RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PDZD2	O15018	2839 aa		10.68	□□□□□ -0.7
SHMT2-231	ENST00000557433	ACAN	P16112	2415 aa		10.68	□□□□□ -0.7
SHMT2-231	ENST00000557433	HIVEP2	P31629	2446 aa		10.68	□□□□□ -0.7
SHMT2-231	ENST00000557433	TLX1NB	P0CAT3	122 aa		10.66	□□□□□ -0.7
SHMT2-231	ENST00000557433	MRAP	Q8TCY5	172 aa		10.66	□□□□□ -0.7
SHMT2-231	ENST00000557433	OCR1	Q9BZK8	76 aa		10.66	□□□□□ -0.7
SHMT2-231	ENST00000557433	FUS	P35637	526 aa	Known RBP eCLIP	10.66	□□□□□ -0.7
SHMT2-231	ENST00000557433	CUBN	O60494	3623 aa		10.65	□□□□□ -0.71
SHMT2-231	ENST00000557433		Q8N377	158 aa		10.64	□□□□□ -0.71
SHMT2-231	ENST00000557433		A0A0U1RQV1	116 aa		10.64	□□□□□ -0.71
SHMT2-231	ENST00000557433	IGLV5-37	A0A075B6J1	123 aa		10.63	□□□□□ -0.71
SHMT2-231	ENST00000557433	PRY	O14603	147 aa		10.63	□□□□□ -0.71
SHMT2-231	ENST00000557433	ESRG	Q1W209	222 aa		10.63	□□□□□ -0.71
SHMT2-231	ENST00000557433	C7orf33	Q8WU49	177 aa		10.63	□□□□□ -0.71
SHMT2-231	ENST00000557433	IGKV2D-24	A0A075B6R9	120 aa		10.62	□□□□□ -0.71
SHMT2-231	ENST00000557433		Q6ZRX8	168 aa		10.61	□□□□□ -0.71
SHMT2-231	ENST00000557433	NBEAL2	Q6ZNJ1	2754 aa		10.61	□□□□□ -0.71
SHMT2-231	ENST00000557433		Q6ZTC4	211 aa		10.6	□□□□□ -0.71
SHMT2-231	ENST00000557433	INAFM1	C9JVW0	142 aa		10.59	□□□□□ -0.71
SHMT2-231	ENST00000557433		Q8N9L7	120 aa		10.59	□□□□□ -0.71
SHMT2-231	ENST00000557433	C3orf84	H3BNL1	204 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	SPRR1A	P35321	89 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	SERTAD4-AS1	Q5TG53	156 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	FP248	Q71RG6	208 aa	Predicted RBP	10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	DNAH10OS	P0CZ25	163 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	TNP2	Q05952	138 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	DEFB105A	Q8NG35	78 aa		10.58	□□□□□ -0.72
SHMT2-231	ENST00000557433	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	10.57	□□□□□ -0.72
SHMT2-231	ENST00000557433	PRO0628	Q9UI54	55 aa		10.57	□□□□□ -0.72
SHMT2-231	ENST00000557433		Q8NBF4	154 aa		10.56	□□□□□ -0.72
SHMT2-231	ENST00000557433	IGLV1-50	A0A075B6I6	118 aa		10.56	□□□□□ -0.72
SHMT2-231	ENST00000557433	ETDC	A0A1B0GVM5	59 aa		10.56	□□□□□ -0.72
SHMT2-231	ENST00000557433	LCE6A	A0A183	80 aa		10.55	□□□□□ -0.72
SHMT2-231	ENST00000557433	SPRR4	Q96PI1	79 aa		10.55	□□□□□ -0.72
SHMT2-231	ENST00000557433	C1orf137	Q5JT78	98 aa		10.54	□□□□□ -0.72
SHMT2-231	ENST00000557433	UNC79	Q9P2D8	2635 aa		10.54	□□□□□ -0.72
SHMT2-231	ENST00000557433		A0A1W2PNM2	257 aa		10.54	□□□□□ -0.72
SHMT2-231	ENST00000557433	DEFB131B	A0A096LNP1	70 aa		10.53	□□□□□ -0.72
SHMT2-231	ENST00000557433	RETN	Q9HD89	108 aa		10.53	□□□□□ -0.72
SHMT2-231	ENST00000557433		Q9BRP9	147 aa		10.52	□□□□□ -0.72
SHMT2-231	ENST00000557433	LINC00336	Q6ZUF6	198 aa		10.5	□□□□□ -0.73
SHMT2-231	ENST00000557433	NOTCH2	Q04721	2471 aa		10.5	□□□□□ -0.73
SHMT2-231	ENST00000557433	C11orf45	Q8TAV5	145 aa		10.5	□□□□□ -0.73
SHMT2-231	ENST00000557433	SMIM29	Q86T20	159 aa		10.49	□□□□□ -0.73
SHMT2-231	ENST00000557433	MAST4	O15021	2626 aa		10.49	□□□□□ -0.73
SHMT2-231	ENST00000557433	HIGD2A	Q9BW72	106 aa		10.48	□□□□□ -0.73
SHMT2-231	ENST00000557433	RPL37AP8	A6NKH3	93 aa		10.46	□□□□□ -0.73
SHMT2-231	ENST00000557433	MRPL55	Q7Z7F7	128 aa	Known RBP	10.46	□□□□□ -0.73
SHMT2-231	ENST00000557433	LINC00474	Q9P2X8	69 aa		10.46	□□□□□ -0.73
SHMT2-231	ENST00000557433	KRTAP10-11	P60412	298 aa		10.46	□□□□□ -0.74
SHMT2-231	ENST00000557433	ITPR2	Q14571	2701 aa		10.45	□□□□□ -0.74
SHMT2-231	ENST00000557433	FAM30A	Q9NZY2	134 aa		10.45	□□□□□ -0.74
SHMT2-231	ENST00000557433	VWF	P04275	2813 aa		10.44	□□□□□ -0.74
SHMT2-231	ENST00000557433	DSCR10	P59022	87 aa		10.44	□□□□□ -0.74
SHMT2-231	ENST00000557433	OXLD1	Q5BKU9	147 aa		10.44	□□□□□ -0.74
SHMT2-231	ENST00000557433	ST20-AS1	Q8NBB2	130 aa		10.43	□□□□□ -0.74
SHMT2-231	ENST00000557433	ZCCHC13	Q8WW36	166 aa	Known RBP	10.43	□□□□□ -0.74
SHMT2-231	ENST00000557433	FAM168B	A1KXE4	195 aa		10.42	□□□□□ -0.74
SHMT2-231	ENST00000557433	UBE2B	P63146	152 aa		10.42	□□□□□ -0.74
SHMT2-231	ENST00000557433	REG3G	Q6UW15	175 aa		10.41	□□□□□ -0.74
SHMT2-231	ENST00000557433	KRTAP7-1	Q8IUC3	87 aa		10.41	□□□□□ -0.74
SHMT2-231	ENST00000557433	HCG22	E2RYF7	251 aa		10.39	□□□□□ -0.75
SHMT2-231	ENST00000557433	FAM229B	Q4G0N7	80 aa		10.39	□□□□□ -0.75
SHMT2-231	ENST00000557433	LINC00588	Q9Y4M8	146 aa		10.39	□□□□□ -0.75
SHMT2-231	ENST00000557433	IGLV8-61	A0A075B6I0	122 aa		10.38	□□□□□ -0.75
SHMT2-231	ENST00000557433	hDV103S1	A0JD37	113 aa		10.38	□□□□□ -0.75
SHMT2-231	ENST00000557433		K7EQZ3	153 aa		10.38	□□□□□ -0.75
SHMT2-231	ENST00000557433	HIVEP1	P15822	2718 aa		10.38	□□□□□ -0.75
SHMT2-231	ENST00000557433	LINC00476	Q8WZB0	136 aa		10.37	□□□□□ -0.75
SHMT2-231	ENST00000557433	NDUFB1	O75438	58 aa		10.37	□□□□□ -0.75
SHMT2-231	ENST00000557433	CYP4F30P	Q9H0H9	118 aa		10.35	□□□□□ -0.75
SHMT2-231	ENST00000557433	MPLKIP	Q8TAP9	179 aa		10.34	□□□□□ -0.75
SHMT2-231	ENST00000557433	PSCA	O43653	123 aa		10.33	□□□□□ -0.76
SHMT2-231	ENST00000557433	CASC10	Q5T4H9	136 aa		10.33	□□□□□ -0.76
SHMT2-231	ENST00000557433	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	10.32	□□□□□ -0.76
SHMT2-231	ENST00000557433	IGFL1	Q6UW32	110 aa		10.32	□□□□□ -0.76
SHMT2-231	ENST00000557433	NSD1	Q96L73	2696 aa	Predicted RBP	10.31	□□□□□ -0.76
SHMT2-231	ENST00000557433	BRK1	Q8WUW1	75 aa		10.31	□□□□□ -0.76
SHMT2-231	ENST00000557433		Q1T7F1	81 aa		10.31	□□□□□ -0.76
SHMT2-231	ENST00000557433	TEP1	Q99973	2627 aa	Known RBP	10.29	□□□□□ -0.76
SHMT2-231	ENST00000557433	MP68	P56378	58 aa		10.29	□□□□□ -0.76
SHMT2-231	ENST00000557433	TENM1	Q9UKZ4	2725 aa		10.29	□□□□□ -0.76
SHMT2-231	ENST00000557433	C16orf90	A8MZG2	172 aa		10.29	□□□□□ -0.76
SHMT2-231	ENST00000557433	C1orf64	Q8NEQ6	169 aa		10.29	□□□□□ -0.76
SHMT2-231	ENST00000557433		H3BPC8	53 aa		10.28	□□□□□ -0.76
SHMT2-231	ENST00000557433	ATR	Q13535	2644 aa		10.27	□□□□□ -0.77
SHMT2-231	ENST00000557433	OTOG	Q6ZRI0	2925 aa		10.26	□□□□□ -0.77
SHMT2-231	ENST00000557433	CNBP	P62633	177 aa	Known RBP	10.26	□□□□□ -0.77
SHMT2-231	ENST00000557433		A0A087WSZ3	146 aa		10.24	□□□□□ -0.77
SHMT2-231	ENST00000557433		H0Y9J4	135 aa		10.24	□□□□□ -0.77
SHMT2-231	ENST00000557433	SPRR1B	P22528	89 aa		10.24	□□□□□ -0.77
SHMT2-231	ENST00000557433	KRTAP29-1	A8MX34	341 aa	Predicted RBP	10.23	□□□□□ -0.77
SHMT2-231	ENST00000557433		V9GYY9	64 aa		10.23	□□□□□ -0.77
SHMT2-231	ENST00000557433	UBE2A	P49459	152 aa		10.22	□□□□□ -0.77
SHMT2-231	ENST00000557433		A0A096LNI7	61 aa		10.21	□□□□□ -0.77
SHMT2-231	ENST00000557433	TRAV22	A0A0B4J277	110 aa		10.21	□□□□□ -0.77
SHMT2-231	ENST00000557433	SPANXA2-OT1	Q8N9U9	137 aa		10.21	□□□□□ -0.77
SHMT2-231	ENST00000557433	PRLH	P81277	87 aa		10.21	□□□□□ -0.78
SHMT2-231	ENST00000557433	PKIG	Q9Y2B9	76 aa		10.2	□□□□□ -0.78
SHMT2-231	ENST00000557433	C14orf177	Q52M58	125 aa		10.19	□□□□□ -0.78

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