RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 MUC7Q8TAX7 377 aa8.92□□□□□ -0.98
PTPN1-202ENST00000541713 SERP2Q8N6R1 65 aa8.92□□□□□ -0.98
PTPN1-202ENST00000541713 ST20-AS1Q8NBB2 130 aa8.9□□□□□ -0.98
PTPN1-202ENST00000541713 M0R378 163 aa8.89□□□□□ -0.99
PTPN1-202ENST00000541713 EGFEM1PQ0D2K5 195 aa8.89□□□□□ -0.99
PTPN1-202ENST00000541713 C7orf33Q8WU49 177 aa8.89□□□□□ -0.99
PTPN1-202ENST00000541713 LINC00167Q96N53 147 aa8.89□□□□□ -0.99
PTPN1-202ENST00000541713 BPY2O14599 106 aa8.88□□□□□ -0.99
PTPN1-202ENST00000541713 UBE2BP63146 152 aa8.88□□□□□ -0.99
PTPN1-202ENST00000541713 DEFB116Q30KQ4 102 aa8.88□□□□□ -0.99
PTPN1-202ENST00000541713 LINC00588Q9Y4M8 146 aa8.88□□□□□ -0.99
PTPN1-202ENST00000541713 A0A096LNI7 61 aa8.87□□□□□ -0.99
PTPN1-202ENST00000541713 KRTAP26-1Q6PEX3 210 aa8.87□□□□□ -0.99
PTPN1-202ENST00000541713 LYSTQ99698 3801 aa8.86□□□□□ -0.99
PTPN1-202ENST00000541713 ELOF1P60002 83 aaKnown RBP8.86□□□□□ -0.99
PTPN1-202ENST00000541713 FUSP35637 526 aaKnown RBP eCLIP8.86□□□□□ -0.99
PTPN1-202ENST00000541713 DPH3Q96FX2 82 aa8.85□□□□□ -0.99
PTPN1-202ENST00000541713 RMI2Q96E14 147 aa8.85□□□□□ -0.99
PTPN1-202ENST00000541713 ETDCA0A1B0GVM5 59 aa8.85□□□□□ -0.99
PTPN1-202ENST00000541713 NREPQ16612 68 aa8.84□□□□□ -0.99
PTPN1-202ENST00000541713 PSCAO43653 123 aa8.84□□□□□ -1
PTPN1-202ENST00000541713 TM2D3Q9BRN9 247 aa8.84□□□□□ -1
PTPN1-202ENST00000541713 GVQW2A0A096LPI5 108 aaPredicted RBP8.82□□□□□ -1
PTPN1-202ENST00000541713 ERC2-IT1O76042 136 aa8.82□□□□□ -1
PTPN1-202ENST00000541713 LINC01556Q5JQF7 62 aa8.82□□□□□ -1
PTPN1-202ENST00000541713 LINC00528Q8N1L1 170 aa8.82□□□□□ -1
PTPN1-202ENST00000541713 HIGD2AQ9BW72 106 aa8.82□□□□□ -1
PTPN1-202ENST00000541713 CRYGAP11844 174 aa8.81□□□□□ -1
PTPN1-202ENST00000541713 PRLHP81277 87 aa8.81□□□□□ -1
PTPN1-202ENST00000541713 UBE2DNLQ8IWF7 75 aa8.79□□□□□ -1
PTPN1-202ENST00000541713 CHTF8P0CG12 524 aa8.79□□□□□ -1
PTPN1-202ENST00000541713 Q8N377 158 aa8.78□□□□□ -1
PTPN1-202ENST00000541713 DNAH10Q8IVF4 4471 aa8.77□□□□□ -1.01
PTPN1-202ENST00000541713 LOC110117498A0A087WWA1 95 aa8.77□□□□□ -1.01
PTPN1-202ENST00000541713 J3KT08 172 aa8.77□□□□□ -1.01
PTPN1-202ENST00000541713 K7EIL1 84 aa8.76□□□□□ -1.01
PTPN1-202ENST00000541713 Q9BRP9 147 aa8.76□□□□□ -1.01
PTPN1-202ENST00000541713 TRBV7-4A0A0J9YYF1 115 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 OXTP01178 125 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 TGP01266 2768 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 F8WEM9 126 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 ATP5EP2Q5VTU8 51 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 FAM30AQ9NZY2 134 aa8.75□□□□□ -1.01
PTPN1-202ENST00000541713 KRTAP1-5Q9BYS1 174 aa8.73□□□□□ -1.01
PTPN1-202ENST00000541713 C1orf137Q5JT78 98 aa8.73□□□□□ -1.01
PTPN1-202ENST00000541713 PRR4Q16378 134 aa8.73□□□□□ -1.01
PTPN1-202ENST00000541713 C4orf26Q17RF5 130 aa8.72□□□□□ -1.01
PTPN1-202ENST00000541713 KRTAP7-1Q8IUC3 87 aa8.72□□□□□ -1.01
PTPN1-202ENST00000541713 WIPF1O43516 503 aa8.72□□□□□ -1.01
PTPN1-202ENST00000541713 DNAH10OSP0CZ25 163 aa8.72□□□□□ -1.01
PTPN1-202ENST00000541713 MRPL55Q7Z7F7 128 aaKnown RBP8.72□□□□□ -1.01
PTPN1-202ENST00000541713 H3BNG1 76 aa8.71□□□□□ -1.01
PTPN1-202ENST00000541713 LRCOL1A6NCL2 159 aa8.7□□□□□ -1.02
PTPN1-202ENST00000541713 HRCT1Q6UXD1 115 aa8.7□□□□□ -1.02
PTPN1-202ENST00000541713 PDE6GP18545 87 aa8.7□□□□□ -1.02
PTPN1-202ENST00000541713 Q6ZRX8 168 aa8.7□□□□□ -1.02
PTPN1-202ENST00000541713 KCNQ1DNQ9H478 68 aa8.69□□□□□ -1.02
PTPN1-202ENST00000541713 TMEM258P61165 79 aa8.69□□□□□ -1.02
PTPN1-202ENST00000541713 TRAV7A0A075B6U4 112 aa8.68□□□□□ -1.02
PTPN1-202ENST00000541713 A0A1W2PNM2 257 aa8.68□□□□□ -1.02
PTPN1-202ENST00000541713 FAM236DA0A1B0GTK5 79 aa8.68□□□□□ -1.02
PTPN1-202ENST00000541713 FAM236CP0DP71 79 aa8.68□□□□□ -1.02
PTPN1-202ENST00000541713 IGLV1-50A0A075B6I6 118 aa8.68□□□□□ -1.02
PTPN1-202ENST00000541713 PHF5AQ7RTV0 110 aaKnown RBP8.67□□□□□ -1.02
PTPN1-202ENST00000541713 SMIM29Q86T20 159 aa8.67□□□□□ -1.02
PTPN1-202ENST00000541713 WFDC13Q8IUB5 93 aa8.67□□□□□ -1.02
PTPN1-202ENST00000541713 RPL37AP61513 92 aaKnown RBP8.66□□□□□ -1.02
PTPN1-202ENST00000541713 REG3GQ6UW15 175 aa8.65□□□□□ -1.03
PTPN1-202ENST00000541713 CMYA5Q8N3K9 4069 aa8.65□□□□□ -1.03
PTPN1-202ENST00000541713 IGKV4-1P06312 121 aa8.64□□□□□ -1.03
PTPN1-202ENST00000541713 CXCL6P80162 114 aa8.64□□□□□ -1.03
PTPN1-202ENST00000541713 H7BZZ5 65 aa8.64□□□□□ -1.03
PTPN1-202ENST00000541713 A0A087WSZ3 146 aa8.63□□□□□ -1.03
PTPN1-202ENST00000541713 MPLKIPQ8TAP9 179 aa8.63□□□□□ -1.03
PTPN1-202ENST00000541713 DHRS4-AS1Q9P1J3 65 aa8.63□□□□□ -1.03
PTPN1-202ENST00000541713 TRBV7-6A0A0J9YX20 115 aa8.62□□□□□ -1.03
PTPN1-202ENST00000541713 K7EQZ3 153 aa8.62□□□□□ -1.03
PTPN1-202ENST00000541713 TMEM254Q8TBM7 123 aa8.62□□□□□ -1.03
PTPN1-202ENST00000541713 HUWE1Q7Z6Z7 4374 aaKnown RBP8.62□□□□□ -1.03
PTPN1-202ENST00000541713 KRTAP11-1Q8IUC1 163 aa8.61□□□□□ -1.03
PTPN1-202ENST00000541713 LINC00476Q8WZB0 136 aa8.61□□□□□ -1.03
PTPN1-202ENST00000541713 LINC00474Q9P2X8 69 aa8.61□□□□□ -1.03
PTPN1-202ENST00000541713 UBE2AP49459 152 aa8.59□□□□□ -1.04
PTPN1-202ENST00000541713 MDFIQ99750 246 aa8.59□□□□□ -1.04
PTPN1-202ENST00000541713 PRYO14603 147 aa8.57□□□□□ -1.04
PTPN1-202ENST00000541713 H3BQ85 93 aa8.57□□□□□ -1.04
PTPN1-202ENST00000541713 PANO1I0J062 215 aa8.56□□□□□ -1.04
PTPN1-202ENST00000541713 Q8NBF4 154 aa8.56□□□□□ -1.04
PTPN1-202ENST00000541713 IGLV9-49A0A0B4J1Y8 123 aa8.55□□□□□ -1.04
PTPN1-202ENST00000541713 KRTAP4-16G5E9R7 235 aaPredicted RBP8.55□□□□□ -1.04
PTPN1-202ENST00000541713 IGFL1Q6UW32 110 aa8.55□□□□□ -1.04
PTPN1-202ENST00000541713 ANAPC11Q9NYG5 84 aa8.55□□□□□ -1.04
PTPN1-202ENST00000541713 DNAH7Q8WXX0 4024 aa8.55□□□□□ -1.04
PTPN1-202ENST00000541713 IGLV5-48A0A075B6I7 105 aa8.53□□□□□ -1.04
PTPN1-202ENST00000541713 EPM2AB3EWF7 344 aa8.53□□□□□ -1.04
PTPN1-202ENST00000541713 C5orf47Q569G3 176 aa8.53□□□□□ -1.04
PTPN1-202ENST00000541713 DNAH9Q9NYC9 4486 aa8.53□□□□□ -1.04
PTPN1-202ENST00000541713 TLX1NBP0CAT3 122 aa8.52□□□□□ -1.05
PTPN1-202ENST00000541713 DSCR10P59022 87 aa8.52□□□□□ -1.05
PTPN1-202ENST00000541713 KLKP1Q107X0 134 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 178.2 ms