RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 VPS25Q9BRG1 176 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 ORMDL1Q9P0S3 153 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 STARD9Q9P2P6 4700 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 TRAV23DV6A0A075B6W5 121 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 TMEM256-PLSCR3K7ERE1 68 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 RPL18AQ02543 176 aaKnown RBP4.03□□□□□ -1.76
SYNE1-239ENST00000545694 C6orf99Q4VX62 202 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 Q6ZRP5 223 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 MTURNQ8N3F0 131 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 Q8N814 137 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 NKAPP1Q8N9T2 125 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 LINC00476Q8WZB0 136 aa4.03□□□□□ -1.76
SYNE1-239ENST00000545694 TRBV10-3A0A0K0K1G6 114 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 JMJD7-PLA2G4BH0Y9G9 81 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 NCR3O14931 201 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 ZNF73O43830 326 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-239ENST00000545694 GAGE2EQ4V326 116 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 LINC00575Q6W349 94 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 FAM218AQ96MZ4 157 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 LYSTQ99698 3801 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 KCNQ1DNQ9H478 68 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 XAGE1AQ9HD64 81 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 LINC00474Q9P2X8 69 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 GAGE2DQ9UEU5 116 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 TGP01266 2768 aa4.02□□□□□ -1.77
SYNE1-239ENST00000545694 DNAH10Q8IVF4 4471 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 A0A087WYN8 130 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 hADV29S1A0JD25 119 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 C16orf90A8MZG2 172 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 PRYO14603 147 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 LECT2O14960 151 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 COX7BP24311 80 aa4.01□□□□□ -1.77
SYNE1-239ENST00000545694 ELOF1P60002 83 aaKnown RBP4.01□□□□□ -1.77
SYNE1-239ENST00000545694 PRR3P79522 188 aaKnown RBP4.01□□□□□ -1.77
SYNE1-239ENST00000545694 C9orf129Q5T035 196 aaKnown RBP4.01□□□□□ -1.77
SYNE1-239ENST00000545694 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-239ENST00000545694 TEX49A0A1B0GTD5 131 aa4□□□□□ -1.77
SYNE1-239ENST00000545694 KRTAP29-1A8MX34 341 aaPredicted RBP4□□□□□ -1.77
SYNE1-239ENST00000545694 Q8NDZ9 215 aa4□□□□□ -1.77
SYNE1-239ENST00000545694 OBSCN-AS1Q96MR7 158 aa4□□□□□ -1.77
SYNE1-239ENST00000545694 KRTAP1-5Q9BYS1 174 aa4□□□□□ -1.77
SYNE1-239ENST00000545694 PDE6GP18545 87 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 CASC10Q5T4H9 136 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 C9orf163Q8N9P6 203 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 SIGMAR1Q99720 223 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 DHRS4-AS1Q9P1J3 65 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 FBN3Q75N90 2809 aa3.99□□□□□ -1.77
SYNE1-239ENST00000545694 LRCOL1A6NCL2 159 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 C3orf84H3BNL1 204 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 SCGB1A1P11684 91 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 GAGE2BQ13066 116 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 Q6ZR54 194 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 Q6ZRN7 208 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-239ENST00000545694 MRPL55Q7Z7F7 128 aaKnown RBP3.98□□□□□ -1.77
SYNE1-239ENST00000545694 DNAH2Q9P225 4427 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 HECTD4Q9Y4D8 3996 aa3.98□□□□□ -1.77
SYNE1-239ENST00000545694 IGLV1-50A0A075B6I6 118 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 SPRR1AP35321 89 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 C7orf33Q8WU49 177 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 C22orf24Q9Y442 160 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 DNAH17Q9UFH2 4485 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 ALMS1Q8TCU4 4167 aa3.97□□□□□ -1.77
SYNE1-239ENST00000545694 ETDCA0A1B0GVM5 59 aa3.96□□□□□ -1.78
SYNE1-239ENST00000545694 SERTAD4-AS1Q5TG53 156 aa3.96□□□□□ -1.78
SYNE1-239ENST00000545694 LOC110117498A0A087WWA1 95 aa3.95□□□□□ -1.78
SYNE1-239ENST00000545694 KRTAP4-16G5E9R7 235 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-239ENST00000545694 RBM3P98179 157 aaKnown RBP3.95□□□□□ -1.78
SYNE1-239ENST00000545694 Q6ZQY7 126 aa3.95□□□□□ -1.78
SYNE1-239ENST00000545694 Q6ZRX8 168 aa3.95□□□□□ -1.78
SYNE1-239ENST00000545694 KMT2AQ03164 3969 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 A0A087WTM6 91 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 A0A096LNI7 61 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 A0A1B0GW54 56 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 B5MCH6 92 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 H0Y9J4 135 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 CCKP06307 115 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 C1orf134Q5TEV5 83 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 REG3GQ6UW15 175 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 SDIM1Q6ZPB5 146 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 IMUPQ9GZP8 106 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 LAMTOR3Q9UHA4 124 aa3.94□□□□□ -1.78
SYNE1-239ENST00000545694 EPM2AB3EWF7 344 aa3.93□□□□□ -1.78
SYNE1-239ENST00000545694 Q6Q795 121 aa3.93□□□□□ -1.78
SYNE1-239ENST00000545694 FAM19A5Q7Z5A7 132 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-239ENST00000545694 LINC00643Q86TS7 51 aa3.93□□□□□ -1.78
SYNE1-239ENST00000545694 DSCR8Q96T75 97 aa3.93□□□□□ -1.78
SYNE1-239ENST00000545694 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-239ENST00000545694 RPL37AP8A6NKH3 93 aa3.92□□□□□ -1.78
SYNE1-239ENST00000545694 GAGE2AQ6NT46 116 aa3.92□□□□□ -1.78
SYNE1-239ENST00000545694 KRTAP7-1Q8IUC3 87 aa3.92□□□□□ -1.78
SYNE1-239ENST00000545694 C14orf132Q9NPU4 83 aa3.92□□□□□ -1.78
SYNE1-239ENST00000545694 IGLV5-48A0A075B6I7 105 aa3.91□□□□□ -1.78
SYNE1-239ENST00000545694 IGKV2-24A0A0C4DH68 120 aa3.91□□□□□ -1.78
SYNE1-239ENST00000545694 FAM168BA1KXE4 195 aa3.91□□□□□ -1.78
SYNE1-239ENST00000545694 M0R2N4 97 aa3.91□□□□□ -1.78
SYNE1-239ENST00000545694 NDUFV3P56181 108 aaKnown RBP3.91□□□□□ -1.78
SYNE1-239ENST00000545694 ATP5EP2Q5VTU8 51 aa3.91□□□□□ -1.78
SYNE1-239ENST00000545694 TRBV7-4A0A0J9YYF1 115 aa3.9□□□□□ -1.79
SYNE1-239ENST00000545694 TRBV7-7A0A0K0K1E9 115 aa3.9□□□□□ -1.79
SYNE1-239ENST00000545694 A0A1W2PNN7 141 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms