RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NDUFS5O43920 106 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 MT1FP04733 61 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 HERVK_113P63121 156 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 ZNF345Q14585 488 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 FAM19A3Q7Z5A8 133 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 AKAP14Q86UN6 197 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 SND1-IT1Q9HBX3 110 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 BATF3Q9NR55 127 aa3.36□□□□□ -1.87
LIMA1-204ENST00000549064 LOC389332A0A1B0GUA5 103 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 PSMB2P49721 201 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 CEBPGP53567 150 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 RPL37P61927 97 aaKnown RBP3.35□□□□□ -1.87
LIMA1-204ENST00000549064 DEFB116Q30KQ4 102 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 C8orf17Q9NRJ1 99 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 V9GYV3 84 aa3.35□□□□□ -1.87
LIMA1-204ENST00000549064 IGHV6-1A0A0B4J1U7 121 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 ERC2-IT1O76042 136 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 SPINK8P0C7L1 97 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 KRTAP10-12P60413 245 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 PMVKQ15126 192 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 KRTAP19-6Q3LI70 58 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 PDZD11Q5EBL8 140 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 C9orf153Q5TBE3 101 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 OSTCQ9NRP0 149 aa3.34□□□□□ -1.87
LIMA1-204ENST00000549064 TMEM223A0PJW6 202 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 IGIPA6NJ69 53 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 SEC11AP67812 179 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 HRCT1Q6UXD1 115 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 NAT8BQ9UHF3 227 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 CYSLTR1Q9Y271 337 aa3.33□□□□□ -1.88
LIMA1-204ENST00000549064 BPY2O14599 106 aa3.32□□□□□ -1.88
LIMA1-204ENST00000549064 CD164Q04900 197 aa3.32□□□□□ -1.88
LIMA1-204ENST00000549064 MRPL54Q6P161 138 aaKnown RBP3.32□□□□□ -1.88
LIMA1-204ENST00000549064 LINC00846Q9NV44 126 aa3.32□□□□□ -1.88
LIMA1-204ENST00000549064 MUC12Q9UKN1 5478 aa3.32□□□□□ -1.88
LIMA1-204ENST00000549064 NEBP20929 6669 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 ETDCA0A1B0GVM5 59 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 TMEM250H0YL14 139 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 SPRR1AP35321 89 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 ZNF625Q96I27 306 aaPredicted RBP3.31□□□□□ -1.88
LIMA1-204ENST00000549064 PRELID3AQ96N28 172 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 SMIM7Q9BQ49 75 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 ERG28Q9UKR5 140 aa3.31□□□□□ -1.88
LIMA1-204ENST00000549064 HMSDA8MTL9 139 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 PPBPP02775 128 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 KRTAP10-10P60014 251 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 TMEM136Q6ZRR5 245 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 ORMDL3Q8N138 153 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 LIMD2Q9BT23 127 aa3.3□□□□□ -1.88
LIMA1-204ENST00000549064 TINCRA0A1B0GVN0 87 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 A0A1B0GXF2 115 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 SMIM27A0A1W2PRY6 76 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 NCR3O14931 201 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 Q8N8P6 123 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 Q9BRP9 147 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 MAP1LC3AQ9H492 121 aa3.29□□□□□ -1.88
LIMA1-204ENST00000549064 F8W036 122 aa3.28□□□□□ -1.88
LIMA1-204ENST00000549064 KCNQ1DNQ9H478 68 aa3.28□□□□□ -1.88
LIMA1-204ENST00000549064 TRBV10-3A0A0K0K1G6 114 aa3.27□□□□□ -1.89
LIMA1-204ENST00000549064 ADCYAP1P18509 176 aa3.27□□□□□ -1.89
LIMA1-204ENST00000549064 H7C2G1 150 aa3.26□□□□□ -1.89
LIMA1-204ENST00000549064 S100A8P05109 93 aa3.26□□□□□ -1.89
LIMA1-204ENST00000549064 COX17Q14061 63 aa3.26□□□□□ -1.89
LIMA1-204ENST00000549064 ST20-AS1Q8NBB2 130 aa3.26□□□□□ -1.89
LIMA1-204ENST00000549064 RBM12B-AS1Q9P1G2 102 aa3.26□□□□□ -1.89
LIMA1-204ENST00000549064 TRAV9-1A0A075B6T8 112 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 C20orf202A1L168 122 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 A8MU10 97 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 SRP19P09132 144 aaKnown RBP3.25□□□□□ -1.89
LIMA1-204ENST00000549064 LINC00158P58513 81 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 ADIRFQ15847 76 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 C1orf195Q5TG92 126 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 Q5W150 140 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 TOMM6Q96B49 74 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 SCGB3A1Q96QR1 104 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 CST9LQ9H4G1 147 aa3.25□□□□□ -1.89
LIMA1-204ENST00000549064 H3BRM9 83 aa3.24□□□□□ -1.89
LIMA1-204ENST00000549064 LGALS3P17931 250 aaKnown RBP3.24□□□□□ -1.89
LIMA1-204ENST00000549064 Q6ZRX8 168 aa3.24□□□□□ -1.89
LIMA1-204ENST00000549064 LAMTOR2Q9Y2Q5 125 aa3.24□□□□□ -1.89
LIMA1-204ENST00000549064 LUZP6Q538Z0 58 aa3.23□□□□□ -1.89
LIMA1-204ENST00000549064 K7EMI3 77 aa3.22□□□□□ -1.89
LIMA1-204ENST00000549064 ZNF22P17026 224 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-204ENST00000549064 Q8N9L7 120 aa3.22□□□□□ -1.89
LIMA1-204ENST00000549064 NXT2Q9NPJ8 142 aaKnown RBP3.22□□□□□ -1.89
LIMA1-204ENST00000549064 SMIM13P0DJ93 91 aa3.21□□□□□ -1.9
LIMA1-204ENST00000549064 IGLC3P0DOY3 106 aa3.21□□□□□ -1.9
LIMA1-204ENST00000549064 ALKAL2Q6UX46 152 aa3.21□□□□□ -1.9
LIMA1-204ENST00000549064 ATP11AUNQ6ZP68 121 aa3.21□□□□□ -1.9
LIMA1-204ENST00000549064 SLC51BQ86UW2 128 aa3.21□□□□□ -1.9
LIMA1-204ENST00000549064 A0A0G2JQZ4 141 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 C9JQL5 133 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 G0S2P27469 103 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 DDTP30046 118 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 ATP5L2Q7Z4Y8 100 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 MIR7-3HGQ8N6C7 128 aa3.2□□□□□ -1.9
LIMA1-204ENST00000549064 C20orf166-AS1Q96NR2 134 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms