RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TRAV23DV6A0A075B6W5 121 aa9.67□□□□□ -0.86
VPS9D1-203ENST00000563798 C5orf52A6NGY3 159 aa9.67□□□□□ -0.86
VPS9D1-203ENST00000563798 ASB16-AS1Q495Z4 193 aa9.67□□□□□ -0.86
VPS9D1-203ENST00000563798 ADAMTSL4-AS1Q5T5F5 129 aa9.67□□□□□ -0.86
VPS9D1-203ENST00000563798 Q8N377 158 aa9.67□□□□□ -0.86
VPS9D1-203ENST00000563798 IGLV9-49A0A0B4J1Y8 123 aa9.66□□□□□ -0.86
VPS9D1-203ENST00000563798 EIF4EBP3O60516 100 aaPredicted RBP9.66□□□□□ -0.86
VPS9D1-203ENST00000563798 ZNF73O43830 326 aaPredicted RBP9.65□□□□□ -0.86
VPS9D1-203ENST00000563798 CBY1Q9Y3M2 126 aa9.64□□□□□ -0.87
VPS9D1-203ENST00000563798 SLC25A20O43772 301 aa9.63□□□□□ -0.87
VPS9D1-203ENST00000563798 SYS1-DBNDD2H3BUS1 97 aa9.62□□□□□ -0.87
VPS9D1-203ENST00000563798 SLC7A5P1Q8MH63 180 aa9.62□□□□□ -0.87
VPS9D1-203ENST00000563798 LITAFQ99732 161 aa9.62□□□□□ -0.87
VPS9D1-203ENST00000563798 TIMM17BO60830 172 aa9.61□□□□□ -0.87
VPS9D1-203ENST00000563798 NPC2P61916 151 aa9.6□□□□□ -0.87
VPS9D1-203ENST00000563798 SPANXCQ9NY87 97 aa9.6□□□□□ -0.87
VPS9D1-203ENST00000563798 SPRR1BP22528 89 aa9.59□□□□□ -0.87
VPS9D1-203ENST00000563798 SEC61BP60468 96 aaKnown RBP9.59□□□□□ -0.87
VPS9D1-203ENST00000563798 LINC00308Q8TCZ7 52 aa9.59□□□□□ -0.87
VPS9D1-203ENST00000563798 HINT1P49773 126 aaPredicted RBP9.58□□□□□ -0.88
VPS9D1-203ENST00000563798 LINC01545Q5VT33 79 aa9.58□□□□□ -0.88
VPS9D1-203ENST00000563798 ST20-AS1Q8NBB2 130 aa9.58□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BKO60814 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BJP06899 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BOP23527 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BBP33778 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BDP58876 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BCP62807 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST2H2BEQ16778 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BHQ93079 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BNQ99877 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 HIST1H2BMQ99879 126 aa9.57□□□□□ -0.88
VPS9D1-203ENST00000563798 XP32Q5T750 250 aa9.56□□□□□ -0.88
VPS9D1-203ENST00000563798 C9orf153Q5TBE3 101 aa9.56□□□□□ -0.88
VPS9D1-203ENST00000563798 PET117Q6UWS5 81 aa9.56□□□□□ -0.88
VPS9D1-203ENST00000563798 SPANXDQ9BXN6 97 aa9.55□□□□□ -0.88
VPS9D1-203ENST00000563798 KRTAP4-1Q9BYQ7 146 aa9.55□□□□□ -0.88
VPS9D1-203ENST00000563798 DHRS4-AS1Q9P1J3 65 aa9.55□□□□□ -0.88
VPS9D1-203ENST00000563798 SLC25A34Q6PIV7 304 aa9.53□□□□□ -0.88
VPS9D1-203ENST00000563798 LINC00518Q8N0U6 118 aa9.52□□□□□ -0.89
VPS9D1-203ENST00000563798 OR13C6PQ8NH95 151 aa9.52□□□□□ -0.89
VPS9D1-203ENST00000563798 ZNF815PA8K554 130 aa9.51□□□□□ -0.89
VPS9D1-203ENST00000563798 ELOF1P60002 83 aaKnown RBP9.5□□□□□ -0.89
VPS9D1-203ENST00000563798 C3orf79P0CE67 100 aa9.48□□□□□ -0.89
VPS9D1-203ENST00000563798 COA6Q5JTJ3 125 aaKnown RBP9.48□□□□□ -0.89
VPS9D1-203ENST00000563798 LIMD2Q9BT23 127 aa9.48□□□□□ -0.89
VPS9D1-203ENST00000563798 TTTY13Q9BZ97 58 aa9.48□□□□□ -0.89
VPS9D1-203ENST00000563798 LAMTOR3Q9UHA4 124 aa9.48□□□□□ -0.89
VPS9D1-203ENST00000563798 TRBV7-6A0A0J9YX20 115 aa9.47□□□□□ -0.89
VPS9D1-203ENST00000563798 COX7BP24311 80 aa9.47□□□□□ -0.89
VPS9D1-203ENST00000563798 LINC01547P58512 204 aaPredicted RBP9.47□□□□□ -0.89
VPS9D1-203ENST00000563798 C6orf99Q4VX62 202 aa9.47□□□□□ -0.89
VPS9D1-203ENST00000563798 CD164Q04900 197 aa9.45□□□□□ -0.9
VPS9D1-203ENST00000563798 TEX49A0A1B0GTD5 131 aa9.42□□□□□ -0.9
VPS9D1-203ENST00000563798 IFITM1P13164 125 aa9.42□□□□□ -0.9
VPS9D1-203ENST00000563798 Q6ZVH6 145 aa9.42□□□□□ -0.9
VPS9D1-203ENST00000563798 COPS9Q8WXC6 57 aa9.42□□□□□ -0.9
VPS9D1-203ENST00000563798 TAL2Q16559 108 aa9.41□□□□□ -0.9
VPS9D1-203ENST00000563798 Q5XG85 94 aa9.41□□□□□ -0.9
VPS9D1-203ENST00000563798 SCGB1D4Q6XE38 83 aa9.41□□□□□ -0.9
VPS9D1-203ENST00000563798 PRO1933Q9H354 126 aa9.41□□□□□ -0.9
VPS9D1-203ENST00000563798 A0A1B0GWB2 263 aa9.4□□□□□ -0.9
VPS9D1-203ENST00000563798 KRTDAPP60985 99 aa9.4□□□□□ -0.9
VPS9D1-203ENST00000563798 HRCT1Q6UXD1 115 aa9.4□□□□□ -0.9
VPS9D1-203ENST00000563798 SMIM29Q86T20 159 aa9.4□□□□□ -0.9
VPS9D1-203ENST00000563798 FSIP2Q5CZC0 6907 aa9.4□□□□□ -0.91
VPS9D1-203ENST00000563798 IGLV5-48A0A075B6I7 105 aa9.39□□□□□ -0.91
VPS9D1-203ENST00000563798 ANKRD39Q53RE8 183 aa9.39□□□□□ -0.91
VPS9D1-203ENST00000563798 C20orf202A1L168 122 aa9.38□□□□□ -0.91
VPS9D1-203ENST00000563798 Q1RN00 199 aa9.38□□□□□ -0.91
VPS9D1-203ENST00000563798 LCE2CQ5TA81 110 aa9.38□□□□□ -0.91
VPS9D1-203ENST00000563798 AKR1D1P51857 326 aa9.37□□□□□ -0.91
VPS9D1-203ENST00000563798 DEFB105AQ8NG35 78 aa9.37□□□□□ -0.91
VPS9D1-203ENST00000563798 A4D1N5 150 aa9.36□□□□□ -0.91
VPS9D1-203ENST00000563798 A6NDN8 102 aa9.35□□□□□ -0.91
VPS9D1-203ENST00000563798 H7C2G1 150 aa9.35□□□□□ -0.91
VPS9D1-203ENST00000563798 KRTAP19-2Q3LHN2 52 aa9.35□□□□□ -0.91
VPS9D1-203ENST00000563798 MUSTN1Q8IVN3 82 aa9.35□□□□□ -0.91
VPS9D1-203ENST00000563798 LCE2DQ5TA82 110 aaPredicted RBP9.34□□□□□ -0.91
VPS9D1-203ENST00000563798 PCP2Q8IVA1 136 aa9.34□□□□□ -0.91
VPS9D1-203ENST00000563798 PCOTHQ58A44 107 aa9.33□□□□□ -0.92
VPS9D1-203ENST00000563798 C9orf92A6NGG3 77 aa9.32□□□□□ -0.92
VPS9D1-203ENST00000563798 SNRPEP62304 92 aaKnown RBP9.32□□□□□ -0.92
VPS9D1-203ENST00000563798 TRAV13-2A0A0B4J235 113 aa9.31□□□□□ -0.92
VPS9D1-203ENST00000563798 C1orf195Q5TG92 126 aa9.31□□□□□ -0.92
VPS9D1-203ENST00000563798 ATOH7Q8N100 152 aa9.31□□□□□ -0.92
VPS9D1-203ENST00000563798 NHP2Q9NX24 153 aaKnown RBP9.31□□□□□ -0.92
VPS9D1-203ENST00000563798 IGLV8-61A0A075B6I0 122 aa9.29□□□□□ -0.92
VPS9D1-203ENST00000563798 SMIM11BQ8TCY0 68 aa9.29□□□□□ -0.92
VPS9D1-203ENST00000563798 CRCT1Q9UGL9 99 aa9.29□□□□□ -0.92
VPS9D1-203ENST00000563798 A0A0G2JQZ4 141 aa9.25□□□□□ -0.93
VPS9D1-203ENST00000563798 MT1HP80294 61 aa9.25□□□□□ -0.93
VPS9D1-203ENST00000563798 VAMP3Q15836 100 aa9.23□□□□□ -0.93
VPS9D1-203ENST00000563798 TCL1BO95988 128 aa9.22□□□□□ -0.93
VPS9D1-203ENST00000563798 RPL37P61927 97 aaKnown RBP9.22□□□□□ -0.93
VPS9D1-203ENST00000563798 LINC00575Q6W349 94 aa9.22□□□□□ -0.93
VPS9D1-203ENST00000563798 HIST3H2BBQ8N257 126 aa9.19□□□□□ -0.94
VPS9D1-203ENST00000563798 HIST1H2BLQ99880 126 aa9.19□□□□□ -0.94
VPS9D1-203ENST00000563798 F8WEM9 126 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms