RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 DDTP30046 118 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 AKR1D1P51857 326 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 KRTDAPP60985 99 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 LINC01545Q5VT33 79 aa6.5□□□□□ -1.37
HMGCS1-204ENST00000507293 LOC107984156A0A0G2JMH3 177 aa6.49□□□□□ -1.37
HMGCS1-204ENST00000507293 ARL17AQ8IVW1 177 aa6.49□□□□□ -1.37
HMGCS1-204ENST00000507293 TRBV10-2A0A0K0K1G8 114 aa6.48□□□□□ -1.37
HMGCS1-204ENST00000507293 ASB16-AS1Q495Z4 193 aa6.48□□□□□ -1.37
HMGCS1-204ENST00000507293 Q6ZRX8 168 aa6.48□□□□□ -1.37
HMGCS1-204ENST00000507293 Q9BRP9 147 aa6.48□□□□□ -1.37
HMGCS1-204ENST00000507293 J3QQQ9 107 aa6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 LGALS3P17931 250 aaKnown RBP6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 NMUP48645 174 aa6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 LCE2DQ5TA82 110 aaPredicted RBP6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 HIST3H2BBQ8N257 126 aa6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 MIEN1Q9BRT3 115 aa6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 SPANXB1Q9NS25 103 aaPredicted RBP6.47□□□□□ -1.37
HMGCS1-204ENST00000507293 E9PLD3 99 aa6.46□□□□□ -1.38
HMGCS1-204ENST00000507293 RPS29P62273 56 aaKnown RBP6.46□□□□□ -1.38
HMGCS1-204ENST00000507293 SSBP3-AS1Q7Z2R9 100 aa6.46□□□□□ -1.38
HMGCS1-204ENST00000507293 Q8N377 158 aa6.46□□□□□ -1.38
HMGCS1-204ENST00000507293 S100A7L2Q5SY68 101 aa6.45□□□□□ -1.38
HMGCS1-204ENST00000507293 HIST1H2BLQ99880 126 aa6.45□□□□□ -1.38
HMGCS1-204ENST00000507293 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
HMGCS1-204ENST00000507293 TRAV23DV6A0A075B6W5 121 aa6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 SLC25A20O43772 301 aa6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 NDUFC2O95298 119 aa6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 IGLV6-57P01721 117 aa6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 SEC61BP60468 96 aaKnown RBP6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 SNRPEP62304 92 aaKnown RBP6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 C9orf153Q5TBE3 101 aa6.44□□□□□ -1.38
HMGCS1-204ENST00000507293 KRTAP9-6A0A140TA67 174 aa6.43□□□□□ -1.38
HMGCS1-204ENST00000507293 NPC2P61916 151 aa6.43□□□□□ -1.38
HMGCS1-204ENST00000507293 SOSTDC1Q6X4U4 206 aa6.43□□□□□ -1.38
HMGCS1-204ENST00000507293 C5orf52A6NGY3 159 aa6.42□□□□□ -1.38
HMGCS1-204ENST00000507293 EIF4EBP3O60516 100 aaPredicted RBP6.42□□□□□ -1.38
HMGCS1-204ENST00000507293 JOSD1Q15040 202 aaPredicted RBP6.42□□□□□ -1.38
HMGCS1-204ENST00000507293 A0A0J9YXY3 114 aa6.41□□□□□ -1.38
HMGCS1-204ENST00000507293 ZNF73O43830 326 aaPredicted RBP6.41□□□□□ -1.38
HMGCS1-204ENST00000507293 LINC01547P58512 204 aaPredicted RBP6.41□□□□□ -1.38
HMGCS1-204ENST00000507293 ST20-AS1Q8NBB2 130 aa6.41□□□□□ -1.38
HMGCS1-204ENST00000507293 ADAMTSL4-AS1Q5T5F5 129 aa6.4□□□□□ -1.38
HMGCS1-204ENST00000507293 HSBP1L1C9JCN9 74 aa6.39□□□□□ -1.39
HMGCS1-204ENST00000507293 XP32Q5T750 250 aa6.39□□□□□ -1.39
HMGCS1-204ENST00000507293 ATOH7Q8N100 152 aa6.39□□□□□ -1.39
HMGCS1-204ENST00000507293 ZNF815PA8K554 130 aa6.38□□□□□ -1.39
HMGCS1-204ENST00000507293 TIMM17BO60830 172 aa6.37□□□□□ -1.39
HMGCS1-204ENST00000507293 SCGB1D1O95968 90 aa6.37□□□□□ -1.39
HMGCS1-204ENST00000507293 HINT1P49773 126 aaPredicted RBP6.37□□□□□ -1.39
HMGCS1-204ENST00000507293 ANKRD39Q53RE8 183 aa6.36□□□□□ -1.39
HMGCS1-204ENST00000507293 OR13C6PQ8NH95 151 aa6.36□□□□□ -1.39
HMGCS1-204ENST00000507293 CBY1Q9Y3M2 126 aa6.36□□□□□ -1.39
HMGCS1-204ENST00000507293 SPRR1BP22528 89 aa6.35□□□□□ -1.39
HMGCS1-204ENST00000507293 SCGB1D4Q6XE38 83 aa6.35□□□□□ -1.39
HMGCS1-204ENST00000507293 LINC00308Q8TCZ7 52 aa6.35□□□□□ -1.39
HMGCS1-204ENST00000507293 LITAFQ99732 161 aa6.35□□□□□ -1.39
HMGCS1-204ENST00000507293 SPANXCQ9NY87 97 aa6.35□□□□□ -1.39
HMGCS1-204ENST00000507293 HRCT1Q6UXD1 115 aa6.34□□□□□ -1.39
HMGCS1-204ENST00000507293 LIMD2Q9BT23 127 aa6.34□□□□□ -1.39
HMGCS1-204ENST00000507293 TTTY13Q9BZ97 58 aa6.34□□□□□ -1.39
HMGCS1-204ENST00000507293 SLC25A34Q6PIV7 304 aa6.33□□□□□ -1.4
HMGCS1-204ENST00000507293 COPS9Q8WXC6 57 aa6.33□□□□□ -1.4
HMGCS1-204ENST00000507293 DHRS4-AS1Q9P1J3 65 aa6.33□□□□□ -1.4
HMGCS1-204ENST00000507293 SPANXDQ9BXN6 97 aa6.32□□□□□ -1.4
HMGCS1-204ENST00000507293 LAMTOR3Q9UHA4 124 aa6.32□□□□□ -1.4
HMGCS1-204ENST00000507293 Q6ZVH6 145 aa6.31□□□□□ -1.4
HMGCS1-204ENST00000507293 PCP2Q8IVA1 136 aa6.31□□□□□ -1.4
HMGCS1-204ENST00000507293 TMA7Q9Y2S6 64 aaKnown RBP6.31□□□□□ -1.4
HMGCS1-204ENST00000507293 C9orf92A6NGG3 77 aa6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 IFITM1P13164 125 aa6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 COX7BP24311 80 aa6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 ELOF1P60002 83 aaKnown RBP6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 C6orf99Q4VX62 202 aa6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 LCE2CQ5TA81 110 aa6.3□□□□□ -1.4
HMGCS1-204ENST00000507293 Q1RN00 199 aa6.29□□□□□ -1.4
HMGCS1-204ENST00000507293 PCOTHQ58A44 107 aa6.29□□□□□ -1.4
HMGCS1-204ENST00000507293 TAL2Q16559 108 aa6.28□□□□□ -1.4
HMGCS1-204ENST00000507293 KRTAP19-2Q3LHN2 52 aa6.28□□□□□ -1.4
HMGCS1-204ENST00000507293 LINC00518Q8N0U6 118 aa6.28□□□□□ -1.4
HMGCS1-204ENST00000507293 DEFB105AQ8NG35 78 aa6.28□□□□□ -1.4
HMGCS1-204ENST00000507293 IGLV8-61A0A075B6I0 122 aa6.27□□□□□ -1.41
HMGCS1-204ENST00000507293 H7C2G1 150 aa6.26□□□□□ -1.41
HMGCS1-204ENST00000507293 COX8AP10176 69 aa6.26□□□□□ -1.41
HMGCS1-204ENST00000507293 CD164Q04900 197 aa6.26□□□□□ -1.41
HMGCS1-204ENST00000507293 VAMP8Q9BV40 100 aa6.26□□□□□ -1.41
HMGCS1-204ENST00000507293 PRO1933Q9H354 126 aa6.26□□□□□ -1.41
HMGCS1-204ENST00000507293 TEX49A0A1B0GTD5 131 aa6.25□□□□□ -1.41
HMGCS1-204ENST00000507293 SPATA45Q537H7 98 aa6.25□□□□□ -1.41
HMGCS1-204ENST00000507293 MUSTN1Q8IVN3 82 aa6.25□□□□□ -1.41
HMGCS1-204ENST00000507293 PAM16Q9Y3D7 125 aa6.25□□□□□ -1.41
HMGCS1-204ENST00000507293 DLEU1O43261 78 aa6.24□□□□□ -1.41
HMGCS1-204ENST00000507293 MT1HP80294 61 aa6.24□□□□□ -1.41
HMGCS1-204ENST00000507293 SMIM29Q86T20 159 aa6.24□□□□□ -1.41
HMGCS1-204ENST00000507293 TRBV7-6A0A0J9YX20 115 aa6.23□□□□□ -1.41
HMGCS1-204ENST00000507293 A0A1B0GWB2 263 aa6.23□□□□□ -1.41
HMGCS1-204ENST00000507293 A0A0G2JQZ4 141 aa6.22□□□□□ -1.41
HMGCS1-204ENST00000507293 PYY3Q5JQD4 70 aa6.22□□□□□ -1.41
HMGCS1-204ENST00000507293 Q5XG85 94 aa6.22□□□□□ -1.41
HMGCS1-204ENST00000507293 C14orf144Q96I85 54 aa6.22□□□□□ -1.41
HMGCS1-204ENST00000507293 IGLV5-48A0A075B6I7 105 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms