RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 HSBP1O75506 76 aa6.53□□□□□ -1.36
USP3-214ENST00000559718 NDUFA5Q16718 116 aa6.53□□□□□ -1.36
USP3-214ENST00000559718 Q9BRP9 147 aa6.53□□□□□ -1.36
USP3-214ENST00000559718 KRTAP4-1Q9BYQ7 146 aa6.53□□□□□ -1.36
USP3-214ENST00000559718 DDTP30046 118 aa6.52□□□□□ -1.37
USP3-214ENST00000559718 ASB16-AS1Q495Z4 193 aa6.52□□□□□ -1.37
USP3-214ENST00000559718 MAP1LC3CQ9BXW4 147 aa6.52□□□□□ -1.37
USP3-214ENST00000559718 LOC107984156A0A0G2JMH3 177 aa6.51□□□□□ -1.37
USP3-214ENST00000559718 C9orf118A6NHY6 69 aa6.51□□□□□ -1.37
USP3-214ENST00000559718 LEPROTO15243 131 aa6.51□□□□□ -1.37
USP3-214ENST00000559718 ARL17AQ8IVW1 177 aa6.51□□□□□ -1.37
USP3-214ENST00000559718 Q8N377 158 aa6.5□□□□□ -1.37
USP3-214ENST00000559718 PMCHL2Q9BQD1 86 aa6.5□□□□□ -1.37
USP3-214ENST00000559718 TRBV10-2A0A0K0K1G8 114 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 J3QQQ9 107 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 SERF1AO75920 110 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 LEPROTL1O95214 131 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 TRGC2P03986 189 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 S100A12P80511 92 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 Q6ZRX8 168 aa6.49□□□□□ -1.37
USP3-214ENST00000559718 SSBP3-AS1Q7Z2R9 100 aa6.48□□□□□ -1.37
USP3-214ENST00000559718 SPANXB1Q9NS25 103 aaPredicted RBP6.48□□□□□ -1.37
USP3-214ENST00000559718 IGLV6-57P01721 117 aa6.47□□□□□ -1.37
USP3-214ENST00000559718 PLNP26678 52 aa6.47□□□□□ -1.37
USP3-214ENST00000559718 KRTAP5-3Q6L8H2 238 aa6.47□□□□□ -1.37
USP3-214ENST00000559718 SOSTDC1Q6X4U4 206 aa6.47□□□□□ -1.37
USP3-214ENST00000559718 DPM2O94777 84 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 FABP4P15090 132 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 LGALS3P17931 250 aaKnown RBP6.46□□□□□ -1.38
USP3-214ENST00000559718 SEC61BP60468 96 aaKnown RBP6.46□□□□□ -1.38
USP3-214ENST00000559718 NPC2P61916 151 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 RPS29P62273 56 aaKnown RBP6.46□□□□□ -1.38
USP3-214ENST00000559718 S100A7L2Q5SY68 101 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 ST20-AS1Q8NBB2 130 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 MIEN1Q9BRT3 115 aa6.46□□□□□ -1.38
USP3-214ENST00000559718 TRAV23DV6A0A075B6W5 121 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 SLC25A20O43772 301 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 NDUFC2O95298 119 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 HERVK_113P61574 105 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 ADAMTSL4-AS1Q5T5F5 129 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 C9orf153Q5TBE3 101 aa6.45□□□□□ -1.38
USP3-214ENST00000559718 IGKCP01834 107 aa6.44□□□□□ -1.38
USP3-214ENST00000559718 NMUP48645 174 aa6.44□□□□□ -1.38
USP3-214ENST00000559718 LINC01547P58512 204 aaPredicted RBP6.44□□□□□ -1.38
USP3-214ENST00000559718 HSPB8Q9UJY1 196 aa6.44□□□□□ -1.38
USP3-214ENST00000559718 A0A0J9YXY3 114 aa6.43□□□□□ -1.38
USP3-214ENST00000559718 ZNF73O43830 326 aaPredicted RBP6.43□□□□□ -1.38
USP3-214ENST00000559718 JOSD1Q15040 202 aaPredicted RBP6.42□□□□□ -1.38
USP3-214ENST00000559718 E9PLD3 99 aa6.39□□□□□ -1.39
USP3-214ENST00000559718 HRCT1Q6UXD1 115 aa6.39□□□□□ -1.39
USP3-214ENST00000559718 LITAFQ99732 161 aa6.39□□□□□ -1.39
USP3-214ENST00000559718 COLCA2A8K830 154 aa6.37□□□□□ -1.39
USP3-214ENST00000559718 OR13C6PQ8NH95 151 aa6.37□□□□□ -1.39
USP3-214ENST00000559718 LINC00308Q8TCZ7 52 aa6.37□□□□□ -1.39
USP3-214ENST00000559718 C5orf52A6NGY3 159 aa6.36□□□□□ -1.39
USP3-214ENST00000559718 SPRR1BP22528 89 aa6.36□□□□□ -1.39
USP3-214ENST00000559718 HINT1P49773 126 aaPredicted RBP6.36□□□□□ -1.39
USP3-214ENST00000559718 KRTAP19-2Q3LHN2 52 aa6.36□□□□□ -1.39
USP3-214ENST00000559718 TTTY13Q9BZ97 58 aa6.35□□□□□ -1.39
USP3-214ENST00000559718 SPANXCQ9NY87 97 aa6.35□□□□□ -1.39
USP3-214ENST00000559718 C9orf92A6NGG3 77 aa6.34□□□□□ -1.39
USP3-214ENST00000559718 SYS1-DBNDD2H3BUS1 97 aa6.34□□□□□ -1.39
USP3-214ENST00000559718 PCOTHQ58A44 107 aa6.34□□□□□ -1.39
USP3-214ENST00000559718 SLC7A5P1Q8MH63 180 aa6.34□□□□□ -1.39
USP3-214ENST00000559718 CBY1Q9Y3M2 126 aa6.34□□□□□ -1.39
USP3-214ENST00000559718 TIMM17BO60830 172 aa6.33□□□□□ -1.4
USP3-214ENST00000559718 DHRS4-AS1Q9P1J3 65 aa6.33□□□□□ -1.4
USP3-214ENST00000559718 ZNF815PA8K554 130 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 ELOF1P60002 83 aaKnown RBP6.32□□□□□ -1.4
USP3-214ENST00000559718 Q1RN00 199 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 C6orf99Q4VX62 202 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 SLC25A34Q6PIV7 304 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 DEFB105AQ8NG35 78 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 LIMD2Q9BT23 127 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 SPANXDQ9BXN6 97 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 LAMTOR3Q9UHA4 124 aa6.32□□□□□ -1.4
USP3-214ENST00000559718 FSIP2Q5CZC0 6907 aa6.31□□□□□ -1.4
USP3-214ENST00000559718 COX7BP24311 80 aa6.31□□□□□ -1.4
USP3-214ENST00000559718 LINC01545Q5VT33 79 aa6.31□□□□□ -1.4
USP3-214ENST00000559718 IGLV8-61A0A075B6I0 122 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BKO60814 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BJP06899 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BOP23527 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BBP33778 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BDP58876 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BCP62807 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 MT1HP80294 61 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 TAL2Q16559 108 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST2H2BEQ16778 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BHQ93079 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BNQ99877 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 HIST1H2BMQ99879 126 aa6.3□□□□□ -1.4
USP3-214ENST00000559718 A0A0G2JQZ4 141 aa6.29□□□□□ -1.4
USP3-214ENST00000559718 H7C2G1 150 aa6.29□□□□□ -1.4
USP3-214ENST00000559718 PET117Q6UWS5 81 aa6.28□□□□□ -1.4
USP3-214ENST00000559718 LINC00518Q8N0U6 118 aa6.28□□□□□ -1.4
USP3-214ENST00000559718 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
USP3-214ENST00000559718 TEX49A0A1B0GTD5 131 aa6.27□□□□□ -1.41
USP3-214ENST00000559718 CD164Q04900 197 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms