RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 NMUP48645 174 aa6.09□□□□□ -1.43
SYNE2-227ENST00000557307 HERVK_113P61574 105 aa6.09□□□□□ -1.43
SYNE2-227ENST00000557307 C4orf48Q5BLP8 95 aa6.09□□□□□ -1.43
SYNE2-227ENST00000557307 SPINK1P00995 79 aa6.08□□□□□ -1.44
SYNE2-227ENST00000557307 S100A7L2Q5SY68 101 aa6.08□□□□□ -1.44
SYNE2-227ENST00000557307 MIEN1Q9BRT3 115 aa6.08□□□□□ -1.44
SYNE2-227ENST00000557307 ZNF73O43830 326 aaPredicted RBP6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BKO60814 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BJP06899 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BOP23527 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BBP33778 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BDP58876 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BCP62807 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST2H2BEQ16778 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BHQ93079 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BNQ99877 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 HIST1H2BMQ99879 126 aa6.07□□□□□ -1.44
SYNE2-227ENST00000557307 SYS1-DBNDD2H3BUS1 97 aa6.06□□□□□ -1.44
SYNE2-227ENST00000557307 ASB16-AS1Q495Z4 193 aa6.06□□□□□ -1.44
SYNE2-227ENST00000557307 C9orf153Q5TBE3 101 aa6.06□□□□□ -1.44
SYNE2-227ENST00000557307 SSBP3-AS1Q7Z2R9 100 aa6.05□□□□□ -1.44
SYNE2-227ENST00000557307 LINC00308Q8TCZ7 52 aa6.05□□□□□ -1.44
SYNE2-227ENST00000557307 S100A12P80511 92 aa6.04□□□□□ -1.44
SYNE2-227ENST00000557307 LINC01545Q5VT33 79 aa6.04□□□□□ -1.44
SYNE2-227ENST00000557307 RPS29P62273 56 aaKnown RBP6.03□□□□□ -1.44
SYNE2-227ENST00000557307 XP32Q5T750 250 aa6.03□□□□□ -1.44
SYNE2-227ENST00000557307 C3orf79P0CE67 100 aa6.02□□□□□ -1.45
SYNE2-227ENST00000557307 HRCT1Q6UXD1 115 aa6.02□□□□□ -1.45
SYNE2-227ENST00000557307 SPANXCQ9NY87 97 aa6.02□□□□□ -1.45
SYNE2-227ENST00000557307 ZNF815PA8K554 130 aa6.01□□□□□ -1.45
SYNE2-227ENST00000557307 OR13C6PQ8NH95 151 aa6.01□□□□□ -1.45
SYNE2-227ENST00000557307 SLC25A20O43772 301 aa6□□□□□ -1.45
SYNE2-227ENST00000557307 SPRR1BP22528 89 aa6□□□□□ -1.45
SYNE2-227ENST00000557307 JOSD1Q15040 202 aaPredicted RBP6□□□□□ -1.45
SYNE2-227ENST00000557307 ANKRD39Q53RE8 183 aa6□□□□□ -1.45
SYNE2-227ENST00000557307 TIMM17BO60830 172 aa5.99□□□□□ -1.45
SYNE2-227ENST00000557307 ELOF1P60002 83 aaKnown RBP5.99□□□□□ -1.45
SYNE2-227ENST00000557307 C6orf99Q4VX62 202 aa5.99□□□□□ -1.45
SYNE2-227ENST00000557307 PET117Q6UWS5 81 aa5.99□□□□□ -1.45
SYNE2-227ENST00000557307 A0A0G2JQZ4 141 aa5.98□□□□□ -1.45
SYNE2-227ENST00000557307 KRTAP19-2Q3LHN2 52 aa5.98□□□□□ -1.45
SYNE2-227ENST00000557307 LCE2CQ5TA81 110 aa5.98□□□□□ -1.45
SYNE2-227ENST00000557307 ATOH7Q8N100 152 aa5.98□□□□□ -1.45
SYNE2-227ENST00000557307 COX7BP24311 80 aa5.97□□□□□ -1.45
SYNE2-227ENST00000557307 SEC61BP60468 96 aaKnown RBP5.97□□□□□ -1.45
SYNE2-227ENST00000557307 KRTDAPP60985 99 aa5.97□□□□□ -1.45
SYNE2-227ENST00000557307 Q1RN00 199 aa5.97□□□□□ -1.45
SYNE2-227ENST00000557307 SPANXDQ9BXN6 97 aa5.97□□□□□ -1.45
SYNE2-227ENST00000557307 C9orf92A6NGG3 77 aa5.96□□□□□ -1.46
SYNE2-227ENST00000557307 LINC01547P58512 204 aaPredicted RBP5.96□□□□□ -1.46
SYNE2-227ENST00000557307 SMIM29Q86T20 159 aa5.96□□□□□ -1.46
SYNE2-227ENST00000557307 KRTAP9-6A0A140TA67 174 aa5.95□□□□□ -1.46
SYNE2-227ENST00000557307 H7C2G1 150 aa5.95□□□□□ -1.46
SYNE2-227ENST00000557307 DEFB105AQ8NG35 78 aa5.95□□□□□ -1.46
SYNE2-227ENST00000557307 C5orf52A6NGY3 159 aa5.94□□□□□ -1.46
SYNE2-227ENST00000557307 COA6Q5JTJ3 125 aaKnown RBP5.94□□□□□ -1.46
SYNE2-227ENST00000557307 PCP2Q8IVA1 136 aa5.94□□□□□ -1.46
SYNE2-227ENST00000557307 DHRS4-AS1Q9P1J3 65 aa5.94□□□□□ -1.46
SYNE2-227ENST00000557307 HINT1P49773 126 aaPredicted RBP5.93□□□□□ -1.46
SYNE2-227ENST00000557307 PCOTHQ58A44 107 aa5.92□□□□□ -1.46
SYNE2-227ENST00000557307 MUSTN1Q8IVN3 82 aa5.92□□□□□ -1.46
SYNE2-227ENST00000557307 LAMTOR3Q9UHA4 124 aa5.92□□□□□ -1.46
SYNE2-227ENST00000557307 SCGB1D4Q6XE38 83 aa5.91□□□□□ -1.46
SYNE2-227ENST00000557307 LIMD2Q9BT23 127 aa5.91□□□□□ -1.46
SYNE2-227ENST00000557307 TAL2Q16559 108 aa5.9□□□□□ -1.46
SYNE2-227ENST00000557307 LINC00518Q8N0U6 118 aa5.9□□□□□ -1.46
SYNE2-227ENST00000557307 CBY1Q9Y3M2 126 aa5.9□□□□□ -1.46
SYNE2-227ENST00000557307 IGLV5-48A0A075B6I7 105 aa5.89□□□□□ -1.47
SYNE2-227ENST00000557307 TEX49A0A1B0GTD5 131 aa5.89□□□□□ -1.47
SYNE2-227ENST00000557307 A6NDN8 102 aa5.89□□□□□ -1.47
SYNE2-227ENST00000557307 MT1HP80294 61 aa5.89□□□□□ -1.47
SYNE2-227ENST00000557307 FLGP20930 4061 aaPredicted RBP5.89□□□□□ -1.47
SYNE2-227ENST00000557307 TRBV7-6A0A0J9YX20 115 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 A0A1B0GWB2 263 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 C1orf195Q5TG92 126 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 SLC25A34Q6PIV7 304 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 SMIM11BQ8TCY0 68 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 PRO1933Q9H354 126 aa5.88□□□□□ -1.47
SYNE2-227ENST00000557307 IGLV8-61A0A075B6I0 122 aa5.87□□□□□ -1.47
SYNE2-227ENST00000557307 IFITM1P13164 125 aa5.86□□□□□ -1.47
SYNE2-227ENST00000557307 CD164Q04900 197 aa5.86□□□□□ -1.47
SYNE2-227ENST00000557307 LCE2DQ5TA82 110 aaPredicted RBP5.86□□□□□ -1.47
SYNE2-227ENST00000557307 C20orf202A1L168 122 aa5.85□□□□□ -1.47
SYNE2-227ENST00000557307 HIST3H2BBQ8N257 126 aa5.84□□□□□ -1.47
SYNE2-227ENST00000557307 FSIP2Q5CZC0 6907 aa5.84□□□□□ -1.48
SYNE2-227ENST00000557307 AKR1D1P51857 326 aa5.83□□□□□ -1.48
SYNE2-227ENST00000557307 Q5XG85 94 aa5.83□□□□□ -1.48
SYNE2-227ENST00000557307 Q6ZVH6 145 aa5.83□□□□□ -1.48
SYNE2-227ENST00000557307 HIST1H2BLQ99880 126 aa5.82□□□□□ -1.48
SYNE2-227ENST00000557307 TRAV13-2A0A0B4J235 113 aa5.81□□□□□ -1.48
SYNE2-227ENST00000557307 A4D1N5 150 aa5.81□□□□□ -1.48
SYNE2-227ENST00000557307 RPL37P61927 97 aaKnown RBP5.81□□□□□ -1.48
SYNE2-227ENST00000557307 LINC00575Q6W349 94 aa5.8□□□□□ -1.48
SYNE2-227ENST00000557307 Q6ZQY7 126 aa5.8□□□□□ -1.48
SYNE2-227ENST00000557307 COPS9Q8WXC6 57 aa5.8□□□□□ -1.48
SYNE2-227ENST00000557307 C12orf57Q99622 126 aa5.8□□□□□ -1.48
SYNE2-227ENST00000557307 LORP23490 312 aaPredicted RBP5.78□□□□□ -1.48
SYNE2-227ENST00000557307 IGFL1Q6UW32 110 aa5.78□□□□□ -1.48
SYNE2-227ENST00000557307 KRTAP10-6P60371 365 aaPredicted RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms