RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 HRCT1Q6UXD1 115 aa8.38□□□□□ -1.07
CLSTN3-213ENST00000541953 J3QQQ9 107 aa8.37□□□□□ -1.07
CLSTN3-213ENST00000541953 ADAMTSL4-AS1Q5T5F5 129 aa8.37□□□□□ -1.07
CLSTN3-213ENST00000541953 PMCHL2Q9BQD1 86 aa8.37□□□□□ -1.07
CLSTN3-213ENST00000541953 ZNF73O43830 326 aaPredicted RBP8.36□□□□□ -1.07
CLSTN3-213ENST00000541953 KRTAP10-6P60371 365 aaPredicted RBP8.36□□□□□ -1.07
CLSTN3-213ENST00000541953 S100A7L2Q5SY68 101 aa8.36□□□□□ -1.07
CLSTN3-213ENST00000541953 HSBP1O75506 76 aa8.35□□□□□ -1.07
CLSTN3-213ENST00000541953 NDUFC2O95298 119 aa8.35□□□□□ -1.07
CLSTN3-213ENST00000541953 MIEN1Q9BRT3 115 aa8.33□□□□□ -1.08
CLSTN3-213ENST00000541953 SERF1AO75920 110 aa8.32□□□□□ -1.08
CLSTN3-213ENST00000541953 JOSD1Q15040 202 aaPredicted RBP8.32□□□□□ -1.08
CLSTN3-213ENST00000541953 A0A0J9YXY3 114 aa8.31□□□□□ -1.08
CLSTN3-213ENST00000541953 LEPROTL1O95214 131 aa8.31□□□□□ -1.08
CLSTN3-213ENST00000541953 SNAPINO95295 136 aa8.31□□□□□ -1.08
CLSTN3-213ENST00000541953 SPRR1BP22528 89 aa8.31□□□□□ -1.08
CLSTN3-213ENST00000541953 LGALS3P17931 250 aaKnown RBP8.3□□□□□ -1.08
CLSTN3-213ENST00000541953 PLNP26678 52 aa8.3□□□□□ -1.08
CLSTN3-213ENST00000541953 SVBPQ8N300 66 aa8.3□□□□□ -1.08
CLSTN3-213ENST00000541953 DPM2O94777 84 aa8.29□□□□□ -1.08
CLSTN3-213ENST00000541953 CFC1BP0CG36 223 aa8.29□□□□□ -1.08
CLSTN3-213ENST00000541953 NMUP48645 174 aa8.29□□□□□ -1.08
CLSTN3-213ENST00000541953 FABP4P15090 132 aa8.28□□□□□ -1.08
CLSTN3-213ENST00000541953 LITAFQ99732 161 aa8.28□□□□□ -1.08
CLSTN3-213ENST00000541953 LIMD2Q9BT23 127 aa8.28□□□□□ -1.08
CLSTN3-213ENST00000541953 A0A0G2JQZ4 141 aa8.27□□□□□ -1.09
CLSTN3-213ENST00000541953 H7C2G1 150 aa8.27□□□□□ -1.09
CLSTN3-213ENST00000541953 IGKCP01834 107 aa8.27□□□□□ -1.09
CLSTN3-213ENST00000541953 TRGC2P03986 189 aa8.27□□□□□ -1.09
CLSTN3-213ENST00000541953 HERVK_113P61574 105 aa8.26□□□□□ -1.09
CLSTN3-213ENST00000541953 Q1RN00 199 aa8.26□□□□□ -1.09
CLSTN3-213ENST00000541953 C5orf52A6NGY3 159 aa8.25□□□□□ -1.09
CLSTN3-213ENST00000541953 NDUFA5Q16718 116 aa8.23□□□□□ -1.09
CLSTN3-213ENST00000541953 OR13C6PQ8NH95 151 aa8.23□□□□□ -1.09
CLSTN3-213ENST00000541953 LINC00308Q8TCZ7 52 aa8.23□□□□□ -1.09
CLSTN3-213ENST00000541953 E9PLD3 99 aa8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 ELOF1P60002 83 aaKnown RBP8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 C1orf195Q5TG92 126 aa8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 SMIM29Q86T20 159 aa8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 SPANXCQ9NY87 97 aa8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 LAMTOR3Q9UHA4 124 aa8.22□□□□□ -1.09
CLSTN3-213ENST00000541953 DEFB105AQ8NG35 78 aa8.21□□□□□ -1.1
CLSTN3-213ENST00000541953 TTTY13Q9BZ97 58 aa8.21□□□□□ -1.1
CLSTN3-213ENST00000541953 DHRS4-AS1Q9P1J3 65 aa8.21□□□□□ -1.1
CLSTN3-213ENST00000541953 HSPB8Q9UJY1 196 aa8.21□□□□□ -1.1
CLSTN3-213ENST00000541953 HINT1P49773 126 aaPredicted RBP8.2□□□□□ -1.1
CLSTN3-213ENST00000541953 RPL37P61927 97 aaKnown RBP8.2□□□□□ -1.1
CLSTN3-213ENST00000541953 C6orf99Q4VX62 202 aa8.2□□□□□ -1.1
CLSTN3-213ENST00000541953 M0R2T5 61 aa8.19□□□□□ -1.1
CLSTN3-213ENST00000541953 CD164Q04900 197 aa8.19□□□□□ -1.1
CLSTN3-213ENST00000541953 COX7BP24311 80 aa8.18□□□□□ -1.1
CLSTN3-213ENST00000541953 SLC25A34Q6PIV7 304 aa8.18□□□□□ -1.1
CLSTN3-213ENST00000541953 PRO1933Q9H354 126 aa8.17□□□□□ -1.1
CLSTN3-213ENST00000541953 TAL2Q16559 108 aa8.16□□□□□ -1.1
CLSTN3-213ENST00000541953 Q5XG85 94 aa8.16□□□□□ -1.1
CLSTN3-213ENST00000541953 SPANXDQ9BXN6 97 aa8.16□□□□□ -1.1
CLSTN3-213ENST00000541953 TEX49A0A1B0GTD5 131 aa8.14□□□□□ -1.11
CLSTN3-213ENST00000541953 TIMM17BO60830 172 aa8.14□□□□□ -1.11
CLSTN3-213ENST00000541953 COX6B2Q6YFQ2 88 aa8.14□□□□□ -1.11
CLSTN3-213ENST00000541953 CBY1Q9Y3M2 126 aa8.14□□□□□ -1.11
CLSTN3-213ENST00000541953 USH2AO75445 5202 aa8.13□□□□□ -1.11
CLSTN3-213ENST00000541953 SSPOA2VEC9 5147 aa8.13□□□□□ -1.11
CLSTN3-213ENST00000541953 IGLV5-48A0A075B6I7 105 aa8.12□□□□□ -1.11
CLSTN3-213ENST00000541953 ZNF815PA8K554 130 aa8.12□□□□□ -1.11
CLSTN3-213ENST00000541953 SYS1-DBNDD2H3BUS1 97 aa8.12□□□□□ -1.11
CLSTN3-213ENST00000541953 AKR1D1P51857 326 aa8.11□□□□□ -1.11
CLSTN3-213ENST00000541953 COLCA2A8K830 154 aa8.1□□□□□ -1.11
CLSTN3-213ENST00000541953 LINC01545Q5VT33 79 aa8.09□□□□□ -1.11
CLSTN3-213ENST00000541953 TRBV7-6A0A0J9YX20 115 aa8.06□□□□□ -1.12
CLSTN3-213ENST00000541953 LINC00518Q8N0U6 118 aa8.06□□□□□ -1.12
CLSTN3-213ENST00000541953 A0A1B0GWB2 263 aa8.05□□□□□ -1.12
CLSTN3-213ENST00000541953 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.04□□□□□ -1.12
CLSTN3-213ENST00000541953 A6NDN8 102 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BKO60814 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BJP06899 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BOP23527 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BBP33778 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BDP58876 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BCP62807 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST2H2BEQ16778 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 ANKRD39Q53RE8 183 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BHQ93079 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BNQ99877 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 HIST1H2BMQ99879 126 aa8.02□□□□□ -1.13
CLSTN3-213ENST00000541953 KRTAP9-7A8MTY7 169 aa8.01□□□□□ -1.13
CLSTN3-213ENST00000541953 C3orf79P0CE67 100 aa8.01□□□□□ -1.13
CLSTN3-213ENST00000541953 Q6Q795 121 aa8.01□□□□□ -1.13
CLSTN3-213ENST00000541953 PET117Q6UWS5 81 aa8.01□□□□□ -1.13
CLSTN3-213ENST00000541953 SMIM11BQ8TCY0 68 aa8□□□□□ -1.13
CLSTN3-213ENST00000541953 SCGB1D4Q6XE38 83 aa7.99□□□□□ -1.13
CLSTN3-213ENST00000541953 MUSTN1Q8IVN3 82 aa7.99□□□□□ -1.13
CLSTN3-213ENST00000541953 SLC7A5P1Q8MH63 180 aa7.99□□□□□ -1.13
CLSTN3-213ENST00000541953 KRTAP9-8Q9BYQ0 159 aa7.99□□□□□ -1.13
CLSTN3-213ENST00000541953 TCL1BO95988 128 aa7.98□□□□□ -1.13
CLSTN3-213ENST00000541953 OBSCN-AS1Q96MR7 158 aa7.98□□□□□ -1.13
CLSTN3-213ENST00000541953 PCP2Q8IVA1 136 aa7.97□□□□□ -1.13
CLSTN3-213ENST00000541953 ATOH7Q8N100 152 aa7.96□□□□□ -1.14
CLSTN3-213ENST00000541953 IGFL1Q6UW32 110 aa7.95□□□□□ -1.14
CLSTN3-213ENST00000541953 Q75L30 129 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms