RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 LINC00337Q8N6G1 96 aa8.85□□□□□ -0.99
LDLR-213ENST00000560502 NAA38Q9BRA0 125 aaKnown RBP8.85□□□□□ -0.99
LDLR-213ENST00000560502 TMEM126AQ9H061 195 aa8.85□□□□□ -0.99
LDLR-213ENST00000560502 Q6ZRP5 223 aa8.84□□□□□ -0.99
LDLR-213ENST00000560502 H7C2G1 150 aa8.83□□□□□ -1
LDLR-213ENST00000560502 RPL28P46779 137 aaKnown RBP8.83□□□□□ -1
LDLR-213ENST00000560502 RPL18AQ02543 176 aaKnown RBP8.83□□□□□ -1
LDLR-213ENST00000560502 TRIAP1O43715 76 aa8.82□□□□□ -1
LDLR-213ENST00000560502 SCGB1C2P0DMR2 95 aa8.82□□□□□ -1
LDLR-213ENST00000560502 VPREB1P12018 145 aa8.82□□□□□ -1
LDLR-213ENST00000560502 XAGE1AQ9HD64 81 aa8.82□□□□□ -1
LDLR-213ENST00000560502 TNXBP22105 4242 aa8.81□□□□□ -1
LDLR-213ENST00000560502 GAGE2EQ4V326 116 aa8.81□□□□□ -1
LDLR-213ENST00000560502 OR13C6PQ8NH95 151 aa8.81□□□□□ -1
LDLR-213ENST00000560502 GAGE2DQ9UEU5 116 aa8.81□□□□□ -1
LDLR-213ENST00000560502 IGLV5-37A0A075B6J1 123 aa8.8□□□□□ -1
LDLR-213ENST00000560502 M0R378 163 aa8.8□□□□□ -1
LDLR-213ENST00000560502 S100A7L2Q5SY68 101 aa8.8□□□□□ -1
LDLR-213ENST00000560502 NCR3O14931 201 aa8.79□□□□□ -1
LDLR-213ENST00000560502 IGLV6-57P01721 117 aa8.79□□□□□ -1
LDLR-213ENST00000560502 C9orf129Q5T035 196 aaKnown RBP8.79□□□□□ -1
LDLR-213ENST00000560502 SPACA4Q8TDM5 124 aa8.79□□□□□ -1
LDLR-213ENST00000560502 A0A087WYN8 130 aa8.78□□□□□ -1
LDLR-213ENST00000560502 H0YGX0 51 aa8.78□□□□□ -1
LDLR-213ENST00000560502 CHTF8P0CG12 524 aa8.78□□□□□ -1
LDLR-213ENST00000560502 ATXN8Q156A1 80 aa8.78□□□□□ -1
LDLR-213ENST00000560502 Q8NDZ9 215 aa8.78□□□□□ -1
LDLR-213ENST00000560502 SMIM11BQ8TCY0 68 aa8.78□□□□□ -1
LDLR-213ENST00000560502 LINC00474Q9P2X8 69 aa8.78□□□□□ -1
LDLR-213ENST00000560502 LRP2P98164 4655 aa8.78□□□□□ -1
LDLR-213ENST00000560502 NKAPP1Q8N9T2 125 aa8.77□□□□□ -1.01
LDLR-213ENST00000560502 PLAC8Q9NZF1 115 aa8.77□□□□□ -1.01
LDLR-213ENST00000560502 TCL1BO95988 128 aa8.76□□□□□ -1.01
LDLR-213ENST00000560502 GAGE2BQ13066 116 aa8.76□□□□□ -1.01
LDLR-213ENST00000560502 PRR3P79522 188 aaKnown RBP8.75□□□□□ -1.01
LDLR-213ENST00000560502 A0A1B0GX51 115 aa8.74□□□□□ -1.01
LDLR-213ENST00000560502 F8W1H4 67 aa8.74□□□□□ -1.01
LDLR-213ENST00000560502 LST1O00453 97 aa8.74□□□□□ -1.01
LDLR-213ENST00000560502 TRAV23DV6A0A075B6W5 121 aa8.73□□□□□ -1.01
LDLR-213ENST00000560502 TRBV7-6A0A0J9YX20 115 aa8.73□□□□□ -1.01
LDLR-213ENST00000560502 H3BMG7 143 aa8.73□□□□□ -1.01
LDLR-213ENST00000560502 TRACP01848 142 aa8.73□□□□□ -1.01
LDLR-213ENST00000560502 RNF213Q63HN8 5207 aa8.72□□□□□ -1.01
LDLR-213ENST00000560502 A0A096LNI7 61 aa8.72□□□□□ -1.01
LDLR-213ENST00000560502 TRBV10-3A0A0K0K1G6 114 aa8.72□□□□□ -1.01
LDLR-213ENST00000560502 M0QXV9 152 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 SNCGO76070 127 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 C7orf33Q8WU49 177 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 DIRC1Q969H9 104 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 DPH3Q96FX2 82 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 LINC01600Q96MT4 127 aa8.71□□□□□ -1.02
LDLR-213ENST00000560502 PRYO14603 147 aa8.69□□□□□ -1.02
LDLR-213ENST00000560502 C6orf99Q4VX62 202 aa8.69□□□□□ -1.02
LDLR-213ENST00000560502 MRPL55Q7Z7F7 128 aaKnown RBP8.69□□□□□ -1.02
LDLR-213ENST00000560502 CLEC2BQ92478 149 aa8.69□□□□□ -1.02
LDLR-213ENST00000560502 KCNQ1DNQ9H478 68 aa8.69□□□□□ -1.02
LDLR-213ENST00000560502 H3BT86 120 aa8.68□□□□□ -1.02
LDLR-213ENST00000560502 ZNF73O43830 326 aaPredicted RBP8.68□□□□□ -1.02
LDLR-213ENST00000560502 PRO0461Q9UI25 63 aa8.68□□□□□ -1.02
LDLR-213ENST00000560502 C22orf24Q9Y442 160 aa8.68□□□□□ -1.02
LDLR-213ENST00000560502 IGKV2-24A0A0C4DH68 120 aa8.67□□□□□ -1.02
LDLR-213ENST00000560502 FAM19A5Q7Z5A7 132 aaPredicted RBP8.67□□□□□ -1.02
LDLR-213ENST00000560502 IGLV1-50A0A075B6I6 118 aa8.66□□□□□ -1.02
LDLR-213ENST00000560502 FAM168BA1KXE4 195 aa8.66□□□□□ -1.02
LDLR-213ENST00000560502 C9JAW5 83 aa8.66□□□□□ -1.02
LDLR-213ENST00000560502 DNAL4O96015 105 aa8.66□□□□□ -1.02
LDLR-213ENST00000560502 SLC25A20O43772 301 aa8.65□□□□□ -1.02
LDLR-213ENST00000560502 ELOF1P60002 83 aaKnown RBP8.65□□□□□ -1.02
LDLR-213ENST00000560502 KRTAP7-1Q8IUC3 87 aa8.65□□□□□ -1.02
LDLR-213ENST00000560502 H3BQ85 93 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 COX7BP24311 80 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 KRTAP10-8P60410 259 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 LINC00575Q6W349 94 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 FAM218AQ96MZ4 157 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 LINC00167Q96N53 147 aa8.64□□□□□ -1.03
LDLR-213ENST00000560502 GHRHP01286 108 aa8.63□□□□□ -1.03
LDLR-213ENST00000560502 SPRR1AP35321 89 aa8.63□□□□□ -1.03
LDLR-213ENST00000560502 ANKRD29Q8N6D5 301 aa8.63□□□□□ -1.03
LDLR-213ENST00000560502 A0A1W2PNN7 141 aa8.62□□□□□ -1.03
LDLR-213ENST00000560502 SPINK6Q6UWN8 80 aa8.62□□□□□ -1.03
LDLR-213ENST00000560502 hADV29S1A0JD25 119 aa8.6□□□□□ -1.03
LDLR-213ENST00000560502 SMCPP49901 116 aaPredicted RBP8.6□□□□□ -1.03
LDLR-213ENST00000560502 KRTAP4-16G5E9R7 235 aaPredicted RBP8.59□□□□□ -1.03
LDLR-213ENST00000560502 OCIAD2Q56VL3 154 aa8.59□□□□□ -1.03
LDLR-213ENST00000560502 REG3GQ6UW15 175 aa8.59□□□□□ -1.03
LDLR-213ENST00000560502 TEN1Q86WV5 123 aa8.59□□□□□ -1.03
LDLR-213ENST00000560502 ORMDL1Q9P0S3 153 aa8.59□□□□□ -1.03
LDLR-213ENST00000560502 ETDCA0A1B0GVM5 59 aa8.58□□□□□ -1.04
LDLR-213ENST00000560502 RPL37AP8A6NKH3 93 aa8.58□□□□□ -1.04
LDLR-213ENST00000560502 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.58□□□□□ -1.04
LDLR-213ENST00000560502 Q6ZRX8 168 aa8.58□□□□□ -1.04
LDLR-213ENST00000560502 MTURNQ8N3F0 131 aa8.58□□□□□ -1.04
LDLR-213ENST00000560502 DHRS4-AS1Q9P1J3 65 aa8.58□□□□□ -1.04
LDLR-213ENST00000560502 BAALC-AS2P0C853 105 aa8.56□□□□□ -1.04
LDLR-213ENST00000560502 UBE2BP63146 152 aa8.56□□□□□ -1.04
LDLR-213ENST00000560502 B5MCH6 92 aa8.55□□□□□ -1.04
LDLR-213ENST00000560502 TMEM256-PLSCR3K7ERE1 68 aa8.55□□□□□ -1.04
LDLR-213ENST00000560502 ETDBQ3ZM63 59 aa8.55□□□□□ -1.04
LDLR-213ENST00000560502 H0Y9J4 135 aa8.54□□□□□ -1.04
LDLR-213ENST00000560502 J3QR89 54 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms