RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 GHRHP01286 108 aa10.24□□□□□ -0.77
USH1C-204ENST00000526313 PRKDCP78527 4128 aaKnown RBP10.23□□□□□ -0.77
USH1C-204ENST00000526313 IGLV1-50A0A075B6I6 118 aa10.23□□□□□ -0.77
USH1C-204ENST00000526313 LINC00846Q9NV44 126 aa10.23□□□□□ -0.77
USH1C-204ENST00000526313 KRTAP4-16G5E9R7 235 aaPredicted RBP10.22□□□□□ -0.77
USH1C-204ENST00000526313 RBM3P98179 157 aaKnown RBP10.22□□□□□ -0.77
USH1C-204ENST00000526313 LOC110117498A0A087WWA1 95 aa10.22□□□□□ -0.77
USH1C-204ENST00000526313 SPRR1AP35321 89 aa10.22□□□□□ -0.77
USH1C-204ENST00000526313 PRYO14603 147 aa10.21□□□□□ -0.78
USH1C-204ENST00000526313 PSCAO43653 123 aa10.21□□□□□ -0.78
USH1C-204ENST00000526313 NBDYA0A0U1RRE5 68 aa10.2□□□□□ -0.78
USH1C-204ENST00000526313 Q6ZQT0 140 aa10.2□□□□□ -0.78
USH1C-204ENST00000526313 LAMTOR3Q9UHA4 124 aa10.2□□□□□ -0.78
USH1C-204ENST00000526313 C14orf177Q52M58 125 aa10.19□□□□□ -0.78
USH1C-204ENST00000526313 B5MCH6 92 aa10.19□□□□□ -0.78
USH1C-204ENST00000526313 TENM2Q9NT68 2774 aa10.18□□□□□ -0.78
USH1C-204ENST00000526313 C16orf90A8MZG2 172 aa10.18□□□□□ -0.78
USH1C-204ENST00000526313 VPS13DQ5THJ4 4388 aa10.18□□□□□ -0.78
USH1C-204ENST00000526313 MRPL55Q7Z7F7 128 aaKnown RBP10.18□□□□□ -0.78
USH1C-204ENST00000526313 LRCOL1A6NCL2 159 aa10.17□□□□□ -0.78
USH1C-204ENST00000526313 RPL37AP8A6NKH3 93 aa10.17□□□□□ -0.78
USH1C-204ENST00000526313 CCDC179H3BU77 68 aa10.17□□□□□ -0.78
USH1C-204ENST00000526313 Q6ZRN7 208 aaPredicted RBP10.17□□□□□ -0.78
USH1C-204ENST00000526313 PDE6GP18545 87 aa10.16□□□□□ -0.78
USH1C-204ENST00000526313 STARD9Q9P2P6 4700 aa10.16□□□□□ -0.78
USH1C-204ENST00000526313 DNHD1Q96M86 4753 aa10.16□□□□□ -0.78
USH1C-204ENST00000526313 Q6JHZ5 121 aa10.16□□□□□ -0.78
USH1C-204ENST00000526313 Q6ZRX8 168 aa10.16□□□□□ -0.78
USH1C-204ENST00000526313 FAM19A5Q7Z5A7 132 aaPredicted RBP10.16□□□□□ -0.78
USH1C-204ENST00000526313 A0A096LNI7 61 aa10.15□□□□□ -0.78
USH1C-204ENST00000526313 SS18L2Q9UHA2 77 aa10.15□□□□□ -0.78
USH1C-204ENST00000526313 MEGF8Q7Z7M0 2845 aa10.15□□□□□ -0.79
USH1C-204ENST00000526313 TRBV7-4A0A0J9YYF1 115 aa10.15□□□□□ -0.79
USH1C-204ENST00000526313 DSCR8Q96T75 97 aa10.15□□□□□ -0.79
USH1C-204ENST00000526313 DHRS4-AS1Q9P1J3 65 aa10.15□□□□□ -0.79
USH1C-204ENST00000526313 Q9BRP9 147 aa10.13□□□□□ -0.79
USH1C-204ENST00000526313 FAM236AA0A1B0GUQ0 79 aa10.12□□□□□ -0.79
USH1C-204ENST00000526313 FAM236BA0A1B0GV22 79 aa10.12□□□□□ -0.79
USH1C-204ENST00000526313 LINC01547P58512 204 aaPredicted RBP10.12□□□□□ -0.79
USH1C-204ENST00000526313 A0A1W2PNN7 141 aa10.11□□□□□ -0.79
USH1C-204ENST00000526313 ETDCA0A1B0GVM5 59 aa10.1□□□□□ -0.79
USH1C-204ENST00000526313 Q8N377 158 aa10.1□□□□□ -0.79
USH1C-204ENST00000526313 C9orf163Q8N9P6 203 aa10.1□□□□□ -0.79
USH1C-204ENST00000526313 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.1□□□□□ -0.79
USH1C-204ENST00000526313 M0R2N4 97 aa10.1□□□□□ -0.79
USH1C-204ENST00000526313 REG3GQ6UW15 175 aa10.09□□□□□ -0.79
USH1C-204ENST00000526313 IGKV2-24A0A0C4DH68 120 aa10.08□□□□□ -0.8
USH1C-204ENST00000526313 IGLV5-48A0A075B6I7 105 aa10.07□□□□□ -0.8
USH1C-204ENST00000526313 IGKV3D-7A0A0C4DH55 119 aa10.07□□□□□ -0.8
USH1C-204ENST00000526313 ATP5EP2Q5VTU8 51 aa10.06□□□□□ -0.8
USH1C-204ENST00000526313 UBL5Q9BZL1 73 aa10.06□□□□□ -0.8
USH1C-204ENST00000526313 PKIGQ9Y2B9 76 aa10.06□□□□□ -0.8
USH1C-204ENST00000526313 HIST1H4AP62805 103 aaKnown RBP10.05□□□□□ -0.8
USH1C-204ENST00000526313 ERC2-IT1O76042 136 aa10.04□□□□□ -0.8
USH1C-204ENST00000526313 Q6ZR54 194 aa10.03□□□□□ -0.8
USH1C-204ENST00000526313 CHTF8P0CG12 524 aa10.03□□□□□ -0.8
USH1C-204ENST00000526313 KRTAP21-3Q3LHN1 58 aa10.03□□□□□ -0.8
USH1C-204ENST00000526313 DEFB105AQ8NG35 78 aa10.03□□□□□ -0.8
USH1C-204ENST00000526313 TNP2Q05952 138 aa10.01□□□□□ -0.81
USH1C-204ENST00000526313 ST20-AS1Q8NBB2 130 aa10.01□□□□□ -0.81
USH1C-204ENST00000526313 Q6ZVQ6 151 aa10.01□□□□□ -0.81
USH1C-204ENST00000526313 LINC00474Q9P2X8 69 aa10.01□□□□□ -0.81
USH1C-204ENST00000526313 UBE2BP63146 152 aa10□□□□□ -0.81
USH1C-204ENST00000526313 A0A087WTM6 91 aa9.99□□□□□ -0.81
USH1C-204ENST00000526313 EPM2AB3EWF7 344 aa9.99□□□□□ -0.81
USH1C-204ENST00000526313 PHF5AQ7RTV0 110 aaKnown RBP9.98□□□□□ -0.81
USH1C-204ENST00000526313 KRTAP11-1Q8IUC1 163 aa9.98□□□□□ -0.81
USH1C-204ENST00000526313 C3orf22Q8N5N4 141 aa9.98□□□□□ -0.81
USH1C-204ENST00000526313 KMT2AQ03164 3969 aa9.97□□□□□ -0.81
USH1C-204ENST00000526313 UQCRQO14949 82 aa9.97□□□□□ -0.81
USH1C-204ENST00000526313 C9orf153Q5TBE3 101 aa9.97□□□□□ -0.81
USH1C-204ENST00000526313 H0Y9J4 135 aa9.96□□□□□ -0.82
USH1C-204ENST00000526313 FAM19A1Q7Z5A9 133 aa9.96□□□□□ -0.82
USH1C-204ENST00000526313 A0A087WVE0 104 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 PANO1I0J062 215 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 ATOX1O00244 68 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 SMIM29Q86T20 159 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 HECTD4Q9Y4D8 3996 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 CXCL6P80162 114 aa9.95□□□□□ -0.82
USH1C-204ENST00000526313 DNAH2Q9P225 4427 aa9.94□□□□□ -0.82
USH1C-204ENST00000526313 A0A1B0GW54 56 aa9.94□□□□□ -0.82
USH1C-204ENST00000526313 PRLHP81277 87 aa9.94□□□□□ -0.82
USH1C-204ENST00000526313 FBN3Q75N90 2809 aa9.93□□□□□ -0.82
USH1C-204ENST00000526313 SPACA4Q8TDM5 124 aa9.93□□□□□ -0.82
USH1C-204ENST00000526313 DNAH6Q9C0G6 4158 aa9.93□□□□□ -0.82
USH1C-204ENST00000526313 COX7CP15954 63 aa9.92□□□□□ -0.82
USH1C-204ENST00000526313 DNAH17Q9UFH2 4485 aa9.92□□□□□ -0.82
USH1C-204ENST00000526313 HAMPP81172 84 aa9.91□□□□□ -0.82
USH1C-204ENST00000526313 A0A1W2PNM2 257 aa9.91□□□□□ -0.82
USH1C-204ENST00000526313 C1orf137Q5JT78 98 aa9.91□□□□□ -0.82
USH1C-204ENST00000526313 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.91□□□□□ -0.82
USH1C-204ENST00000526313 SMIM20Q8N5G0 67 aa9.9□□□□□ -0.82
USH1C-204ENST00000526313 Q8NBF4 154 aa9.88□□□□□ -0.83
USH1C-204ENST00000526313 HIGD2AQ9BW72 106 aa9.88□□□□□ -0.83
USH1C-204ENST00000526313 IGLV8-61A0A075B6I0 122 aa9.88□□□□□ -0.83
USH1C-204ENST00000526313 SVIPQ8NHG7 77 aa9.88□□□□□ -0.83
USH1C-204ENST00000526313 SPRR4Q96PI1 79 aa9.88□□□□□ -0.83
USH1C-204ENST00000526313 RTL8CO15255 209 aa9.87□□□□□ -0.83
USH1C-204ENST00000526313 SPRR1BP22528 89 aa9.87□□□□□ -0.83
USH1C-204ENST00000526313 FUSP35637 526 aaKnown RBP eCLIP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms