RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 COX7BP24311 80 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 ST20-AS1Q8NBB2 130 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 B9D2Q9BPU9 175 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 NF1P21359 2839 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 H3BUX3 64 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 LINC00313P59037 77 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 Q8NDZ9 215 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 PLA2G2DQ9UNK4 145 aa6.35□□□□□ -1.39
CLIP1-214ENST00000540539 NIPBLQ6KC79 2804 aaeCLIP6.35□□□□□ -1.39
CLIP1-214ENST00000540539 LOC101927531A0A1B0GV80 90 aa6.34□□□□□ -1.39
CLIP1-214ENST00000540539 IGHV4-59P01825 116 aa6.34□□□□□ -1.39
CLIP1-214ENST00000540539 VPREB1P12018 145 aa6.34□□□□□ -1.39
CLIP1-214ENST00000540539 LY6EQ16553 131 aa6.34□□□□□ -1.39
CLIP1-214ENST00000540539 C9orf116Q5BN46 136 aaPredicted RBP6.34□□□□□ -1.39
CLIP1-214ENST00000540539 Q6YL49 198 aa6.34□□□□□ -1.39
CLIP1-214ENST00000540539 INAFM1C9JVW0 142 aa6.33□□□□□ -1.4
CLIP1-214ENST00000540539 LINC00208Q96KT6 92 aa6.33□□□□□ -1.4
CLIP1-214ENST00000540539 KLK12Q9UKR0 248 aa6.33□□□□□ -1.4
CLIP1-214ENST00000540539 ETDCA0A1B0GVM5 59 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 A6NDX4 124 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 H3BQ85 93 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 ELOF1P60002 83 aaKnown RBP6.32□□□□□ -1.4
CLIP1-214ENST00000540539 DEFB114Q30KQ6 69 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 SERTAD4-AS1Q5TG53 156 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 C5orf56Q8N8D9 126 aa6.32□□□□□ -1.4
CLIP1-214ENST00000540539 NDUFB1O75438 58 aa6.31□□□□□ -1.4
CLIP1-214ENST00000540539 JMJD1CQ15652 2540 aa6.31□□□□□ -1.4
CLIP1-214ENST00000540539 WNK1Q9H4A3 2382 aa6.31□□□□□ -1.4
CLIP1-214ENST00000540539 LOC100131303A0A0U1RQF7 123 aa6.3□□□□□ -1.4
CLIP1-214ENST00000540539 CUBNO60494 3623 aa6.3□□□□□ -1.4
CLIP1-214ENST00000540539 C3orf84H3BNL1 204 aa6.3□□□□□ -1.4
CLIP1-214ENST00000540539 Q9BRP9 147 aa6.3□□□□□ -1.4
CLIP1-214ENST00000540539 SETD2Q9BYW2 2564 aaPredicted RBP6.3□□□□□ -1.4
CLIP1-214ENST00000540539 DNAJC9-AS1A6NH13 148 aa6.29□□□□□ -1.4
CLIP1-214ENST00000540539 ADM2Q7Z4H4 148 aa6.28□□□□□ -1.4
CLIP1-214ENST00000540539 IGHV4-30-4P0DP06 118 aa6.28□□□□□ -1.4
CLIP1-214ENST00000540539 HIGD2BQ4VC39 106 aa6.27□□□□□ -1.41
CLIP1-214ENST00000540539 USMG5Q96IX5 58 aa6.27□□□□□ -1.41
CLIP1-214ENST00000540539 Q8IZM0 81 aa6.26□□□□□ -1.41
CLIP1-214ENST00000540539 TRGV4A0A0C4DH28 118 aa6.26□□□□□ -1.41
CLIP1-214ENST00000540539 C18orf65Q6ZTR6 163 aa6.25□□□□□ -1.41
CLIP1-214ENST00000540539 IGLV6-57P01721 117 aa6.25□□□□□ -1.41
CLIP1-214ENST00000540539 ZNF702PQ9H963 129 aa6.24□□□□□ -1.41
CLIP1-214ENST00000540539 SPANXA2-OT1Q8N9U9 137 aa6.24□□□□□ -1.41
CLIP1-214ENST00000540539 ATRQ13535 2644 aa6.24□□□□□ -1.41
CLIP1-214ENST00000540539 LINC00959A0A1B0GUT2 108 aa6.23□□□□□ -1.41
CLIP1-214ENST00000540539 SPINK7P58062 85 aa6.23□□□□□ -1.41
CLIP1-214ENST00000540539 COX17Q14061 63 aa6.23□□□□□ -1.41
CLIP1-214ENST00000540539 MP68P56378 58 aa6.23□□□□□ -1.41
CLIP1-214ENST00000540539 CASC2Q6XLA1 102 aa6.22□□□□□ -1.41
CLIP1-214ENST00000540539 WFDC10AQ9H1F0 79 aa6.22□□□□□ -1.41
CLIP1-214ENST00000540539 KCNQ1DNQ9H478 68 aa6.22□□□□□ -1.41
CLIP1-214ENST00000540539 TRGV1A0A0A0MS02 117 aa6.22□□□□□ -1.41
CLIP1-214ENST00000540539 IGHV4-28A0A0C4DH34 117 aa6.21□□□□□ -1.42
CLIP1-214ENST00000540539 H3BUA1 57 aa6.21□□□□□ -1.42
CLIP1-214ENST00000540539 COA5Q86WW8 74 aa6.21□□□□□ -1.42
CLIP1-214ENST00000540539 KIAA0087Q14695 138 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 ODF3L2Q3SX64 289 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 PLAC8Q9NZF1 115 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 K7EQZ3 153 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 GYPEP15421 78 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 DSCR10P59022 87 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 C10orf99Q6UWK7 81 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 Q8NAQ8 132 aa6.2□□□□□ -1.42
CLIP1-214ENST00000540539 IGLV1-40P01703 118 aa6.19□□□□□ -1.42
CLIP1-214ENST00000540539 PLA2G1BP04054 148 aaKnown RBP6.19□□□□□ -1.42
CLIP1-214ENST00000540539 DEFB131AP59861 70 aa6.19□□□□□ -1.42
CLIP1-214ENST00000540539 LINC01558Q9Y6Z2 57 aa6.19□□□□□ -1.42
CLIP1-214ENST00000540539 SPAG11BQ08648 103 aa6.17□□□□□ -1.42
CLIP1-214ENST00000540539 TENM1Q9UKZ4 2725 aa6.17□□□□□ -1.42
CLIP1-214ENST00000540539 SPAG11AQ6PDA7 123 aa6.17□□□□□ -1.42
CLIP1-214ENST00000540539 CLPSL2Q6UWE3 100 aa6.16□□□□□ -1.42
CLIP1-214ENST00000540539 NOTCH3Q9UM47 2321 aa6.16□□□□□ -1.42
CLIP1-214ENST00000540539 FBN1P35555 2871 aaKnown RBP6.16□□□□□ -1.42
CLIP1-214ENST00000540539 INSP01308 110 aa6.15□□□□□ -1.42
CLIP1-214ENST00000540539 COL6A5A8TX70 2615 aa6.15□□□□□ -1.42
CLIP1-214ENST00000540539 DEFB116Q30KQ4 102 aa6.15□□□□□ -1.42
CLIP1-214ENST00000540539 LINC00476Q8WZB0 136 aa6.15□□□□□ -1.42
CLIP1-214ENST00000540539 RETNLBQ9BQ08 111 aa6.14□□□□□ -1.43
CLIP1-214ENST00000540539 KRTAP24-1Q3LI83 254 aa6.14□□□□□ -1.43
CLIP1-214ENST00000540539 KPRPQ5T749 579 aaPredicted RBP6.14□□□□□ -1.43
CLIP1-214ENST00000540539 ZNF706Q9Y5V0 76 aaPredicted RBP6.14□□□□□ -1.43
CLIP1-214ENST00000540539 A0A1W2PNM2 257 aa6.13□□□□□ -1.43
CLIP1-214ENST00000540539 CNBPP62633 177 aaKnown RBP6.13□□□□□ -1.43
CLIP1-214ENST00000540539 C9orf163Q8N9P6 203 aa6.13□□□□□ -1.43
CLIP1-214ENST00000540539 STAB1Q9NY15 2570 aa6.13□□□□□ -1.43
CLIP1-214ENST00000540539 H0Y9J4 135 aa6.12□□□□□ -1.43
CLIP1-214ENST00000540539 KRTAP10-3P60369 221 aa6.12□□□□□ -1.43
CLIP1-214ENST00000540539 IGLV5-48A0A075B6I7 105 aa6.12□□□□□ -1.43
CLIP1-214ENST00000540539 H0Y9P7 68 aa6.12□□□□□ -1.43
CLIP1-214ENST00000540539 WFDC13Q8IUB5 93 aa6.12□□□□□ -1.43
CLIP1-214ENST00000540539 UNQ6190/PRO20217Q6UXQ8 127 aa6.11□□□□□ -1.43
CLIP1-214ENST00000540539 C4orf3Q8WVX3 66 aa6.11□□□□□ -1.43
CLIP1-214ENST00000540539 IGKV2D-24A0A075B6R9 120 aa6.11□□□□□ -1.43
CLIP1-214ENST00000540539 DEFB136Q30KP8 78 aa6.11□□□□□ -1.43
CLIP1-214ENST00000540539 A0A1B0GW54 56 aa6.1□□□□□ -1.43
CLIP1-214ENST00000540539 RTL8CO15255 209 aa6.1□□□□□ -1.43
CLIP1-214ENST00000540539 ASB16-AS1Q495Z4 193 aa6.1□□□□□ -1.43
CLIP1-214ENST00000540539 VWFP04275 2813 aa6.09□□□□□ -1.43
CLIP1-214ENST00000540539 H3BPC8 53 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms