RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FAM19A5Q7Z5A7 132 aaPredicted RBP8.08□□□□□ -1.12
USP3-213ENST00000559711 MRPL55Q7Z7F7 128 aaKnown RBP8.08□□□□□ -1.12
USP3-213ENST00000559711 ORMDL1Q9P0S3 153 aa8.08□□□□□ -1.12
USP3-213ENST00000559711 DNAH6Q9C0G6 4158 aa8.08□□□□□ -1.12
USP3-213ENST00000559711 IGKV2-24A0A0C4DH68 120 aa8.08□□□□□ -1.12
USP3-213ENST00000559711 A0A1W2PNN7 141 aa8.07□□□□□ -1.12
USP3-213ENST00000559711 ALMS1Q8TCU4 4167 aa8.06□□□□□ -1.12
USP3-213ENST00000559711 PRYO14603 147 aa8.06□□□□□ -1.12
USP3-213ENST00000559711 LINC00528Q8N1L1 170 aa8.06□□□□□ -1.12
USP3-213ENST00000559711 RPL37AP8A6NKH3 93 aa8.05□□□□□ -1.12
USP3-213ENST00000559711 SPRR1AP35321 89 aa8.05□□□□□ -1.12
USP3-213ENST00000559711 LINC00474Q9P2X8 69 aa8.05□□□□□ -1.12
USP3-213ENST00000559711 KRTAP4-16G5E9R7 235 aaPredicted RBP8.05□□□□□ -1.12
USP3-213ENST00000559711 TMEM256-PLSCR3K7ERE1 68 aa8.04□□□□□ -1.12
USP3-213ENST00000559711 CHTF8P0CG12 524 aa8.04□□□□□ -1.12
USP3-213ENST00000559711 INAFM2P0DMQ5 153 aa8.03□□□□□ -1.12
USP3-213ENST00000559711 OBSCN-AS1Q96MR7 158 aa8.03□□□□□ -1.12
USP3-213ENST00000559711 DNAH17Q9UFH2 4485 aa8.02□□□□□ -1.12
USP3-213ENST00000559711 H3BQ85 93 aa8.02□□□□□ -1.13
USP3-213ENST00000559711 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.02□□□□□ -1.13
USP3-213ENST00000559711 Q6ZQY7 126 aa8.02□□□□□ -1.13
USP3-213ENST00000559711 EPM2AB3EWF7 344 aa8.01□□□□□ -1.13
USP3-213ENST00000559711 B5MCH6 92 aa8.01□□□□□ -1.13
USP3-213ENST00000559711 RTL8CO15255 209 aa8.01□□□□□ -1.13
USP3-213ENST00000559711 KRTAP3-3Q9BYR6 98 aa8.01□□□□□ -1.13
USP3-213ENST00000559711 KRTAP3-2Q9BYR7 98 aa8.01□□□□□ -1.13
USP3-213ENST00000559711 PANO1I0J062 215 aa8□□□□□ -1.13
USP3-213ENST00000559711 Q6ZRX8 168 aa8□□□□□ -1.13
USP3-213ENST00000559711 VPS25Q9BRG1 176 aa8□□□□□ -1.13
USP3-213ENST00000559711 HECTD4Q9Y4D8 3996 aa8□□□□□ -1.13
USP3-213ENST00000559711 ETDCA0A1B0GVM5 59 aa7.99□□□□□ -1.13
USP3-213ENST00000559711 REG3GQ6UW15 175 aa7.99□□□□□ -1.13
USP3-213ENST00000559711 SPACA4Q8TDM5 124 aa7.99□□□□□ -1.13
USP3-213ENST00000559711 GHRHP01286 108 aa7.98□□□□□ -1.13
USP3-213ENST00000559711 TNP2Q05952 138 aa7.98□□□□□ -1.13
USP3-213ENST00000559711 DHRS4-AS1Q9P1J3 65 aa7.98□□□□□ -1.13
USP3-213ENST00000559711 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
USP3-213ENST00000559711 IGLV5-52A0A0A0MRZ9 124 aa7.97□□□□□ -1.13
USP3-213ENST00000559711 JMJD7-PLA2G4BH0Y9G9 81 aa7.97□□□□□ -1.13
USP3-213ENST00000559711 PHF5AQ7RTV0 110 aaKnown RBP7.97□□□□□ -1.13
USP3-213ENST00000559711 Q9BRP9 147 aa7.97□□□□□ -1.13
USP3-213ENST00000559711 FAM240AA0A1B0GVK7 77 aa7.96□□□□□ -1.13
USP3-213ENST00000559711 FUSP35637 526 aaKnown RBP eCLIP7.96□□□□□ -1.13
USP3-213ENST00000559711 CDIP1Q9H305 208 aa7.96□□□□□ -1.13
USP3-213ENST00000559711 DPH3Q96FX2 82 aa7.95□□□□□ -1.14
USP3-213ENST00000559711 KRTAP11-1Q8IUC1 163 aa7.94□□□□□ -1.14
USP3-213ENST00000559711 C14orf132Q9NPU4 83 aa7.94□□□□□ -1.14
USP3-213ENST00000559711 UBE2BP63146 152 aa7.93□□□□□ -1.14
USP3-213ENST00000559711 ACYP1P07311 99 aa7.92□□□□□ -1.14
USP3-213ENST00000559711 DNAH11Q96DT5 4516 aa7.92□□□□□ -1.14
USP3-213ENST00000559711 PLAC8Q9NZF1 115 aa7.92□□□□□ -1.14
USP3-213ENST00000559711 LAMTOR3Q9UHA4 124 aa7.92□□□□□ -1.14
USP3-213ENST00000559711 FRAS1Q86XX4 4008 aa7.92□□□□□ -1.14
USP3-213ENST00000559711 LINC01547P58512 204 aaPredicted RBP7.91□□□□□ -1.14
USP3-213ENST00000559711 RBM3P98179 157 aaKnown RBP7.91□□□□□ -1.14
USP3-213ENST00000559711 FAM19A1Q7Z5A9 133 aa7.91□□□□□ -1.14
USP3-213ENST00000559711 SMCR5Q8TEV8 140 aa7.91□□□□□ -1.14
USP3-213ENST00000559711 H0Y9J4 135 aa7.9□□□□□ -1.14
USP3-213ENST00000559711 ERC2-IT1O76042 136 aa7.9□□□□□ -1.14
USP3-213ENST00000559711 KRTAP10-2P60368 255 aa7.9□□□□□ -1.14
USP3-213ENST00000559711 Q8N377 158 aa7.9□□□□□ -1.14
USP3-213ENST00000559711 IGLV5-48A0A075B6I7 105 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 A0A1B0GV72 72 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 NDUFV3P56181 108 aaKnown RBP7.89□□□□□ -1.15
USP3-213ENST00000559711 GAGE2AQ6NT46 116 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 SACSQ9NZJ4 4579 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 LCE6AA0A183 80 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 CCKP06307 115 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 FAT2Q9NYQ8 4349 aa7.89□□□□□ -1.15
USP3-213ENST00000559711 LOC110117498A0A087WWA1 95 aa7.88□□□□□ -1.15
USP3-213ENST00000559711 PRLHP81277 87 aa7.88□□□□□ -1.15
USP3-213ENST00000559711 SIGMAR1Q99720 223 aa7.88□□□□□ -1.15
USP3-213ENST00000559711 BCE1O60756 84 aa7.87□□□□□ -1.15
USP3-213ENST00000559711 ST20-AS1Q8NBB2 130 aa7.87□□□□□ -1.15
USP3-213ENST00000559711 DEFB105AQ8NG35 78 aa7.87□□□□□ -1.15
USP3-213ENST00000559711 PDE6GP18545 87 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 Q6ZQT0 140 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 HYDINQ4G0P3 5121 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 TRBV7-4A0A0J9YYF1 115 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 XGP55808 180 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 DSCR8Q96T75 97 aa7.86□□□□□ -1.15
USP3-213ENST00000559711 DNAH5Q8TE73 4624 aa7.85□□□□□ -1.15
USP3-213ENST00000559711 KRTAP13-1Q8IUC0 172 aa7.85□□□□□ -1.15
USP3-213ENST00000559711 HIGD2AQ9BW72 106 aa7.84□□□□□ -1.15
USP3-213ENST00000559711 PKD1P98161 4303 aa7.84□□□□□ -1.16
USP3-213ENST00000559711 UBE2AP49459 152 aa7.83□□□□□ -1.16
USP3-213ENST00000559711 MT-ATP8P03928 68 aa7.83□□□□□ -1.16
USP3-213ENST00000559711 FAM30AQ9NZY2 134 aa7.83□□□□□ -1.16
USP3-213ENST00000559711 DNAH8Q96JB1 4490 aa7.82□□□□□ -1.16
USP3-213ENST00000559711 C21orf62-AS1Q17RA5 79 aa7.82□□□□□ -1.16
USP3-213ENST00000559711 Q6ZSA8 131 aa7.82□□□□□ -1.16
USP3-213ENST00000559711 KRTAP10-1P60331 282 aa7.81□□□□□ -1.16
USP3-213ENST00000559711 LINC00846Q9NV44 126 aa7.81□□□□□ -1.16
USP3-213ENST00000559711 PSORS1C2Q9UIG4 136 aa7.81□□□□□ -1.16
USP3-213ENST00000559711 LINC00336Q6ZUF6 198 aa7.8□□□□□ -1.16
USP3-213ENST00000559711 SMIM29Q86T20 159 aa7.8□□□□□ -1.16
USP3-213ENST00000559711 C3orf22Q8N5N4 141 aa7.8□□□□□ -1.16
USP3-213ENST00000559711 LINC00643Q86TS7 51 aa7.79□□□□□ -1.16
USP3-213ENST00000559711 CIRBP-AS1Q8TBR5 109 aa7.79□□□□□ -1.16
USP3-213ENST00000559711 SPRR1BP22528 89 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms