ENST00000564353 DHRS4-AS1Q9P1J3 65 aa8.58□□□□□ -1.04
CLK3-215ENST00000564353 PSPHP1O15172 72 aa8.58□□□□□ -1.04
CLK3-215ENST00000564353 FUSP35637 526 aaKnown RBP eCLIP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms