RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 LRRC37A2A6NM11 1700 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 C1orf167Q5SNV9 1468 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 FYCO1Q9BQS8 1478 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 NLRP1Q9C000 1473 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 AKAP6Q13023 2319 aa0.09□□□□□ -2.39
USP3-209ENST00000558925 HRNRQ86YZ3 2850 aaPredicted RBP0.09□□□□□ -2.39
USP3-209ENST00000558925 CLASP1Q7Z460 1538 aa0.09□□□□□ -2.39
USP3-209ENST00000558925 ARHGEF12Q9NZN5 1544 aa0.09□□□□□ -2.39
USP3-209ENST00000558925 LINC00959A0A1B0GUT2 108 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 A0A1B0GWA3 101 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 ATOX1O00244 68 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 PIN1P1O15428 100 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 MGPP08493 103 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 SAA2P0DJI9 122 aaPredicted RBP0.09□□□□□ -2.4
USP3-209ENST00000558925 SPRR2EP22531 72 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 SPRR2DP22532 72 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 SPRR2BP35325 72 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 SPRR2AP35326 72 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 GNG2P59768 71 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 COX17Q14061 63 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 PMCHL1Q16048 86 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 PYY3Q5JQD4 70 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 PSMG4Q5JS54 123 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 DEFB107AQ8IZN7 70 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 TMEM263Q8WUH6 116 aaKnown RBP0.09□□□□□ -2.4
USP3-209ENST00000558925 CNFNQ9BYD5 112 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 Q9H521 79 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 TP53AIP1Q9HCN2 124 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 LINC00846Q9NV44 126 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 V9GYS6 101 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 TROQ12816 1431 aaPredicted RBP0.09□□□□□ -2.4
USP3-209ENST00000558925 POLA1P09884 1462 aaPredicted RBP0.09□□□□□ -2.4
USP3-209ENST00000558925 PAPPAQ13219 1627 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 TARBP1Q13395 1621 aaKnown RBP0.09□□□□□ -2.4
USP3-209ENST00000558925 PPLO60437 1756 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 CSMD3Q7Z407 3707 aa0.09□□□□□ -2.4
USP3-209ENST00000558925 VPS13CQ709C8 3753 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 CLTCQ00610 1675 aaKnown RBP0.08□□□□□ -2.4
USP3-209ENST00000558925 ZNF831Q5JPB2 1677 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 NEXMIFQ5QGS0 1516 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 RGPD1P0DJD0 1748 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 XRN1Q8IZH2 1706 aaKnown RBP0.08□□□□□ -2.4
USP3-209ENST00000558925 CRYBG1Q9Y4K1 1723 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 EDC4Q6P2E9 1401 aaKnown RBP0.08□□□□□ -2.4
USP3-209ENST00000558925 UQCRHLA0A096LP55 91 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 TRBV6-1A0A0K0K1D8 114 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 A0A1B0GU69 56 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 K7EP34 96 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 NDUFC1O43677 76 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 UQCRHP07919 91 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 ARMS2P0C7Q2 107 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 IGLC3P0DOY3 106 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 WFDC2Q14508 124 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 ETDBQ3ZM63 59 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 ALKAL2Q6UX46 152 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 S100A16Q96FQ6 103 aaKnown RBP0.08□□□□□ -2.4
USP3-209ENST00000558925 PRO0255Q9UI72 69 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 TMEM131LA2VDJ0 1609 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 BIVM-ERCC5R4GMW8 1640 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 TSC2P49815 1807 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 C5P01031 1676 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 SHPRHQ149N8 1683 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 EPRSP07814 1512 aaKnown RBP0.08□□□□□ -2.4
USP3-209ENST00000558925 EFCAB6Q5THR3 1501 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 TULP4Q9NRJ4 1543 aa0.08□□□□□ -2.4
USP3-209ENST00000558925 FMN2Q9NZ56 1722 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 NWD1Q149M9 1564 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 DIP2BQ9P265 1576 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 RGPD2P0DJD1 1756 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 MYCBP2O75592 4640 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 CEP162Q5TB80 1403 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 MYO3AQ8NEV4 1616 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 MAP3K4Q9Y6R4 1608 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 FXYD6-FXYD2A0A087WZ82 144 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 A0A0D9SFI3 127 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 LCE6AA0A183 80 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 PVALEFA0A1B0GWK0 134 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 IQCF6A8MYZ5 107 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 D6R8Y8 96 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 H0Y9P7 68 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 K7EQZ3 153 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 LEPROTL1O95214 131 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 CYB5AP00167 134 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 GYPAP02724 150 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 IGLC2P0DOY2 106 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 KLK9Q2XQG4 91 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 NMSQ5H8A3 153 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 Q5VSD8 79 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 C6orf201Q7Z4U5 140 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 MUSTN1Q8IVN3 82 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 Q8IZM0 81 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 UBE2D4Q9Y2X8 147 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 SPCS1Q9Y6A9 102 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 KIF20BQ96Q89 1820 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 FANCAO15360 1455 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 ATP10BO94823 1461 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 RALGAPBQ86X10 1494 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 LRP2P98164 4655 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 CUX1P39880 1505 aa0.07□□□□□ -2.4
USP3-209ENST00000558925 LRP1BQ9NZR2 4599 aa0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms