RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MYMXA0A1B0GTQ4 84 aa9.56□□□□□ -0.88
CLSTN3-214ENST00000542663 IGLV6-57P01721 117 aa9.56□□□□□ -0.88
CLSTN3-214ENST00000542663 TSPEAR-AS2P59090 65 aa9.56□□□□□ -0.88
CLSTN3-214ENST00000542663 M0R2T5 61 aa9.55□□□□□ -0.88
CLSTN3-214ENST00000542663 LEPROTL1O95214 131 aa9.55□□□□□ -0.88
CLSTN3-214ENST00000542663 HRCT1Q6UXD1 115 aa9.55□□□□□ -0.88
CLSTN3-214ENST00000542663 LIMD2Q9BT23 127 aa9.55□□□□□ -0.88
CLSTN3-214ENST00000542663 SPANXB1Q9NS25 103 aaPredicted RBP9.55□□□□□ -0.88
CLSTN3-214ENST00000542663 H0Y8G0 127 aa9.54□□□□□ -0.88
CLSTN3-214ENST00000542663 JOSD1Q15040 202 aaPredicted RBP9.54□□□□□ -0.88
CLSTN3-214ENST00000542663 TRAV23DV6A0A075B6W5 121 aa9.53□□□□□ -0.88
CLSTN3-214ENST00000542663 S100A7L2Q5SY68 101 aa9.52□□□□□ -0.89
CLSTN3-214ENST00000542663 ZNF73O43830 326 aaPredicted RBP9.51□□□□□ -0.89
CLSTN3-214ENST00000542663 HSPB8Q9UJY1 196 aa9.51□□□□□ -0.89
CLSTN3-214ENST00000542663 C5orf52A6NGY3 159 aa9.5□□□□□ -0.89
CLSTN3-214ENST00000542663 NDUFC2O95298 119 aa9.5□□□□□ -0.89
CLSTN3-214ENST00000542663 FABP4P15090 132 aa9.5□□□□□ -0.89
CLSTN3-214ENST00000542663 SPRR1BP22528 89 aa9.5□□□□□ -0.89
CLSTN3-214ENST00000542663 KRTAP9-7A8MTY7 169 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BKO60814 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BJP06899 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BOP23527 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BBP33778 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BDP58876 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BCP62807 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST2H2BEQ16778 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BHQ93079 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BNQ99877 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 HIST1H2BMQ99879 126 aa9.49□□□□□ -0.89
CLSTN3-214ENST00000542663 LEPROTO15243 131 aa9.48□□□□□ -0.89
CLSTN3-214ENST00000542663 EIF4EBP3O60516 100 aaPredicted RBP9.48□□□□□ -0.89
CLSTN3-214ENST00000542663 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.47□□□□□ -0.89
CLSTN3-214ENST00000542663 SOSTDC1Q6X4U4 206 aa9.47□□□□□ -0.89
CLSTN3-214ENST00000542663 COX6B2Q6YFQ2 88 aa9.47□□□□□ -0.89
CLSTN3-214ENST00000542663 MIEN1Q9BRT3 115 aa9.47□□□□□ -0.89
CLSTN3-214ENST00000542663 PLNP26678 52 aa9.46□□□□□ -0.9
CLSTN3-214ENST00000542663 PMCHL2Q9BQD1 86 aa9.46□□□□□ -0.9
CLSTN3-214ENST00000542663 DPM2O94777 84 aa9.45□□□□□ -0.9
CLSTN3-214ENST00000542663 RPL37P61927 97 aaKnown RBP9.45□□□□□ -0.9
CLSTN3-214ENST00000542663 J3QQQ9 107 aa9.44□□□□□ -0.9
CLSTN3-214ENST00000542663 NPC2P61916 151 aa9.43□□□□□ -0.9
CLSTN3-214ENST00000542663 IGKCP01834 107 aa9.42□□□□□ -0.9
CLSTN3-214ENST00000542663 HERVK_113P61574 105 aa9.42□□□□□ -0.9
CLSTN3-214ENST00000542663 CD164Q04900 197 aa9.42□□□□□ -0.9
CLSTN3-214ENST00000542663 SLC25A34Q6PIV7 304 aa9.42□□□□□ -0.9
CLSTN3-214ENST00000542663 H7C2G1 150 aa9.41□□□□□ -0.9
CLSTN3-214ENST00000542663 ADAMTSL4-AS1Q5T5F5 129 aa9.41□□□□□ -0.9
CLSTN3-214ENST00000542663 LAMTOR3Q9UHA4 124 aa9.41□□□□□ -0.9
CLSTN3-214ENST00000542663 NMUP48645 174 aa9.4□□□□□ -0.9
CLSTN3-214ENST00000542663 C1orf195Q5TG92 126 aa9.4□□□□□ -0.9
CLSTN3-214ENST00000542663 SYS1-DBNDD2H3BUS1 97 aa9.39□□□□□ -0.91
CLSTN3-214ENST00000542663 HINT1P49773 126 aaPredicted RBP9.39□□□□□ -0.91
CLSTN3-214ENST00000542663 Q5XG85 94 aa9.39□□□□□ -0.91
CLSTN3-214ENST00000542663 DHRS4-AS1Q9P1J3 65 aa9.38□□□□□ -0.91
CLSTN3-214ENST00000542663 LGALS3P17931 250 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-214ENST00000542663 Q1RN00 199 aa9.37□□□□□ -0.91
CLSTN3-214ENST00000542663 COA6Q5JTJ3 125 aaKnown RBP9.37□□□□□ -0.91
CLSTN3-214ENST00000542663 A0A0J9YXY3 114 aa9.36□□□□□ -0.91
CLSTN3-214ENST00000542663 PRO1933Q9H354 126 aa9.36□□□□□ -0.91
CLSTN3-214ENST00000542663 CBY1Q9Y3M2 126 aa9.35□□□□□ -0.91
CLSTN3-214ENST00000542663 SSPOA2VEC9 5147 aa9.35□□□□□ -0.91
CLSTN3-214ENST00000542663 LINC01545Q5VT33 79 aa9.34□□□□□ -0.91
CLSTN3-214ENST00000542663 PET117Q6UWS5 81 aa9.34□□□□□ -0.91
CLSTN3-214ENST00000542663 A0A0G2JQZ4 141 aa9.33□□□□□ -0.92
CLSTN3-214ENST00000542663 E9PLD3 99 aa9.33□□□□□ -0.92
CLSTN3-214ENST00000542663 ELOF1P60002 83 aaKnown RBP9.33□□□□□ -0.92
CLSTN3-214ENST00000542663 C3orf79P0CE67 100 aa9.32□□□□□ -0.92
CLSTN3-214ENST00000542663 SMIM29Q86T20 159 aa9.32□□□□□ -0.92
CLSTN3-214ENST00000542663 DEFB105AQ8NG35 78 aa9.32□□□□□ -0.92
CLSTN3-214ENST00000542663 OR13C6PQ8NH95 151 aa9.32□□□□□ -0.92
CLSTN3-214ENST00000542663 S100A1P23297 94 aa9.31□□□□□ -0.92
CLSTN3-214ENST00000542663 TAL2Q16559 108 aa9.31□□□□□ -0.92
CLSTN3-214ENST00000542663 SPANXCQ9NY87 97 aa9.31□□□□□ -0.92
CLSTN3-214ENST00000542663 USH2AO75445 5202 aa9.31□□□□□ -0.92
CLSTN3-214ENST00000542663 KRTDAPP60985 99 aa9.3□□□□□ -0.92
CLSTN3-214ENST00000542663 LITAFQ99732 161 aa9.3□□□□□ -0.92
CLSTN3-214ENST00000542663 TEX49A0A1B0GTD5 131 aa9.29□□□□□ -0.92
CLSTN3-214ENST00000542663 COX7BP24311 80 aa9.29□□□□□ -0.92
CLSTN3-214ENST00000542663 AKR1D1P51857 326 aa9.29□□□□□ -0.92
CLSTN3-214ENST00000542663 LINC00308Q8TCZ7 52 aa9.29□□□□□ -0.92
CLSTN3-214ENST00000542663 C6orf99Q4VX62 202 aa9.28□□□□□ -0.92
CLSTN3-214ENST00000542663 SPANXDQ9BXN6 97 aa9.27□□□□□ -0.93
CLSTN3-214ENST00000542663 KRTAP9-8Q9BYQ0 159 aa9.26□□□□□ -0.93
CLSTN3-214ENST00000542663 C20orf202A1L168 122 aa9.25□□□□□ -0.93
CLSTN3-214ENST00000542663 Q6Q795 121 aa9.25□□□□□ -0.93
CLSTN3-214ENST00000542663 IGLV5-48A0A075B6I7 105 aa9.23□□□□□ -0.93
CLSTN3-214ENST00000542663 ZNF815PA8K554 130 aa9.23□□□□□ -0.93
CLSTN3-214ENST00000542663 CFC1P0CG37 223 aa9.22□□□□□ -0.93
CLSTN3-214ENST00000542663 TTTY13Q9BZ97 58 aa9.22□□□□□ -0.93
CLSTN3-214ENST00000542663 TIMM17BO60830 172 aa9.2□□□□□ -0.94
CLSTN3-214ENST00000542663 ANKRD39Q53RE8 183 aa9.2□□□□□ -0.94
CLSTN3-214ENST00000542663 ATOH7Q8N100 152 aa9.2□□□□□ -0.94
CLSTN3-214ENST00000542663 HIST3H2BBQ8N257 126 aa9.2□□□□□ -0.94
CLSTN3-214ENST00000542663 TRBV7-6A0A0J9YX20 115 aa9.19□□□□□ -0.94
CLSTN3-214ENST00000542663 TCL1BO95988 128 aa9.18□□□□□ -0.94
CLSTN3-214ENST00000542663 S100A2P29034 98 aa9.17□□□□□ -0.94
CLSTN3-214ENST00000542663 LINC00518Q8N0U6 118 aa9.17□□□□□ -0.94
CLSTN3-214ENST00000542663 HIST1H2BLQ99880 126 aa9.17□□□□□ -0.94
CLSTN3-214ENST00000542663 FCGBPQ9Y6R7 5405 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms